Wall clock time and date at job start Tue Mar 31 2020 22:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46550 * 2 1 4 4 H 1.09000 * 109.47516 * 305.00157 * 3 2 1 5 5 C 1.52995 * 109.47083 * 65.00373 * 3 2 1 6 6 C 1.50706 * 109.46634 * 185.00252 * 3 2 1 7 7 C 1.38281 * 119.92786 * 120.00488 * 6 3 2 8 8 C 1.38116 * 120.06790 * 179.97438 * 7 6 3 9 9 C 1.38866 * 119.92924 * 0.02562 * 8 7 6 10 10 N 1.39928 * 120.06856 * 180.02562 * 9 8 7 11 11 C 1.34776 * 119.99725 * 146.73523 * 10 9 8 12 12 O 1.21287 * 120.00108 * 354.91214 * 11 10 9 13 13 C 1.50707 * 120.00053 * 174.91274 * 11 10 9 14 14 S 1.81404 * 109.47286 * 179.97438 * 13 11 10 15 15 O 1.42092 * 108.57875 * 294.49094 * 14 13 11 16 16 O 1.42103 * 108.57587 * 65.51253 * 14 13 11 17 17 C 1.81392 * 101.91965 * 179.97438 * 14 13 11 18 18 C 1.50704 * 109.46965 * 180.02562 * 17 14 13 19 19 H 1.07997 * 120.00055 * 0.02562 * 18 17 14 20 20 C 1.37873 * 120.00075 * 180.02562 * 18 17 14 21 21 N 1.31522 * 120.00046 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00238 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47181 * 59.99305 * 22 20 18 24 24 H 1.48493 * 109.47481 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46959 * 299.99863 * 22 20 18 26 26 C 1.38874 * 119.86061 * 0.28214 * 9 8 7 27 27 C 1.38114 * 119.92875 * 359.42142 * 26 9 8 28 28 H 1.08993 * 109.47344 * 59.99857 * 1 2 3 29 29 H 1.09001 * 109.46836 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47233 * 299.99425 * 1 2 3 31 31 H 1.08998 * 109.47233 * 240.00575 * 2 1 3 32 32 H 1.08993 * 109.47344 * 120.00143 * 2 1 3 33 33 H 1.09001 * 109.47564 * 59.99837 * 5 3 2 34 34 H 1.09003 * 109.47632 * 179.97438 * 5 3 2 35 35 H 1.08993 * 109.47315 * 299.99656 * 5 3 2 36 36 H 1.07994 * 119.96445 * 359.97409 * 7 6 3 37 37 H 1.08001 * 120.03418 * 180.02562 * 8 7 6 38 38 H 0.96990 * 120.00250 * 327.01553 * 10 9 8 39 39 H 1.08993 * 109.47036 * 300.00259 * 13 11 10 40 40 H 1.08998 * 109.46854 * 59.99901 * 13 11 10 41 41 H 1.08999 * 109.47485 * 300.00285 * 17 14 13 42 42 H 1.08998 * 109.47002 * 60.00598 * 17 14 13 43 43 H 0.97003 * 119.99888 * 180.02562 * 21 20 18 44 44 H 1.08001 * 120.03657 * 179.70563 * 26 9 8 45 45 H 1.07991 * 119.96592 * 180.30012 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 1.6351 2.1265 1.3073 6 6 3.5418 1.4444 -0.1239 7 6 4.1448 2.0744 -1.1971 8 6 5.5210 2.0784 -1.3132 9 6 6.2993 1.4482 -0.3511 10 7 7.6939 1.4509 -0.4656 11 6 8.4609 1.4841 0.6421 12 8 7.9453 1.6048 1.7333 13 6 9.9591 1.3713 0.5250 14 16 10.7026 1.4494 2.1779 15 8 10.4645 2.7407 2.7208 16 8 10.2959 0.3025 2.9118 17 6 12.4704 1.2968 1.8011 18 6 13.2627 1.3417 3.0823 19 1 12.7536 1.4506 4.0285 20 6 14.6374 1.2436 3.0465 21 7 15.2574 1.1105 1.8942 22 14 15.6195 1.2985 4.6346 23 1 15.2025 0.1765 5.5134 24 1 17.0667 1.1737 4.3263 25 1 15.3698 2.5884 5.3266 26 6 5.6904 0.8109 0.7220 27 6 4.3140 0.8158 0.8357 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.0698 1.5875 2.1492 34 1 1.9987 3.1541 1.3076 35 1 0.5489 2.1252 1.3970 36 1 3.5389 2.5639 -1.9451 37 1 5.9914 2.5709 -2.1514 38 1 8.1086 1.4329 -1.3422 39 1 10.2164 0.4221 0.0550 40 1 10.3388 2.1924 -0.0829 41 1 12.6534 0.3494 1.2941 42 1 12.7765 2.1197 1.1553 43 1 16.2246 1.0411 1.8691 44 1 6.2928 0.3159 1.4694 45 1 3.8401 0.3245 1.6726 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905266735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:24 Heat of formation + Delta-G solvation = -125.561708 kcal Electronic energy + Delta-G solvation = -26365.642586 eV Core-core repulsion = 22473.748156 eV Total energy + Delta-G solvation = -3891.894430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.79638 -40.11076 -37.79524 -37.43727 -36.79886 -35.49115 -35.36655 -32.31200 -31.91826 -31.09280 -30.77413 -28.93524 -25.74388 -25.42339 -24.17032 -23.46548 -21.75710 -20.77778 -19.78430 -19.23268 -18.70238 -18.52632 -17.42245 -17.20360 -17.02766 -16.67461 -16.40639 -16.13204 -15.96385 -15.39036 -15.28984 -14.97170 -14.68744 -14.44793 -14.32633 -14.09133 -13.99849 -13.71751 -13.63431 -13.39419 -13.16284 -12.93602 -12.87879 -12.86967 -12.71455 -12.59021 -12.52450 -12.31790 -11.99859 -11.81799 -11.74824 -11.73952 -11.43107 -11.32629 -11.14021 -10.93461 -10.75785 -9.90133 -9.06965 -8.40831 -6.55801 -0.85112 0.17545 0.43480 1.25139 1.38725 1.41019 1.49346 1.72385 2.16222 2.32705 2.79608 2.93346 2.97402 3.26503 3.40960 3.74292 3.83109 3.97820 4.04196 4.10519 4.20272 4.22346 4.43756 4.47497 4.49729 4.59144 4.65129 4.73735 4.77135 4.78323 4.79633 5.03756 5.07980 5.14505 5.17359 5.21998 5.29055 5.31520 5.38222 5.41952 5.46160 5.55629 5.73537 5.75688 6.02262 6.13294 6.52288 6.82618 7.14198 8.71013 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.033356 B = 0.002015 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.226398 B =13892.916605 C =14270.315333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.045 4.045 4 H 0.094 0.906 5 C -0.147 4.147 6 C -0.092 4.092 7 C -0.098 4.098 8 C -0.134 4.134 9 C 0.118 3.882 10 N -0.645 5.645 11 C 0.534 3.466 12 O -0.559 6.559 13 C -0.643 4.643 14 S 2.431 3.569 15 O -0.986 6.986 16 O -0.986 6.986 17 C -0.415 4.415 18 C -0.567 4.567 19 H 0.056 0.944 20 C 0.029 3.971 21 N -0.904 5.904 22 Si 0.957 3.043 23 H -0.267 1.267 24 H -0.266 1.266 25 H -0.267 1.267 26 C -0.147 4.147 27 C -0.104 4.104 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.435 0.565 39 H 0.205 0.795 40 H 0.206 0.794 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.275 0.725 44 H 0.105 0.895 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.656 -0.057 -14.842 28.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.064 4.064 4 H 0.112 0.888 5 C -0.204 4.204 6 C -0.092 4.092 7 C -0.116 4.116 8 C -0.154 4.154 9 C 0.024 3.976 10 N -0.292 5.292 11 C 0.321 3.679 12 O -0.437 6.437 13 C -0.773 4.773 14 S 2.618 3.382 15 O -0.983 6.983 16 O -0.983 6.983 17 C -0.549 4.549 18 C -0.605 4.605 19 H 0.075 0.925 20 C -0.174 4.174 21 N -0.541 5.541 22 Si 0.780 3.220 23 H -0.192 1.192 24 H -0.190 1.190 25 H -0.192 1.192 26 C -0.167 4.167 27 C -0.123 4.123 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.174 0.826 37 H 0.175 0.825 38 H 0.276 0.724 39 H 0.222 0.778 40 H 0.223 0.777 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.084 0.916 44 H 0.124 0.876 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -25.253 0.082 -13.367 28.573 hybrid contribution 1.557 -0.233 -0.043 1.575 sum -23.697 -0.151 -13.411 27.229 Atomic orbital electron populations 1.21815 0.94667 1.01986 1.02408 1.21576 0.96622 0.95244 1.01900 1.20188 0.89283 0.97263 0.99643 0.88782 1.21916 1.02079 1.00103 0.96346 1.20152 0.96497 0.97980 0.94605 1.21235 0.93823 0.98635 0.97949 1.21188 0.94203 0.99934 1.00048 1.17979 0.82472 0.99222 0.97924 1.43166 1.04223 1.71938 1.09892 1.19866 0.88256 0.75182 0.84550 1.90872 1.75380 1.49235 1.28254 1.30759 1.00461 1.17698 1.28359 1.07601 0.79145 0.73706 0.77797 1.93418 1.85848 1.42273 1.76732 1.93417 1.82799 1.52651 1.69417 1.27600 1.14276 1.07528 1.05483 1.20716 0.93255 1.55180 0.91379 0.92546 1.25697 0.98205 0.93102 1.00402 1.69973 1.10200 1.47653 1.26226 0.85610 0.77814 0.79524 0.79051 1.19187 1.18998 1.19166 1.21197 0.95893 1.00771 0.98860 1.20954 0.92159 0.99726 0.99414 0.91951 0.92577 0.92186 0.92041 0.92645 0.93436 0.93118 0.90672 0.82570 0.82532 0.72426 0.77817 0.77673 0.88607 0.88562 0.91644 0.87639 0.85592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.67 71.98 0.70 -0.73 16 2 C -0.12 -1.42 5.14 30.60 0.16 -1.26 16 3 C -0.05 -0.59 2.56 -11.54 -0.03 -0.61 16 4 H 0.09 0.91 7.87 -2.39 -0.02 0.89 16 5 C -0.15 -1.99 8.76 71.98 0.63 -1.36 16 6 C -0.09 -1.63 4.78 -19.84 -0.09 -1.72 16 7 C -0.10 -1.49 9.66 22.25 0.21 -1.28 16 8 C -0.13 -2.26 9.96 22.39 0.22 -2.04 16 9 C 0.12 2.80 6.28 38.15 0.24 3.04 16 10 N -0.65 -13.95 5.34 -303.50 -1.62 -15.57 16 11 C 0.53 16.36 7.59 87.66 0.67 17.03 16 12 O -0.56 -23.30 13.32 -0.19 0.00 -23.30 16 13 C -0.64 -16.38 6.29 71.24 0.45 -15.93 16 14 S 2.43 103.25 3.88 -56.49 -0.22 103.03 16 15 O -0.99 -49.50 17.95 -125.76 -2.26 -51.76 16 16 O -0.99 -49.44 17.94 -125.74 -2.26 -51.69 16 17 C -0.42 -19.10 5.56 71.24 0.40 -18.71 16 18 C -0.57 -31.79 9.13 25.60 0.23 -31.56 16 19 H 0.06 3.24 7.71 -2.91 -0.02 3.22 16 20 C 0.03 1.61 5.46 84.65 0.46 2.07 16 21 N -0.90 -49.70 13.29 21.45 0.28 -49.42 16 22 Si 0.96 43.04 29.54 68.60 2.03 45.07 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 26 C -0.15 -4.16 8.66 22.39 0.19 -3.97 16 27 C -0.10 -2.40 8.75 22.25 0.19 -2.20 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.54 6.57 -2.39 -0.02 0.52 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.78 7.56 -2.39 -0.02 0.76 16 33 H 0.05 0.74 7.38 -2.39 -0.02 0.72 16 34 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 0.78 6.56 -2.39 -0.02 0.76 16 36 H 0.16 1.38 7.94 -2.91 -0.02 1.35 16 37 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 38 H 0.44 5.11 8.82 -92.72 -0.82 4.30 16 39 H 0.20 3.38 8.14 -2.39 -0.02 3.36 16 40 H 0.21 3.31 8.14 -2.39 -0.02 3.29 16 41 H 0.10 4.15 8.14 -2.39 -0.02 4.13 16 42 H 0.10 4.16 8.14 -2.39 -0.02 4.14 16 43 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 44 H 0.11 3.62 6.43 -2.91 -0.02 3.60 16 45 H 0.13 2.69 7.15 -2.92 -0.02 2.67 16 Total: -1.00 -85.25 386.32 0.77 -84.48 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.18 Total: 18.38 kcal Atomic # 6 Polarization: -63.86 SS G_CDS: 4.63 Total: -59.23 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: -1.34 Total: -64.99 kcal Atomic # 8 Polarization: -122.23 SS G_CDS: -4.52 Total: -126.75 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: 103.25 SS G_CDS: -0.22 Total: 103.03 kcal Total: -85.25 0.77 -84.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.081 kcal (2) G-P(sol) polarization free energy of solvation -85.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds