Wall clock time and date at job start Tue Mar 31 2020 22:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46550 * 2 1 4 4 H 1.09000 * 109.47516 * 305.00157 * 3 2 1 5 5 C 1.52995 * 109.47083 * 65.00373 * 3 2 1 6 6 C 1.50706 * 109.46634 * 185.00252 * 3 2 1 7 7 C 1.38281 * 119.92786 * 120.00488 * 6 3 2 8 8 C 1.38116 * 120.06790 * 179.97438 * 7 6 3 9 9 C 1.38866 * 119.92924 * 0.02562 * 8 7 6 10 10 N 1.39928 * 120.06856 * 180.02562 * 9 8 7 11 11 C 1.34776 * 119.99725 * 146.73523 * 10 9 8 12 12 O 1.21287 * 120.00108 * 354.91214 * 11 10 9 13 13 C 1.50707 * 120.00053 * 174.91274 * 11 10 9 14 14 S 1.81404 * 109.47286 * 179.97438 * 13 11 10 15 15 O 1.42092 * 108.57875 * 294.49094 * 14 13 11 16 16 O 1.42103 * 108.57587 * 65.51253 * 14 13 11 17 17 C 1.81392 * 101.91965 * 179.97438 * 14 13 11 18 18 C 1.50704 * 109.46965 * 180.02562 * 17 14 13 19 19 H 1.07997 * 120.00055 * 0.02562 * 18 17 14 20 20 C 1.37873 * 120.00075 * 180.02562 * 18 17 14 21 21 N 1.31522 * 120.00046 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00238 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47181 * 59.99305 * 22 20 18 24 24 H 1.48493 * 109.47481 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46959 * 299.99863 * 22 20 18 26 26 C 1.38874 * 119.86061 * 0.28214 * 9 8 7 27 27 C 1.38114 * 119.92875 * 359.42142 * 26 9 8 28 28 H 1.08993 * 109.47344 * 59.99857 * 1 2 3 29 29 H 1.09001 * 109.46836 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47233 * 299.99425 * 1 2 3 31 31 H 1.08998 * 109.47233 * 240.00575 * 2 1 3 32 32 H 1.08993 * 109.47344 * 120.00143 * 2 1 3 33 33 H 1.09001 * 109.47564 * 59.99837 * 5 3 2 34 34 H 1.09003 * 109.47632 * 179.97438 * 5 3 2 35 35 H 1.08993 * 109.47315 * 299.99656 * 5 3 2 36 36 H 1.07994 * 119.96445 * 359.97409 * 7 6 3 37 37 H 1.08001 * 120.03418 * 180.02562 * 8 7 6 38 38 H 0.96990 * 120.00250 * 327.01553 * 10 9 8 39 39 H 1.08993 * 109.47036 * 300.00259 * 13 11 10 40 40 H 1.08998 * 109.46854 * 59.99901 * 13 11 10 41 41 H 1.08999 * 109.47485 * 300.00285 * 17 14 13 42 42 H 1.08998 * 109.47002 * 60.00598 * 17 14 13 43 43 H 0.97003 * 119.99888 * 180.02562 * 21 20 18 44 44 H 1.08001 * 120.03657 * 179.70563 * 26 9 8 45 45 H 1.07991 * 119.96592 * 180.30012 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 1.6351 2.1265 1.3073 6 6 3.5418 1.4444 -0.1239 7 6 4.1448 2.0744 -1.1971 8 6 5.5210 2.0784 -1.3132 9 6 6.2993 1.4482 -0.3511 10 7 7.6939 1.4509 -0.4656 11 6 8.4609 1.4841 0.6421 12 8 7.9453 1.6048 1.7333 13 6 9.9591 1.3713 0.5250 14 16 10.7026 1.4494 2.1779 15 8 10.4645 2.7407 2.7208 16 8 10.2959 0.3025 2.9118 17 6 12.4704 1.2968 1.8011 18 6 13.2627 1.3417 3.0823 19 1 12.7536 1.4506 4.0285 20 6 14.6374 1.2436 3.0465 21 7 15.2574 1.1105 1.8942 22 14 15.6195 1.2985 4.6346 23 1 15.2025 0.1765 5.5134 24 1 17.0667 1.1737 4.3263 25 1 15.3698 2.5884 5.3266 26 6 5.6904 0.8109 0.7220 27 6 4.3140 0.8158 0.8357 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.0698 1.5875 2.1492 34 1 1.9987 3.1541 1.3076 35 1 0.5489 2.1252 1.3970 36 1 3.5389 2.5639 -1.9451 37 1 5.9914 2.5709 -2.1514 38 1 8.1086 1.4329 -1.3422 39 1 10.2164 0.4221 0.0550 40 1 10.3388 2.1924 -0.0829 41 1 12.6534 0.3494 1.2941 42 1 12.7765 2.1197 1.1553 43 1 16.2246 1.0411 1.8691 44 1 6.2928 0.3159 1.4694 45 1 3.8401 0.3245 1.6726 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905266735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:25 Heat of formation + Delta-G solvation = -99.510316 kcal Electronic energy + Delta-G solvation = -26364.512913 eV Core-core repulsion = 22473.748156 eV Total energy + Delta-G solvation = -3890.764757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.74854 -39.18524 -36.62066 -36.00122 -35.03302 -34.51752 -33.37315 -31.30157 -31.08799 -30.06571 -29.06776 -28.12863 -24.95905 -23.61542 -23.29861 -22.62158 -20.70208 -20.11611 -18.36486 -17.82858 -17.35654 -16.86899 -16.24295 -15.91428 -15.59513 -15.40770 -15.18913 -14.85259 -14.59021 -14.37068 -14.30039 -14.04698 -13.74627 -13.52532 -13.30427 -12.94798 -12.71155 -12.51241 -12.34521 -12.30985 -12.17849 -11.97770 -11.59532 -11.42412 -11.13125 -11.10055 -11.05068 -11.00951 -10.88320 -10.76437 -10.65125 -10.45681 -10.42514 -10.11274 -9.83952 -9.14586 -9.05960 -8.72441 -8.18049 -6.36020 -4.45385 0.79249 1.07399 1.27366 2.38069 2.80263 3.24854 3.26366 3.32309 3.63275 3.73002 4.18731 4.29898 4.37912 4.49390 4.59099 4.73273 4.78647 4.84167 4.87247 5.00616 5.08517 5.09926 5.21287 5.22068 5.27572 5.31967 5.38259 5.41322 5.46413 5.61112 5.67697 5.70568 5.74195 5.87412 5.98852 6.03019 6.16298 6.16948 6.35008 6.50113 6.57695 6.61900 6.87617 7.08465 7.45886 7.71467 7.84666 8.56498 9.21989 10.75780 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.033356 B = 0.002015 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.226398 B =13892.916605 C =14270.315333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.049 4.049 4 H 0.076 0.924 5 C -0.147 4.147 6 C -0.095 4.095 7 C -0.099 4.099 8 C -0.144 4.144 9 C 0.144 3.856 10 N -0.670 5.670 11 C 0.544 3.456 12 O -0.505 6.505 13 C -0.677 4.677 14 S 2.422 3.578 15 O -0.940 6.940 16 O -0.940 6.940 17 C -0.404 4.404 18 C -0.530 4.530 19 H 0.073 0.927 20 C 0.075 3.925 21 N -0.883 5.883 22 Si 0.907 3.093 23 H -0.269 1.269 24 H -0.282 1.282 25 H -0.269 1.269 26 C -0.118 4.118 27 C -0.093 4.093 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.413 0.587 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.269 0.731 44 H 0.138 0.862 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.342 -0.651 -11.773 26.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.067 4.067 4 H 0.094 0.906 5 C -0.204 4.204 6 C -0.096 4.096 7 C -0.118 4.118 8 C -0.164 4.164 9 C 0.050 3.950 10 N -0.315 5.315 11 C 0.331 3.669 12 O -0.379 6.379 13 C -0.799 4.799 14 S 2.602 3.398 15 O -0.937 6.937 16 O -0.937 6.937 17 C -0.539 4.539 18 C -0.569 4.569 19 H 0.091 0.909 20 C -0.131 4.131 21 N -0.519 5.519 22 Si 0.733 3.267 23 H -0.194 1.194 24 H -0.208 1.208 25 H -0.194 1.194 26 C -0.138 4.138 27 C -0.111 4.111 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.250 0.750 39 H 0.176 0.824 40 H 0.175 0.825 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.079 0.921 44 H 0.156 0.844 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -23.987 -0.508 -10.313 26.115 hybrid contribution 1.323 -0.037 -0.858 1.578 sum -22.663 -0.545 -11.171 25.273 Atomic orbital electron populations 1.21833 0.95789 1.01615 1.01882 1.21600 0.95682 0.95762 1.02416 1.20141 0.90840 0.96703 0.99049 0.90591 1.21913 1.01122 1.00716 0.96677 1.19843 0.95315 0.99228 0.95204 1.20790 0.93685 0.99510 0.97795 1.20846 0.93987 1.01260 1.00317 1.17773 0.82244 0.97827 0.97180 1.43443 1.04438 1.73666 1.09966 1.19616 0.87559 0.75375 0.84330 1.90869 1.74501 1.46445 1.26074 1.31225 1.01856 1.12908 1.33909 1.08606 0.80200 0.75425 0.75610 1.93476 1.85706 1.40816 1.73703 1.93473 1.82725 1.51614 1.65931 1.27595 1.12364 1.06792 1.07153 1.20326 0.91999 1.54559 0.90012 0.90857 1.24930 0.97299 0.93495 0.97355 1.69935 1.09703 1.47315 1.24927 0.86386 0.78366 0.79564 0.82416 1.19363 1.20755 1.19362 1.21256 0.95011 0.99141 0.98423 1.20863 0.92760 0.99016 0.98502 0.92823 0.92793 0.92409 0.91873 0.91683 0.92322 0.92514 0.92228 0.85836 0.85693 0.75026 0.82414 0.82505 0.89583 0.89596 0.92137 0.84438 0.85727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.67 37.16 0.36 -0.52 16 2 C -0.12 -0.80 5.14 -26.73 -0.14 -0.94 16 3 C -0.05 -0.37 2.56 -91.77 -0.23 -0.60 16 4 H 0.08 0.51 7.87 -51.93 -0.41 0.10 16 5 C -0.15 -1.09 8.76 37.15 0.33 -0.76 16 6 C -0.10 -0.92 4.78 -104.59 -0.50 -1.42 16 7 C -0.10 -0.92 9.66 -39.61 -0.38 -1.30 16 8 C -0.14 -1.44 9.96 -39.39 -0.39 -1.83 16 9 C 0.14 1.80 6.28 -83.69 -0.53 1.28 16 10 N -0.67 -7.99 5.34 -9.86 -0.05 -8.04 16 11 C 0.54 8.64 7.59 -10.98 -0.08 8.56 16 12 O -0.50 -10.18 13.32 2.56 0.03 -10.14 16 13 C -0.68 -9.51 6.29 36.01 0.23 -9.28 16 14 S 2.42 50.66 3.88 -107.50 -0.42 50.24 16 15 O -0.94 -22.82 17.95 -59.52 -1.07 -23.89 16 16 O -0.94 -22.64 17.94 -59.53 -1.07 -23.70 16 17 C -0.40 -9.24 5.56 36.01 0.20 -9.04 16 18 C -0.53 -14.50 9.13 -34.44 -0.31 -14.81 16 19 H 0.07 2.01 7.71 -52.49 -0.40 1.60 16 20 C 0.08 2.04 5.46 -17.82 -0.10 1.95 16 21 N -0.88 -24.34 13.29 55.43 0.74 -23.60 16 22 Si 0.91 20.91 29.54 -169.99 -5.02 15.89 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 C -0.12 -1.62 8.66 -39.39 -0.34 -1.96 16 27 C -0.09 -1.05 8.75 -39.61 -0.35 -1.40 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.32 6.57 -51.93 -0.34 -0.03 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.47 7.56 -51.93 -0.39 0.08 16 33 H 0.06 0.46 7.38 -51.93 -0.38 0.08 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 36 H 0.12 0.85 7.94 -52.49 -0.42 0.44 16 37 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.41 3.25 8.82 -40.82 -0.36 2.89 16 39 H 0.16 1.65 8.14 -51.93 -0.42 1.22 16 40 H 0.16 1.63 8.14 -51.92 -0.42 1.21 16 41 H 0.09 1.87 8.14 -51.92 -0.42 1.45 16 42 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 43 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.14 2.15 6.43 -52.49 -0.34 1.81 16 45 H 0.12 1.23 7.15 -52.49 -0.38 0.86 16 LS Contribution 386.32 15.07 5.82 5.82 Total: -1.00 -36.74 386.32 -9.98 -46.72 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.70 Total: 2.80 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: -2.24 Total: -32.09 kcal Atomic # 7 Polarization: -32.33 SS G_CDS: 0.68 Total: -31.64 kcal Atomic # 8 Polarization: -55.64 SS G_CDS: -2.10 Total: -57.74 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 50.66 SS G_CDS: -0.42 Total: 50.24 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.74 -9.98 -46.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.787 kcal (2) G-P(sol) polarization free energy of solvation -36.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds