Wall clock time and date at job start Tue Mar 31 2020 23:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47097 * 2 1 4 4 O 1.42893 * 109.47114 * 119.99896 * 2 1 3 5 5 C 1.42902 * 113.99971 * 137.47150 * 4 2 1 6 6 C 1.52999 * 110.45528 * 61.22060 * 5 4 2 7 7 N 1.46501 * 109.47068 * 62.87049 * 6 5 4 8 8 C 1.34777 * 119.99493 * 181.92753 * 7 6 5 9 9 O 1.21758 * 120.00385 * 359.97438 * 8 7 6 10 10 C 1.46238 * 119.99566 * 179.72324 * 8 7 6 11 11 S 1.75672 * 125.22968 * 359.96971 * 10 8 7 12 12 C 1.75477 * 92.09172 * 179.97438 * 11 10 8 13 13 C 1.32765 * 111.36266 * 0.30845 * 12 11 10 14 14 C 1.39551 * 125.23053 * 180.27359 * 10 8 7 15 15 C 1.40539 * 123.71150 * 359.96359 * 14 10 8 16 16 H 1.08005 * 119.99759 * 340.47752 * 15 14 10 17 17 C 1.40300 * 120.00140 * 160.47264 * 15 14 10 18 18 N 1.30646 * 119.99944 * 349.66239 * 17 15 14 19 19 Si 1.86806 * 120.00341 * 169.65514 * 17 15 14 20 20 H 1.48501 * 109.46642 * 60.00230 * 19 17 15 21 21 H 1.48495 * 109.47155 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46877 * 300.00743 * 19 17 15 23 23 C 1.54509 * 110.51302 * 298.61352 * 5 4 2 24 24 C 1.54472 * 104.06516 * 241.21864 * 23 5 4 25 25 O 1.44421 * 104.80509 * 23.97999 * 24 23 5 26 26 C 1.44428 * 105.27601 * 319.48693 * 25 24 23 27 27 H 1.08990 * 109.47398 * 299.99892 * 1 2 3 28 28 H 1.09006 * 109.46771 * 60.00292 * 1 2 3 29 29 H 1.08997 * 109.46779 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47438 * 240.00131 * 2 1 3 31 31 H 1.08996 * 109.47731 * 178.72644 * 3 2 1 32 32 H 1.09008 * 109.47307 * 298.72908 * 3 2 1 33 33 H 1.08999 * 109.47273 * 58.72798 * 3 2 1 34 34 H 1.08994 * 109.47266 * 302.86516 * 6 5 4 35 35 H 1.09008 * 109.47064 * 182.86589 * 6 5 4 36 36 H 0.96994 * 120.00008 * 1.92496 * 7 6 5 37 37 H 1.07995 * 124.31180 * 180.02562 * 12 11 10 38 38 H 1.07996 * 122.78489 * 179.80792 * 13 12 11 39 39 H 0.97003 * 119.99779 * 179.97438 * 18 17 15 40 40 H 1.09005 * 110.51170 * 359.86095 * 23 5 4 41 41 H 1.08996 * 110.51152 * 122.57033 * 23 5 4 42 42 H 1.08997 * 110.37332 * 142.80974 * 24 23 5 43 43 H 1.08998 * 110.37675 * 265.14464 * 24 23 5 44 44 H 1.09007 * 110.37184 * 281.68418 * 26 25 24 45 45 H 1.08996 * 110.37669 * 159.34227 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.1071 -1.5515 0.9224 6 6 4.3046 -0.7692 0.3793 7 7 4.7536 0.1967 1.3852 8 6 5.7778 1.0286 1.1105 9 8 6.3302 0.9771 0.0266 10 6 6.2221 1.9969 2.1122 11 16 5.5221 2.1942 3.7113 12 6 6.6428 3.4832 4.1133 13 6 7.4692 3.7372 3.1058 14 6 7.2635 2.9103 1.9427 15 6 8.0272 3.0131 0.7675 16 1 8.0519 2.1923 0.0660 17 6 8.7576 4.1820 0.5055 18 7 8.5736 5.2459 1.2410 19 14 9.9934 4.2171 -0.8950 20 1 9.2978 3.9341 -2.1761 21 1 10.6281 5.5579 -0.9615 22 1 11.0369 3.1870 -0.6602 23 6 2.6994 -2.6699 -0.0626 24 6 2.8893 -3.9713 0.7477 25 8 2.7848 -3.5643 2.1294 26 6 3.4952 -2.3095 2.2113 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1297 1.4427 0.0228 32 1 1.6954 1.9497 -0.9012 33 1 1.6582 1.9628 0.8783 34 1 4.0119 -0.2400 -0.5275 35 1 5.1165 -1.4598 0.1510 36 1 4.3138 0.2375 2.2487 37 1 6.6553 4.0065 5.0579 38 1 8.2329 4.4994 3.1537 39 1 9.0789 6.0540 1.0601 40 1 1.6574 -2.5547 -0.3612 41 1 3.3509 -2.6655 -0.9364 42 1 2.1058 -4.6884 0.5030 43 1 3.8720 -4.4003 0.5518 44 1 4.5709 -2.4836 2.2398 45 1 3.1771 -1.7500 3.0909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928752737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:48 Heat of formation + Delta-G solvation = -111.699746 kcal Electronic energy + Delta-G solvation = -28226.410504 eV Core-core repulsion = 24335.117174 eV Total energy + Delta-G solvation = -3891.293330 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.46181 -38.18780 -37.53318 -36.03527 -34.02482 -33.07443 -32.58004 -31.21063 -29.34777 -28.75550 -27.23887 -26.59130 -25.01416 -23.12929 -22.03992 -21.63043 -19.97242 -19.89610 -18.77616 -17.79702 -17.32126 -16.17194 -15.88014 -15.65529 -15.37824 -15.17360 -15.08467 -14.60239 -14.31762 -14.00343 -13.74620 -13.63937 -13.36092 -12.84152 -12.53554 -12.45771 -12.25841 -12.16810 -12.08265 -12.05305 -11.77572 -11.68870 -11.50874 -11.43935 -11.25890 -11.07589 -10.95117 -10.79457 -10.49250 -10.46169 -10.14281 -9.87286 -9.64641 -9.58630 -9.23925 -8.45424 -8.28776 -7.50852 -7.14905 -7.06503 -4.54510 2.15971 2.95904 2.97921 3.01358 3.14984 3.42342 3.64441 3.79787 3.82011 3.83537 4.03018 4.39688 4.48964 4.61438 4.73066 4.89428 4.96316 5.04384 5.20617 5.22854 5.27441 5.35419 5.48237 5.51458 5.60760 5.67179 5.72256 5.76190 5.83010 5.90808 5.96268 5.97552 6.05795 6.19545 6.52575 6.61510 6.66543 6.80438 7.18653 7.20903 7.22121 7.31679 7.48428 7.69263 8.34322 8.43343 8.58846 8.77469 9.56648 9.82354 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013892 B = 0.003437 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.006319 B = 8144.650637 C = 8495.300086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.081 3.919 3 C -0.176 4.176 4 O -0.357 6.357 5 C 0.076 3.924 6 C 0.112 3.888 7 N -0.743 5.743 8 C 0.601 3.399 9 O -0.568 6.568 10 C -0.432 4.432 11 S -0.050 6.050 12 C -0.206 4.206 13 C -0.103 4.103 14 C 0.139 3.861 15 C -0.376 4.376 16 H 0.113 0.887 17 C 0.067 3.933 18 N -0.776 5.776 19 Si 0.926 3.074 20 H -0.259 1.259 21 H -0.276 1.276 22 H -0.259 1.259 23 C -0.179 4.179 24 C 0.048 3.952 25 O -0.369 6.369 26 C 0.059 3.941 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.394 0.606 37 H 0.137 0.863 38 H 0.150 0.850 39 H 0.289 0.711 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.081 0.919 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.242 -9.039 -1.763 13.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.024 3.976 3 C -0.234 4.234 4 O -0.276 6.276 5 C 0.036 3.964 6 C -0.013 4.013 7 N -0.397 5.397 8 C 0.399 3.601 9 O -0.452 6.452 10 C -0.551 4.551 11 S 0.204 5.796 12 C -0.340 4.340 13 C -0.136 4.136 14 C 0.128 3.872 15 C -0.406 4.406 16 H 0.131 0.869 17 C -0.155 4.155 18 N -0.401 5.401 19 Si 0.750 3.250 20 H -0.183 1.183 21 H -0.201 1.201 22 H -0.183 1.183 23 C -0.217 4.217 24 C -0.029 4.029 25 O -0.288 6.288 26 C -0.017 4.017 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.228 0.772 37 H 0.154 0.846 38 H 0.168 0.832 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.135 -9.605 -1.382 14.031 hybrid contribution 1.541 1.142 -1.228 2.278 sum -8.594 -8.462 -2.611 12.340 Atomic orbital electron populations 1.21951 0.94302 1.02143 1.02480 1.22069 0.94178 0.93149 0.88225 1.22366 1.03412 0.95552 1.02046 1.88019 1.48044 1.58751 1.32780 1.23158 0.87347 0.89909 0.95995 1.21685 0.94664 0.92064 0.92906 1.45722 1.37367 1.38973 1.17681 1.16836 0.78052 0.79032 0.86195 1.90642 1.57704 1.71859 1.24948 1.22498 1.14329 1.19484 0.98808 1.82767 1.42412 1.39266 1.15107 1.24983 1.02483 1.03929 1.02557 1.21860 1.00027 0.99837 0.91826 1.17937 0.88753 0.88064 0.92473 1.20086 1.16981 1.00094 1.03484 0.86924 1.26417 0.96454 0.94807 0.97802 1.69655 1.33639 1.02017 1.34756 0.86039 0.79846 0.78313 0.80848 1.18271 1.20090 1.18328 1.23576 1.03531 0.95236 0.99394 1.23348 1.01728 0.96112 0.81721 1.89155 1.75671 1.37649 1.26303 1.23427 0.96862 0.83908 0.97546 0.91751 0.91555 0.92455 0.92077 0.90745 0.92194 0.91855 0.91465 0.91502 0.77222 0.84562 0.83249 0.90015 0.89436 0.89508 0.88979 0.91953 0.90146 0.87708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.56 37.16 0.36 -1.21 16 2 C 0.08 1.01 2.12 -26.73 -0.06 0.96 16 3 C -0.18 -2.53 9.29 37.15 0.35 -2.18 16 4 O -0.36 -5.01 9.59 -35.23 -0.34 -5.35 16 5 C 0.08 1.00 0.67 -89.05 -0.06 0.94 16 6 C 0.11 1.75 3.54 -4.04 -0.01 1.74 16 7 N -0.74 -13.99 4.42 -61.75 -0.27 -14.26 16 8 C 0.60 14.33 7.76 -13.05 -0.10 14.23 16 9 O -0.57 -15.09 14.40 5.14 0.07 -15.01 16 10 C -0.43 -10.79 6.51 -35.88 -0.23 -11.03 16 11 S -0.05 -1.08 22.25 -107.50 -2.39 -3.47 16 12 C -0.21 -4.47 11.07 28.86 0.32 -4.15 16 13 C -0.10 -2.50 9.08 -39.12 -0.36 -2.86 16 14 C 0.14 3.67 5.72 -106.21 -0.61 3.06 16 15 C -0.38 -10.02 8.61 -37.94 -0.33 -10.34 16 16 H 0.11 3.15 5.89 -52.48 -0.31 2.84 16 17 C 0.07 1.61 5.40 -17.28 -0.09 1.52 16 18 N -0.78 -18.49 10.62 55.57 0.59 -17.90 16 19 Si 0.93 18.29 29.58 -169.99 -5.03 13.27 16 20 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 21 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 22 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 23 C -0.18 -1.85 5.51 -25.17 -0.14 -1.99 16 24 C 0.05 0.48 7.63 37.93 0.29 0.77 16 25 O -0.37 -4.88 11.65 -35.23 -0.41 -5.29 16 26 C 0.06 0.78 6.24 37.94 0.24 1.01 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.71 6.14 -51.93 -0.32 0.39 16 31 H 0.07 1.30 5.51 -51.93 -0.29 1.01 16 32 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.11 5.99 -51.93 -0.31 0.80 16 35 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 36 H 0.39 7.11 7.11 -40.82 -0.29 6.82 16 37 H 0.14 2.52 8.06 -52.49 -0.42 2.10 16 38 H 0.15 3.60 6.14 -52.49 -0.32 3.28 16 39 H 0.29 6.16 8.29 -40.82 -0.34 5.83 16 40 H 0.09 0.86 7.20 -51.93 -0.37 0.48 16 41 H 0.09 0.80 7.73 -51.93 -0.40 0.40 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 1.03 7.87 -51.93 -0.41 0.62 16 45 H 0.10 1.39 8.09 -51.93 -0.42 0.97 16 LS Contribution 371.69 15.07 5.60 5.60 Total: -1.00 -29.13 371.69 -9.00 -38.12 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -6.38 Total: 13.82 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -0.44 Total: -9.53 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 0.32 Total: -32.16 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.67 Total: -25.65 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.27 kcal Atomic # 16 Polarization: -1.08 SS G_CDS: -2.39 Total: -3.47 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.13 -9.00 -38.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928752737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.575 kcal (2) G-P(sol) polarization free energy of solvation -29.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds