Wall clock time and date at job start Tue Mar 31 2020 22:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47422 * 2 1 4 4 N 1.46503 * 109.47367 * 180.02562 * 3 2 1 5 5 C 1.36488 * 124.77996 * 90.02298 * 4 3 2 6 6 C 1.50705 * 125.41518 * 359.96666 * 5 4 3 7 7 C 1.34349 * 109.16578 * 179.97438 * 5 4 3 8 8 C 1.46905 * 106.35727 * 359.97438 * 7 5 4 9 9 C 1.46448 * 127.06155 * 179.97438 * 8 7 5 10 10 O 1.21346 * 119.99734 * 180.02562 * 9 8 7 11 11 C 1.50699 * 120.00167 * 0.02794 * 9 8 7 12 12 O 1.45206 * 109.47021 * 179.97438 * 11 9 8 13 13 C 1.34224 * 117.00077 * 180.02562 * 12 11 9 14 14 O 1.20833 * 120.00103 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00302 * 180.02562 * 13 12 11 16 16 S 1.80999 * 109.47427 * 180.02562 * 15 13 12 17 17 C 1.76202 * 100.00120 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99931 * 0.02562 * 17 16 15 19 19 C 1.38794 * 119.99878 * 179.97438 * 17 16 15 20 20 N 1.31637 * 120.00238 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00119 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47095 * 90.00018 * 21 19 17 23 23 H 1.48496 * 109.47271 * 210.00189 * 21 19 17 24 24 H 1.48500 * 109.46697 * 330.00258 * 21 19 17 25 25 C 1.34490 * 124.77281 * 270.33401 * 4 3 2 26 26 C 1.50696 * 125.92422 * 0.04366 * 25 4 3 27 27 H 1.08994 * 109.47134 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47074 * 299.99992 * 1 2 3 29 29 H 1.08996 * 109.47304 * 59.99907 * 1 2 3 30 30 H 1.08998 * 109.47074 * 240.00008 * 2 1 3 31 31 H 1.09001 * 109.47214 * 120.00573 * 2 1 3 32 32 H 1.08998 * 109.46989 * 59.99956 * 3 2 1 33 33 H 1.09001 * 109.47394 * 300.00463 * 3 2 1 34 34 H 1.09000 * 109.46690 * 270.01372 * 6 5 4 35 35 H 1.08998 * 109.47462 * 30.01491 * 6 5 4 36 36 H 1.09001 * 109.46895 * 150.01397 * 6 5 4 37 37 H 1.08000 * 126.82428 * 180.02562 * 7 5 4 38 38 H 1.09000 * 109.47247 * 60.00028 * 11 9 8 39 39 H 1.09001 * 109.47358 * 299.99454 * 11 9 8 40 40 H 1.09009 * 109.46972 * 299.99362 * 15 13 12 41 41 H 1.08995 * 109.47473 * 59.99636 * 15 13 12 42 42 H 0.97003 * 119.99824 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.47391 * 270.17412 * 26 25 4 44 44 H 1.09008 * 109.47142 * 30.17820 * 26 25 4 45 45 H 1.09007 * 109.47381 * 150.17189 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2831 1.4430 -1.1220 6 6 3.7719 1.4431 -2.5397 7 6 5.5772 1.4434 -0.7609 8 6 5.5969 1.4436 0.7080 9 6 6.7772 1.4434 1.5749 10 8 6.6441 1.4432 2.7810 11 6 8.1571 1.4437 0.9690 12 8 9.1506 1.4441 2.0280 13 6 10.4397 1.4449 1.6541 14 8 10.7285 1.4448 0.4808 15 6 11.5269 1.4448 2.6976 16 16 13.1439 1.4468 1.8843 17 6 14.1970 1.4471 3.2969 18 1 13.7699 1.4458 4.2889 19 6 15.5755 1.4480 3.1349 20 7 16.0961 1.4491 1.9259 21 14 16.6920 1.4476 4.6326 22 1 16.9886 0.0475 5.0284 23 1 17.9595 2.1486 4.3052 24 1 16.0153 2.1465 5.7545 25 6 4.2725 1.4358 1.1038 26 6 3.7750 1.4264 2.5262 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.6489 0.4154 -2.8815 35 1 2.8114 1.9567 -2.5796 36 1 4.4858 1.9572 -3.1833 37 1 6.4330 1.4442 -1.4197 38 1 8.2831 2.3338 0.3527 39 1 8.2833 0.5538 0.3523 40 1 11.4329 2.3345 3.3204 41 1 11.4337 0.5545 3.3194 42 1 17.0595 1.4501 1.8127 43 1 3.6514 2.4517 2.8748 44 1 2.8167 0.9088 2.5725 45 1 4.4969 0.9115 3.1603 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914684513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:25 Heat of formation + Delta-G solvation = -111.003760 kcal Electronic energy + Delta-G solvation = -25769.203294 eV Core-core repulsion = 21877.940144 eV Total energy + Delta-G solvation = -3891.263150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.54144 -41.60086 -39.84956 -37.46269 -36.05161 -34.60916 -33.67213 -32.60480 -31.70635 -30.29042 -29.61042 -27.71216 -26.89008 -25.76485 -23.36065 -22.59657 -22.35858 -20.71253 -19.97781 -19.35530 -18.63927 -17.90894 -17.81426 -17.07813 -16.88918 -16.49458 -16.46242 -16.08421 -15.76750 -15.72005 -15.38438 -14.74285 -14.58053 -14.53464 -14.25019 -14.10940 -14.04886 -13.63282 -13.56819 -13.49050 -13.24173 -13.16581 -13.03558 -12.95756 -12.89330 -12.76857 -12.67061 -12.32518 -12.08774 -11.90841 -11.80355 -11.74137 -11.71167 -11.15659 -10.76400 -10.39596 -9.66123 -9.00668 -8.73592 -8.37307 -6.17156 0.24945 0.93255 1.06743 1.29850 1.39995 1.43694 1.54893 1.70294 1.88924 2.12394 2.24003 2.97620 3.02913 3.29994 3.65458 3.70983 3.80598 3.83613 3.88826 4.03948 4.06403 4.15222 4.16772 4.25662 4.29851 4.40447 4.43236 4.48829 4.56926 4.62189 4.68961 4.75907 4.81858 4.85480 4.98844 5.09621 5.12323 5.13708 5.15470 5.28214 5.36587 5.41537 5.75449 6.07445 6.18512 6.26492 6.53373 6.65347 7.04364 8.72000 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.032556 B = 0.001734 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.859417 B =16146.635966 C =16817.890728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C 0.088 3.912 4 N -0.427 5.427 5 C 0.013 3.987 6 C -0.083 4.083 7 C -0.172 4.172 8 C -0.296 4.296 9 C 0.433 3.567 10 O -0.486 6.486 11 C 0.022 3.978 12 O -0.345 6.345 13 C 0.489 3.511 14 O -0.514 6.514 15 C -0.110 4.110 16 S -0.130 6.130 17 C -0.551 4.551 18 H 0.084 0.916 19 C 0.018 3.982 20 N -0.909 5.909 21 Si 1.000 3.000 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.260 1.260 25 C 0.114 3.886 26 C -0.095 4.095 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.156 0.844 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.273 0.727 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.582 -0.590 -6.178 37.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C -0.031 4.031 4 N -0.102 5.102 5 C -0.094 4.094 6 C -0.140 4.140 7 C -0.195 4.195 8 C -0.303 4.303 9 C 0.314 3.686 10 O -0.364 6.364 11 C -0.052 4.052 12 O -0.262 6.262 13 C 0.332 3.668 14 O -0.402 6.402 15 C -0.258 4.258 16 S 0.097 5.903 17 C -0.699 4.699 18 H 0.103 0.897 19 C -0.187 4.187 20 N -0.545 5.545 21 Si 0.822 3.178 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.184 1.184 25 C -0.006 4.006 26 C -0.152 4.152 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.132 0.868 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.174 0.826 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -36.559 -0.577 -7.200 37.266 hybrid contribution 0.907 -0.068 1.689 1.919 sum -35.652 -0.645 -5.511 36.082 Atomic orbital electron populations 1.21679 0.92902 1.02835 1.03032 1.21857 0.97835 0.94941 1.02775 1.22369 0.74844 0.99488 1.06440 1.43910 1.07595 1.54313 1.04410 1.20697 0.90015 1.08675 0.90051 1.20458 1.02413 1.03698 0.87404 1.22086 0.96872 1.08303 0.92231 1.20603 0.91861 1.23236 0.94631 1.21222 0.88355 0.71058 0.87987 1.90515 1.88858 1.39460 1.17617 1.23480 0.85750 1.06163 0.89856 1.86558 1.15500 1.84147 1.39960 1.23031 0.82791 0.71758 0.89249 1.90653 1.83452 1.45675 1.20376 1.23100 0.94551 1.08227 0.99936 1.85434 0.94116 1.97168 1.13538 1.23209 0.93787 1.59484 0.93422 0.89741 1.26104 0.98758 0.93451 1.00431 1.70161 1.13115 1.47633 1.23580 0.84929 0.76889 0.78858 0.77160 1.19233 1.20047 1.18389 1.21009 0.89443 0.99740 0.90399 1.20607 1.02467 1.04032 0.88058 0.92004 0.91687 0.91295 0.91546 0.92272 0.87683 0.86786 0.90040 0.90004 0.89276 0.82623 0.86833 0.86878 0.86179 0.86160 0.91781 0.89515 0.88998 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.37 9.91 71.98 0.71 0.34 16 2 C -0.14 -0.77 6.26 30.59 0.19 -0.58 16 3 C 0.09 0.53 5.35 86.38 0.46 1.00 16 4 N -0.43 -5.88 2.68 -494.41 -1.33 -7.21 16 5 C 0.01 0.19 6.84 40.95 0.28 0.47 16 6 C -0.08 -0.60 10.05 71.24 0.72 0.11 16 7 C -0.17 -3.32 10.58 23.65 0.25 -3.07 16 8 C -0.30 -7.01 6.29 -18.87 -0.12 -7.13 16 9 C 0.43 12.51 7.20 27.83 0.20 12.71 16 10 O -0.49 -16.62 15.04 15.56 0.23 -16.39 16 11 C 0.02 0.64 5.51 71.24 0.39 1.04 16 12 O -0.34 -12.57 9.75 -45.00 -0.44 -13.01 16 13 C 0.49 20.06 7.98 71.23 0.57 20.63 16 14 O -0.51 -23.38 15.61 21.94 0.34 -23.04 16 15 C -0.11 -4.73 6.27 71.23 0.45 -4.28 16 16 S -0.13 -7.22 20.57 -56.49 -1.16 -8.38 16 17 C -0.55 -31.77 9.50 67.95 0.65 -31.12 16 18 H 0.08 4.56 7.80 -2.91 -0.02 4.54 16 19 C 0.02 1.01 5.49 84.86 0.47 1.48 16 20 N -0.91 -55.39 13.22 21.65 0.29 -55.11 16 21 Si 1.00 43.86 29.55 68.60 2.03 45.89 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 24 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 25 C 0.11 2.18 6.94 42.15 0.29 2.47 16 26 C -0.09 -1.50 9.27 71.23 0.66 -0.84 16 27 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 28 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.49 8.10 -2.39 -0.02 0.48 16 32 H 0.10 0.41 7.51 -2.39 -0.02 0.39 16 33 H 0.11 0.26 6.88 -2.39 -0.02 0.25 16 34 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.08 0.30 6.92 -2.39 -0.02 0.29 16 36 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 38 H 0.11 3.05 8.13 -2.39 -0.02 3.03 16 39 H 0.11 3.04 8.13 -2.39 -0.02 3.02 16 40 H 0.12 4.78 8.14 -2.39 -0.02 4.76 16 41 H 0.12 4.79 8.14 -2.40 -0.02 4.77 16 42 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 43 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.09 0.91 7.56 -2.38 -0.02 0.89 16 45 H 0.08 1.65 6.53 -2.38 -0.02 1.63 16 Total: -1.00 -78.47 398.40 7.12 -71.36 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.99 Total: 12.66 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 6.17 Total: -6.78 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -1.04 Total: -62.31 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: 0.14 Total: -52.44 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -7.22 SS G_CDS: -1.16 Total: -8.38 kcal Total: -78.47 7.12 -71.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914684513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.648 kcal (2) G-P(sol) polarization free energy of solvation -78.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds