Wall clock time and date at job start Tue Mar 31 2020 23:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36004 * 117.00028 * 2 1 4 4 C 1.38565 * 120.06984 * 359.97438 * 3 2 1 5 5 C 1.38246 * 119.99513 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.92577 * 180.02562 * 5 4 3 7 7 N 1.46496 * 109.47204 * 89.99541 * 6 5 4 8 8 C 1.34779 * 119.99952 * 179.97438 * 7 6 5 9 9 O 1.21276 * 120.00242 * 0.02562 * 8 7 6 10 10 C 1.50698 * 119.99793 * 180.27921 * 8 7 6 11 11 S 1.81005 * 109.46837 * 179.72343 * 10 8 7 12 12 C 1.76204 * 99.99981 * 180.02562 * 11 10 8 13 13 H 1.08006 * 119.99931 * 359.97438 * 12 11 10 14 14 C 1.38789 * 120.00395 * 180.02562 * 12 11 10 15 15 N 1.31641 * 119.99787 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00448 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47134 * 59.99515 * 16 14 12 18 18 H 1.48497 * 109.47284 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46917 * 299.99782 * 16 14 12 20 20 C 1.38247 * 120.14474 * 0.27419 * 5 4 3 21 21 C 1.38248 * 120.15157 * 359.45024 * 20 5 4 22 22 C 1.38563 * 119.99561 * 0.54900 * 21 20 5 23 23 O 1.35990 * 120.07478 * 179.70476 * 22 21 20 24 24 C 1.42896 * 117.00003 * 354.57700 * 23 22 21 25 25 C 1.52994 * 109.47227 * 84.87946 * 24 23 22 26 26 C 1.53002 * 109.47226 * 204.88111 * 24 23 22 27 27 H 1.09001 * 109.47543 * 300.00528 * 1 2 3 28 28 H 1.09002 * 109.47183 * 59.99964 * 1 2 3 29 29 H 1.08997 * 109.47060 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.99962 * 0.02562 * 4 3 2 31 31 H 1.09002 * 109.47045 * 329.99828 * 6 5 4 32 32 H 1.08999 * 109.47011 * 210.00062 * 6 5 4 33 33 H 0.96997 * 120.00060 * 0.02562 * 7 6 5 34 34 H 1.09000 * 109.47502 * 299.72072 * 10 8 7 35 35 H 1.08999 * 109.47296 * 59.72505 * 10 8 7 36 36 H 0.96999 * 120.00036 * 180.02562 * 15 14 12 37 37 H 1.08003 * 119.92608 * 179.70708 * 20 5 4 38 38 H 1.07997 * 120.00506 * 180.25147 * 21 20 5 39 39 H 1.09008 * 109.46966 * 324.87933 * 24 23 22 40 40 H 1.08994 * 109.47136 * 60.00243 * 25 24 23 41 41 H 1.09002 * 109.47735 * 180.02562 * 25 24 23 42 42 H 1.09008 * 109.47113 * 300.00402 * 25 24 23 43 43 H 1.09000 * 109.47048 * 60.00003 * 26 24 23 44 44 H 1.09006 * 109.47045 * 180.02562 * 26 24 23 45 45 H 1.08994 * 109.47127 * 299.99750 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3748 -0.0005 5 6 1.9224 3.6058 0.0000 6 6 1.1016 4.8697 0.0000 7 7 0.8350 5.2788 1.3812 8 6 0.1137 6.3904 1.6274 9 8 -0.3151 7.0516 0.7056 10 6 -0.1552 6.8147 3.0482 11 16 -1.1348 8.3368 3.0481 12 6 -1.2961 8.5969 4.7834 13 1 -0.8470 7.9021 5.4776 14 6 -2.0012 9.6940 5.2581 15 7 -2.5491 10.5407 4.4119 16 14 -2.1716 9.9702 7.0977 17 1 -0.8239 10.1208 7.7026 18 1 -2.9649 11.2015 7.3420 19 1 -2.8623 8.8073 7.7109 20 6 3.3028 3.6798 -0.0046 21 6 4.0603 2.5233 0.0016 22 6 3.4360 1.2863 0.0011 23 8 4.1795 0.1477 0.0012 24 6 5.5955 0.2976 -0.1185 25 6 6.2000 0.5528 1.2636 26 6 6.1955 -0.9798 -0.7095 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2146 2.3196 -0.0005 31 1 0.1575 4.6898 -0.5143 32 1 1.6503 5.6592 -0.5134 33 1 1.1783 4.7502 2.1184 34 1 -0.7059 6.0283 3.5643 35 1 0.7909 6.9916 3.5598 36 1 -3.0415 11.3077 4.7436 37 1 3.7907 4.6434 -0.0090 38 1 5.1386 2.5840 0.0021 39 1 5.8176 1.1401 -0.7735 40 1 5.9779 -0.2896 1.9185 41 1 7.2801 0.6676 1.1723 42 1 5.7725 1.4629 1.6847 43 1 5.7648 -1.1617 -1.6942 44 1 7.2757 -0.8657 -0.8004 45 1 5.9734 -1.8223 -0.0546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915157835.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:39 Heat of formation + Delta-G solvation = -116.298222 kcal Electronic energy + Delta-G solvation = -25959.009180 eV Core-core repulsion = 22067.516445 eV Total energy + Delta-G solvation = -3891.492735 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.74484 -40.59149 -39.73567 -38.38192 -35.67656 -34.57448 -34.10127 -32.19351 -31.23531 -30.37085 -28.39492 -28.15609 -27.66396 -26.33310 -24.06630 -22.76196 -21.79281 -21.62282 -19.92738 -19.55334 -18.29549 -17.78555 -17.62910 -17.16272 -16.87999 -16.86562 -16.50325 -16.17235 -15.84646 -15.77717 -15.59444 -15.09493 -14.77053 -14.54678 -14.44321 -14.35147 -13.97119 -13.63179 -13.40654 -13.16139 -13.13147 -13.07608 -12.97999 -12.85914 -12.80524 -12.62161 -12.43390 -12.13476 -12.01256 -11.76949 -11.72923 -11.58533 -11.12211 -10.99444 -10.27357 -10.14858 -9.75491 -8.84483 -8.65597 -8.33698 -6.11731 0.14447 0.32077 1.28401 1.44352 1.47835 1.57803 1.61540 2.19593 2.25325 2.29306 2.33194 2.76243 3.00188 3.33986 3.55523 3.74779 3.82904 3.96231 3.99474 4.03602 4.14761 4.16850 4.27939 4.31125 4.33126 4.37557 4.52294 4.53145 4.64308 4.70206 4.72212 4.74746 4.82229 4.86787 4.89995 5.04312 5.18505 5.25732 5.30091 5.37600 5.42480 5.51696 5.63070 6.11939 6.20455 6.48870 6.59894 7.07450 7.22651 8.75152 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017909 B = 0.001918 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.123107 B =14594.311988 C =14942.797855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.328 6.328 3 C 0.077 3.923 4 C -0.152 4.152 5 C -0.105 4.105 6 C 0.169 3.831 7 N -0.709 5.709 8 C 0.536 3.464 9 O -0.564 6.564 10 C -0.130 4.130 11 S -0.149 6.149 12 C -0.547 4.547 13 H 0.082 0.918 14 C 0.013 3.987 15 N -0.911 5.911 16 Si 0.998 3.002 17 H -0.262 1.262 18 H -0.279 1.279 19 H -0.263 1.263 20 C -0.093 4.093 21 C -0.173 4.173 22 C 0.098 3.902 23 O -0.320 6.320 24 C 0.066 3.934 25 C -0.178 4.178 26 C -0.146 4.146 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.117 0.883 30 H 0.146 0.854 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.414 0.586 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.271 0.729 37 H 0.145 0.855 38 H 0.159 0.841 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.093 0.907 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.099 0.901 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.113 -25.722 -8.958 32.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.243 6.243 3 C 0.032 3.968 4 C -0.171 4.171 5 C -0.106 4.106 6 C 0.046 3.954 7 N -0.363 5.363 8 C 0.322 3.678 9 O -0.442 6.442 10 C -0.281 4.281 11 S 0.078 5.922 12 C -0.695 4.695 13 H 0.101 0.899 14 C -0.192 4.192 15 N -0.547 5.547 16 Si 0.819 3.181 17 H -0.187 1.187 18 H -0.204 1.204 19 H -0.187 1.187 20 C -0.111 4.111 21 C -0.191 4.191 22 C 0.052 3.948 23 O -0.235 6.235 24 C 0.010 3.990 25 C -0.236 4.236 26 C -0.203 4.203 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.135 0.865 30 H 0.163 0.837 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.250 0.750 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.163 0.837 38 H 0.177 0.823 39 H 0.102 0.898 40 H 0.078 0.922 41 H 0.112 0.888 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.118 0.882 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 17.335 -24.894 -10.522 32.108 hybrid contribution 0.033 -0.285 2.174 2.193 sum 17.368 -25.178 -8.348 31.706 Atomic orbital electron populations 1.23310 0.76818 1.05435 1.02040 1.86136 1.22874 1.26027 1.89227 1.18450 0.89651 0.85498 1.03220 1.21101 1.00668 0.90559 1.04745 1.19426 0.94019 0.92994 1.04193 1.20103 0.98888 0.93438 0.82968 1.45850 1.54762 1.26337 1.09337 1.20040 0.77336 0.80424 0.90039 1.90695 1.52027 1.54597 1.46910 1.23377 1.05145 1.02712 0.96883 1.85554 1.68300 1.27562 1.10768 1.23176 1.40430 1.14275 0.91645 0.89945 1.26124 0.94022 0.94430 1.04581 1.70179 1.33752 1.13754 1.37014 0.85013 0.78869 0.77969 0.76206 1.18660 1.20395 1.18712 1.21036 0.92490 0.99021 0.98595 1.21314 1.01584 0.90139 1.06073 1.18524 0.88366 0.86902 1.00963 1.86211 1.20468 1.28826 1.87996 1.22757 0.77154 1.00883 0.98166 1.22384 1.02580 1.02473 0.96113 1.21874 1.01762 0.95662 1.01026 0.92085 0.91883 0.86470 0.83671 0.91215 0.90646 0.74966 0.87314 0.87207 0.91997 0.83714 0.82349 0.89815 0.92206 0.88823 0.92301 0.92168 0.88200 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -7.06 10.28 -79.73 -0.82 -7.88 16 3 C 0.08 1.64 6.70 22.57 0.15 1.79 16 4 C -0.15 -2.87 8.69 22.35 0.19 -2.68 16 5 C -0.11 -1.97 5.25 -19.86 -0.10 -2.08 16 6 C 0.17 3.80 5.80 85.63 0.50 4.30 16 7 N -0.71 -17.95 5.55 -466.80 -2.59 -20.54 16 8 C 0.54 19.53 7.85 87.66 0.69 20.21 16 9 O -0.56 -25.81 15.86 -3.02 -0.05 -25.86 16 10 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 11 S -0.15 -8.25 20.57 -56.49 -1.16 -9.41 16 12 C -0.55 -31.22 9.50 67.95 0.65 -30.58 16 13 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 14 C 0.01 0.75 5.49 84.85 0.47 1.22 16 15 N -0.91 -55.90 13.22 21.65 0.29 -55.61 16 16 Si 1.00 43.50 29.55 68.60 2.03 45.53 16 17 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 18 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 19 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 20 C -0.09 -1.52 9.69 22.27 0.22 -1.30 16 21 C -0.17 -2.73 8.24 22.35 0.18 -2.55 16 22 C 0.10 1.98 6.61 22.57 0.15 2.13 16 23 O -0.32 -6.42 9.59 -79.57 -0.76 -7.18 16 24 C 0.07 0.81 2.85 30.59 0.09 0.89 16 25 C -0.18 -1.81 9.17 71.98 0.66 -1.15 16 26 C -0.15 -1.36 9.56 71.98 0.69 -0.68 16 27 H 0.06 0.76 7.66 -2.39 -0.02 0.75 16 28 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 29 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.15 2.41 6.30 -2.91 -0.02 2.39 16 31 H 0.07 1.67 8.08 -2.39 -0.02 1.65 16 32 H 0.08 1.76 8.08 -2.39 -0.02 1.74 16 33 H 0.41 8.24 8.46 -92.71 -0.78 7.45 16 34 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 35 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 36 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 37 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.16 1.73 5.42 -2.91 -0.02 1.72 16 39 H 0.08 0.82 6.32 -2.38 -0.02 0.81 16 40 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.06 0.67 6.91 -2.38 -0.02 0.65 16 43 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 45 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -78.87 391.52 3.23 -75.64 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.22 Total: 19.09 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 6.07 Total: -13.78 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -2.30 Total: -76.15 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -1.63 Total: -40.92 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.16 Total: -9.41 kcal Total: -78.87 3.23 -75.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915157835.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.654 kcal (2) G-P(sol) polarization free energy of solvation -78.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds