Wall clock time and date at job start Tue Mar 31 2020 22:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52991 * 109.47504 * 2 1 4 4 C 1.50705 * 109.46921 * 240.00001 * 2 1 3 5 5 H 1.08004 * 119.99865 * 237.69445 * 4 2 1 6 6 C 1.37867 * 120.00095 * 57.69719 * 4 2 1 7 7 N 1.31514 * 120.00177 * 6.57764 * 6 4 2 8 8 Si 1.86797 * 120.00076 * 186.58100 * 6 4 2 9 9 H 1.48498 * 109.47345 * 84.99233 * 8 6 4 10 10 H 1.48502 * 109.47315 * 204.99215 * 8 6 4 11 11 H 1.48505 * 109.47376 * 324.99125 * 8 6 4 12 12 C 1.53007 * 109.47100 * 120.00178 * 2 1 3 13 13 S 1.81396 * 109.46987 * 299.99839 * 12 2 1 14 14 O 1.42101 * 110.54301 * 68.37388 * 13 12 2 15 15 O 1.42100 * 110.54410 * 291.62542 * 13 12 2 16 16 N 1.65599 * 104.44897 * 179.97438 * 13 12 2 17 17 C 1.46507 * 119.99575 * 65.00067 * 16 13 12 18 18 C 1.50704 * 109.46781 * 164.99731 * 17 16 13 19 19 C 1.37973 * 119.87855 * 259.72683 * 18 17 16 20 20 C 1.38246 * 120.34668 * 179.82356 * 19 18 17 21 21 C 1.38396 * 119.76886 * 0.39011 * 20 19 18 22 22 C 1.37692 * 119.97418 * 359.68455 * 21 20 19 23 23 C 1.38924 * 120.79343 * 0.30763 * 22 21 20 24 24 O 1.36134 * 111.23520 * 179.28970 * 23 22 21 25 25 C 1.43771 * 109.25832 * 18.85818 * 24 23 22 26 26 C 1.51645 * 132.17510 * 180.54622 * 22 21 20 27 27 H 1.09003 * 109.46962 * 306.66785 * 1 2 3 28 28 H 1.09002 * 109.47324 * 66.66708 * 1 2 3 29 29 H 1.08997 * 109.47363 * 186.67054 * 1 2 3 30 30 H 1.08996 * 109.47527 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47223 * 300.00449 * 3 2 1 32 32 H 1.09005 * 109.47147 * 59.99820 * 3 2 1 33 33 H 0.96999 * 120.00482 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.46924 * 179.97438 * 12 2 1 35 35 H 1.09004 * 109.46850 * 59.99678 * 12 2 1 36 36 H 0.96991 * 120.00536 * 245.27259 * 16 13 12 37 37 H 1.09001 * 109.47284 * 284.99892 * 17 16 13 38 38 H 1.08996 * 109.47277 * 45.00194 * 17 16 13 39 39 H 1.07998 * 119.82938 * 0.07331 * 19 18 17 40 40 H 1.08004 * 120.11427 * 180.12222 * 20 19 18 41 41 H 1.08002 * 120.01025 * 179.71151 * 21 20 19 42 42 H 1.08996 * 110.74437 * 90.65297 * 25 24 23 43 43 H 1.09002 * 110.74469 * 213.81334 * 25 24 23 44 44 H 1.09000 * 110.94394 * 46.12595 * 26 22 21 45 45 H 1.09005 * 110.97247 * 282.45170 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6835 -1.5663 -1.1319 6 6 1.6604 -0.2678 -2.4821 7 7 0.9755 0.8478 -2.6085 8 14 2.1295 -1.2525 -3.9986 9 1 1.1191 -2.3157 -4.2305 10 1 2.1796 -0.3515 -5.1780 11 1 3.4629 -1.8732 -3.7929 12 6 2.0400 -0.7213 1.2493 13 16 1.4353 0.1338 2.7304 14 8 0.0279 -0.0183 2.8544 15 8 2.0479 1.4099 2.8544 16 7 2.0529 -0.7409 3.9936 17 6 3.5014 -0.7983 4.2059 18 6 3.7859 -1.3266 5.5883 19 6 4.1065 -0.4519 6.6059 20 6 4.3657 -0.9257 7.8785 21 6 4.3109 -2.2855 8.1299 22 6 3.9925 -3.1603 7.1153 23 6 3.7298 -2.6964 5.8325 24 8 3.4534 -3.7240 4.9835 25 6 3.0902 -4.8861 5.7480 26 6 3.8452 -4.6692 7.0808 27 1 -0.3633 0.6137 0.8243 28 1 -0.3634 0.4070 -0.9436 29 1 -0.3634 -1.0207 0.1194 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.7142 1.1594 -3.4891 34 1 3.1299 -0.7217 1.2490 35 1 1.6765 -1.7490 1.2492 36 1 1.4560 -1.2185 4.5906 37 1 3.9514 -1.4588 3.4647 38 1 3.9232 0.2017 4.1053 39 1 4.1513 0.6089 6.4083 40 1 4.6144 -0.2374 8.6728 41 1 4.5172 -2.6603 9.1215 42 1 2.0135 -4.9175 5.9149 43 1 3.4293 -5.7958 5.2524 44 1 3.2537 -5.0223 7.9255 45 1 4.8203 -5.1560 7.0599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921893566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:34 Heat of formation + Delta-G solvation = -102.435473 kcal Electronic energy + Delta-G solvation = -27924.032794 eV Core-core repulsion = 24033.141192 eV Total energy + Delta-G solvation = -3890.891601 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.07506 -38.68104 -38.13107 -38.09795 -36.92149 -36.41761 -33.64570 -33.36067 -31.19592 -30.15494 -28.32385 -27.69447 -27.26202 -26.67311 -24.20949 -23.02504 -21.93213 -21.37503 -20.25022 -18.84096 -18.32498 -17.93258 -17.70657 -17.29927 -17.06117 -16.88582 -16.61704 -16.25993 -15.76649 -15.18067 -14.99829 -14.68042 -14.46391 -14.42477 -14.32409 -13.93494 -13.83703 -13.73265 -13.43997 -13.33556 -13.04425 -12.97591 -12.85472 -12.78739 -12.63551 -12.51128 -12.44529 -12.21742 -12.14317 -11.95888 -11.76679 -11.68623 -11.57380 -11.38295 -10.75180 -10.40229 -10.34174 -9.78920 -9.08484 -8.03602 -6.21659 -0.63758 0.27785 0.37445 1.44295 1.45741 1.54037 1.91803 2.35315 2.44295 2.74814 2.84511 3.18115 3.30828 3.51209 3.58032 3.76200 3.97919 4.02027 4.16210 4.17760 4.25858 4.34037 4.44944 4.50066 4.59074 4.61957 4.69684 4.80023 4.85429 4.88656 4.89620 4.92138 4.99035 5.08515 5.11300 5.38156 5.39471 5.44382 5.49556 5.54462 5.64369 5.70913 5.97047 6.03124 6.11753 6.22383 6.34758 6.82483 7.46175 8.96215 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017076 B = 0.003090 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.371643 B = 9060.525070 C = 9924.160870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.069 3.931 3 C -0.160 4.160 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.018 3.982 7 N -0.906 5.906 8 Si 0.954 3.046 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.268 1.268 12 C -0.586 4.586 13 S 2.616 3.384 14 O -0.993 6.993 15 O -0.987 6.987 16 N -1.108 6.108 17 C 0.154 3.846 18 C -0.132 4.132 19 C -0.080 4.080 20 C -0.148 4.148 21 C -0.066 4.066 22 C -0.188 4.188 23 C 0.099 3.901 24 O -0.324 6.324 25 C 0.039 3.961 26 C -0.102 4.102 27 H 0.028 0.972 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.032 0.968 33 H 0.262 0.738 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.418 0.582 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.143 0.857 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.083 0.917 43 H 0.125 0.875 44 H 0.112 0.888 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.061 -10.774 23.056 26.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.067 3.933 3 C -0.217 4.217 4 C -0.558 4.558 5 H 0.080 0.920 6 C -0.181 4.181 7 N -0.545 5.545 8 Si 0.780 3.220 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.719 4.719 13 S 2.714 3.286 14 O -0.983 6.983 15 O -0.977 6.977 16 N -0.868 5.868 17 C 0.029 3.971 18 C -0.134 4.134 19 C -0.099 4.099 20 C -0.166 4.166 21 C -0.084 4.084 22 C -0.189 4.189 23 C 0.053 3.947 24 O -0.238 6.238 25 C -0.035 4.035 26 C -0.139 4.139 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.253 0.747 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.161 0.839 40 H 0.173 0.827 41 H 0.171 0.829 42 H 0.101 0.899 43 H 0.143 0.857 44 H 0.130 0.870 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.561 -9.793 22.648 25.807 hybrid contribution 0.084 -1.018 -1.161 1.546 sum 7.645 -10.811 21.487 25.239 Atomic orbital electron populations 1.22144 0.97765 0.99801 1.01776 1.17929 0.92284 0.92284 0.90793 1.22233 0.99838 0.98225 1.01441 1.21278 1.30097 1.13956 0.90461 0.92018 1.25670 0.95218 0.95643 1.01579 1.69948 1.39327 1.21284 1.23927 0.85630 0.78774 0.78580 0.78992 1.20242 1.21207 1.19282 1.30470 1.12474 1.13290 1.15625 1.04652 0.73461 0.74840 0.75662 1.93508 1.31425 1.87091 1.86274 1.93496 1.78437 1.39810 1.85945 1.55463 1.14644 1.70482 1.46222 1.20234 0.79622 1.02228 0.94986 1.19093 1.08253 0.89656 0.96413 1.21158 0.96519 0.99923 0.92288 1.21393 1.02407 0.95844 0.96958 1.20718 0.96385 0.92355 0.98957 1.21179 1.06528 0.97135 0.94031 1.19650 0.96257 0.88977 0.89833 1.86853 1.83445 1.20197 1.33322 1.24165 1.00670 0.87594 0.91105 1.21844 1.02818 0.90412 0.98820 0.95267 0.91009 0.94042 0.94131 0.90770 0.94914 0.92861 0.84715 0.84774 0.74703 0.90449 0.89108 0.83937 0.82683 0.82943 0.89867 0.85693 0.86957 0.88054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.97 7.58 71.98 0.55 -7.43 16 2 C 0.07 3.42 0.52 -52.93 -0.03 3.39 16 3 C -0.16 -8.08 7.79 71.98 0.56 -7.52 16 4 C -0.52 -27.56 8.01 25.60 0.20 -27.35 16 5 H 0.06 3.16 7.75 -2.91 -0.02 3.14 16 6 C 0.02 0.99 5.09 84.65 0.43 1.42 16 7 N -0.91 -50.75 9.39 21.44 0.20 -50.54 16 8 Si 0.95 42.64 29.54 68.60 2.03 44.67 16 9 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 10 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 12 C -0.59 -23.17 5.01 71.98 0.36 -22.81 16 13 S 2.62 98.97 4.49 -56.49 -0.25 98.72 16 14 O -0.99 -42.78 15.84 -127.65 -2.02 -44.80 16 15 O -0.99 -41.75 15.12 -127.65 -1.93 -43.68 16 16 N -1.11 -32.13 5.88 -190.77 -1.12 -33.25 16 17 C 0.15 3.99 6.22 85.63 0.53 4.53 16 18 C -0.13 -3.03 5.30 -19.68 -0.10 -3.14 16 19 C -0.08 -1.53 9.63 22.21 0.21 -1.32 16 20 C -0.15 -2.18 10.07 22.31 0.22 -1.95 16 21 C -0.07 -0.92 10.03 22.18 0.22 -0.70 16 22 C -0.19 -3.19 6.27 -19.53 -0.12 -3.31 16 23 C 0.10 2.21 6.76 22.68 0.15 2.36 16 24 O -0.32 -7.41 11.05 -95.07 -1.05 -8.46 16 25 C 0.04 0.54 8.01 72.56 0.58 1.12 16 26 C -0.10 -1.13 7.12 30.73 0.22 -0.91 16 27 H 0.03 1.42 5.96 -2.39 -0.01 1.40 16 28 H 0.07 3.95 5.99 -2.39 -0.01 3.93 16 29 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 4.09 6.01 -2.38 -0.01 4.07 16 32 H 0.03 1.58 5.46 -2.38 -0.01 1.56 16 33 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 34 H 0.13 4.77 8.14 -2.39 -0.02 4.75 16 35 H 0.13 4.85 8.14 -2.39 -0.02 4.83 16 36 H 0.42 11.04 8.61 -96.75 -0.83 10.21 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.09 2.28 7.54 -2.39 -0.02 2.26 16 39 H 0.14 2.42 8.02 -2.91 -0.02 2.39 16 40 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -71.38 369.08 0.02 -71.36 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: 0.18 Total: 29.61 kcal Atomic # 6 Polarization: -67.62 SS G_CDS: 4.00 Total: -63.63 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -0.92 Total: -83.80 kcal Atomic # 8 Polarization: -91.93 SS G_CDS: -5.00 Total: -96.94 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: 98.97 SS G_CDS: -0.25 Total: 98.72 kcal Total: -71.38 0.02 -71.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921893566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.074 kcal (2) G-P(sol) polarization free energy of solvation -71.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds