Wall clock time and date at job start Tue Mar 31 2020 22:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47422 * 2 1 4 4 N 1.46503 * 109.47367 * 180.02562 * 3 2 1 5 5 C 1.36488 * 124.77996 * 90.02298 * 4 3 2 6 6 C 1.50705 * 125.41518 * 359.96666 * 5 4 3 7 7 C 1.34349 * 109.16578 * 179.97438 * 5 4 3 8 8 C 1.46905 * 106.35727 * 359.97438 * 7 5 4 9 9 C 1.46448 * 127.06155 * 179.97438 * 8 7 5 10 10 O 1.21346 * 119.99734 * 180.02562 * 9 8 7 11 11 C 1.50699 * 120.00167 * 0.02794 * 9 8 7 12 12 O 1.45206 * 109.47021 * 179.97438 * 11 9 8 13 13 C 1.34224 * 117.00077 * 180.02562 * 12 11 9 14 14 O 1.20833 * 120.00103 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00302 * 180.02562 * 13 12 11 16 16 S 1.80999 * 109.47427 * 180.02562 * 15 13 12 17 17 C 1.76202 * 100.00120 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99931 * 0.02562 * 17 16 15 19 19 C 1.38794 * 119.99878 * 179.97438 * 17 16 15 20 20 N 1.31637 * 120.00238 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00119 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47095 * 90.00018 * 21 19 17 23 23 H 1.48496 * 109.47271 * 210.00189 * 21 19 17 24 24 H 1.48500 * 109.46697 * 330.00258 * 21 19 17 25 25 C 1.34490 * 124.77281 * 270.33401 * 4 3 2 26 26 C 1.50696 * 125.92422 * 0.04366 * 25 4 3 27 27 H 1.08994 * 109.47134 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47074 * 299.99992 * 1 2 3 29 29 H 1.08996 * 109.47304 * 59.99907 * 1 2 3 30 30 H 1.08998 * 109.47074 * 240.00008 * 2 1 3 31 31 H 1.09001 * 109.47214 * 120.00573 * 2 1 3 32 32 H 1.08998 * 109.46989 * 59.99956 * 3 2 1 33 33 H 1.09001 * 109.47394 * 300.00463 * 3 2 1 34 34 H 1.09000 * 109.46690 * 270.01372 * 6 5 4 35 35 H 1.08998 * 109.47462 * 30.01491 * 6 5 4 36 36 H 1.09001 * 109.46895 * 150.01397 * 6 5 4 37 37 H 1.08000 * 126.82428 * 180.02562 * 7 5 4 38 38 H 1.09000 * 109.47247 * 60.00028 * 11 9 8 39 39 H 1.09001 * 109.47358 * 299.99454 * 11 9 8 40 40 H 1.09009 * 109.46972 * 299.99362 * 15 13 12 41 41 H 1.08995 * 109.47473 * 59.99636 * 15 13 12 42 42 H 0.97003 * 119.99824 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.47391 * 270.17412 * 26 25 4 44 44 H 1.09008 * 109.47142 * 30.17820 * 26 25 4 45 45 H 1.09007 * 109.47381 * 150.17189 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2831 1.4430 -1.1220 6 6 3.7719 1.4431 -2.5397 7 6 5.5772 1.4434 -0.7609 8 6 5.5969 1.4436 0.7080 9 6 6.7772 1.4434 1.5749 10 8 6.6441 1.4432 2.7810 11 6 8.1571 1.4437 0.9690 12 8 9.1506 1.4441 2.0280 13 6 10.4397 1.4449 1.6541 14 8 10.7285 1.4448 0.4808 15 6 11.5269 1.4448 2.6976 16 16 13.1439 1.4468 1.8843 17 6 14.1970 1.4471 3.2969 18 1 13.7699 1.4458 4.2889 19 6 15.5755 1.4480 3.1349 20 7 16.0961 1.4491 1.9259 21 14 16.6920 1.4476 4.6326 22 1 16.9886 0.0475 5.0284 23 1 17.9595 2.1486 4.3052 24 1 16.0153 2.1465 5.7545 25 6 4.2725 1.4358 1.1038 26 6 3.7750 1.4264 2.5262 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.6489 0.4154 -2.8815 35 1 2.8114 1.9567 -2.5796 36 1 4.4858 1.9572 -3.1833 37 1 6.4330 1.4442 -1.4197 38 1 8.2831 2.3338 0.3527 39 1 8.2833 0.5538 0.3523 40 1 11.4329 2.3345 3.3204 41 1 11.4337 0.5545 3.3194 42 1 17.0595 1.4501 1.8127 43 1 3.6514 2.4517 2.8748 44 1 2.8167 0.9088 2.5725 45 1 4.4969 0.9115 3.1603 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914684513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:26 Heat of formation + Delta-G solvation = -92.408992 kcal Electronic energy + Delta-G solvation = -25768.396964 eV Core-core repulsion = 21877.940144 eV Total energy + Delta-G solvation = -3890.456820 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.84867 -40.08354 -38.66487 -35.91781 -35.63544 -33.05471 -32.43989 -31.89312 -30.27043 -29.54931 -28.55494 -26.33664 -25.50348 -25.04494 -22.70729 -21.99409 -20.94148 -19.87221 -18.64340 -17.83465 -17.07631 -16.92017 -16.47029 -16.01911 -15.80411 -15.71692 -14.96259 -14.80344 -14.54212 -14.35886 -14.24410 -13.93962 -13.86581 -13.62525 -13.38369 -13.03488 -12.92168 -12.81821 -12.67551 -12.63633 -12.54315 -12.40061 -12.16450 -11.92306 -11.73481 -11.66592 -11.45886 -11.05680 -11.02549 -10.78555 -10.48520 -10.05562 -9.87578 -9.61030 -9.07104 -8.93576 -8.31010 -8.29238 -6.55215 -6.23004 -3.95152 1.19404 1.98586 2.30821 2.65055 2.71252 3.04925 3.24348 3.26979 3.32107 3.53487 4.00979 4.12644 4.17997 4.21112 4.30052 4.46080 4.52566 4.63323 4.74895 4.78020 4.93367 5.00375 5.12603 5.12861 5.14559 5.20504 5.23299 5.28344 5.29463 5.32620 5.33773 5.40699 5.45791 5.55830 5.57522 5.61997 5.70225 5.86305 5.97981 6.17027 6.49458 6.69664 6.77760 6.88132 7.60271 7.62252 8.21739 8.35255 9.22635 10.84513 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.032556 B = 0.001734 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.859417 B =16146.635966 C =16817.890728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.141 4.141 3 C 0.095 3.905 4 N -0.433 5.433 5 C 0.007 3.993 6 C -0.084 4.084 7 C -0.151 4.151 8 C -0.262 4.262 9 C 0.429 3.571 10 O -0.450 6.450 11 C 0.027 3.973 12 O -0.343 6.343 13 C 0.479 3.521 14 O -0.489 6.489 15 C -0.128 4.128 16 S -0.059 6.059 17 C -0.535 4.535 18 H 0.076 0.924 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.922 3.078 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.271 1.271 25 C 0.114 3.886 26 C -0.097 4.097 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.150 0.850 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.269 0.731 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.267 -0.766 -6.438 34.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.179 4.179 3 C -0.026 4.026 4 N -0.110 5.110 5 C -0.100 4.100 6 C -0.141 4.141 7 C -0.174 4.174 8 C -0.270 4.270 9 C 0.307 3.693 10 O -0.326 6.326 11 C -0.048 4.048 12 O -0.261 6.261 13 C 0.321 3.679 14 O -0.375 6.375 15 C -0.275 4.275 16 S 0.168 5.832 17 C -0.683 4.683 18 H 0.095 0.905 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.748 3.252 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.196 1.196 25 C -0.003 4.003 26 C -0.154 4.154 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.168 0.832 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -34.200 -0.750 -7.439 35.007 hybrid contribution 0.410 -0.004 1.857 1.902 sum -33.789 -0.754 -5.581 34.255 Atomic orbital electron populations 1.21701 0.94210 1.02659 1.02234 1.21917 0.96834 0.95544 1.03638 1.22036 0.77098 0.98783 1.04700 1.43641 1.06236 1.55903 1.05183 1.20192 0.90409 1.10809 0.88604 1.20345 1.01422 1.02704 0.89655 1.21903 0.95520 1.06961 0.93011 1.20656 0.91935 1.20547 0.93864 1.21074 0.88043 0.71999 0.88162 1.90531 1.88566 1.37076 1.16426 1.23127 0.86343 1.04932 0.90372 1.86596 1.16111 1.84761 1.38617 1.23383 0.82168 0.72257 0.90107 1.90662 1.82929 1.44363 1.19553 1.23296 0.97553 1.06669 1.00025 1.85367 0.89812 1.96892 1.11162 1.22860 0.93078 1.59205 0.93184 0.90542 1.24998 0.97131 0.94364 0.97005 1.70018 1.12525 1.46757 1.21018 0.86120 0.79307 0.78403 0.81412 1.20209 1.20737 1.19576 1.20787 0.89604 1.00778 0.89171 1.20616 1.01902 1.03569 0.89352 0.91827 0.92267 0.92298 0.90989 0.91030 0.88976 0.88859 0.91005 0.91915 0.89868 0.83191 0.88060 0.88071 0.87784 0.87784 0.92118 0.90197 0.91658 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.38 9.91 37.16 0.37 -0.02 16 2 C -0.14 -0.56 6.26 -26.74 -0.17 -0.73 16 3 C 0.10 0.42 5.35 -4.04 -0.02 0.40 16 4 N -0.43 -3.40 2.68 -107.62 -0.29 -3.69 16 5 C 0.01 0.05 6.84 -81.89 -0.56 -0.51 16 6 C -0.08 -0.42 10.05 36.01 0.36 -0.06 16 7 C -0.15 -1.50 10.58 -37.45 -0.40 -1.89 16 8 C -0.26 -3.10 6.29 -103.09 -0.65 -3.75 16 9 C 0.43 6.05 7.20 -31.00 -0.22 5.83 16 10 O -0.45 -7.46 15.04 -14.15 -0.21 -7.68 16 11 C 0.03 0.40 5.51 36.01 0.20 0.60 16 12 O -0.34 -6.23 9.75 -45.88 -0.45 -6.68 16 13 C 0.48 9.77 7.98 36.00 0.29 10.06 16 14 O -0.49 -10.96 15.61 -18.76 -0.29 -11.26 16 15 C -0.13 -2.75 6.27 36.00 0.23 -2.52 16 16 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 17 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 18 H 0.08 2.08 7.80 -52.49 -0.41 1.67 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.10 13.22 55.49 0.73 -25.36 16 21 Si 0.92 21.54 29.55 -169.99 -5.02 16.51 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C 0.11 1.14 6.94 -81.44 -0.56 0.57 16 26 C -0.10 -0.81 9.27 36.00 0.33 -0.47 16 27 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.06 0.12 8.14 -51.93 -0.42 -0.31 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 32 H 0.09 0.33 7.51 -51.93 -0.39 -0.06 16 33 H 0.09 0.29 6.88 -51.93 -0.36 -0.07 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.23 6.92 -51.93 -0.36 -0.13 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.10 1.34 8.13 -51.93 -0.42 0.92 16 39 H 0.10 1.34 8.13 -51.93 -0.42 0.92 16 40 H 0.10 2.10 8.14 -51.91 -0.42 1.68 16 41 H 0.10 2.09 8.14 -51.92 -0.42 1.67 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.38 7.56 -51.92 -0.39 -0.01 16 45 H 0.10 1.03 6.53 -51.93 -0.34 0.69 16 LS Contribution 398.40 15.07 6.00 6.00 Total: -1.00 -35.69 398.40 -9.22 -44.91 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -6.88 Total: -3.44 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -0.61 Total: -5.51 kcal Atomic # 7 Polarization: -29.50 SS G_CDS: 0.45 Total: -29.05 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.95 Total: -25.61 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.69 -9.22 -44.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914684513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.497 kcal (2) G-P(sol) polarization free energy of solvation -35.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds