Wall clock time and date at job start Tue Mar 31 2020 23:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47097 * 2 1 4 4 O 1.42893 * 109.47114 * 119.99896 * 2 1 3 5 5 C 1.42902 * 113.99971 * 137.47150 * 4 2 1 6 6 C 1.52999 * 110.45528 * 61.22060 * 5 4 2 7 7 N 1.46501 * 109.47068 * 62.87049 * 6 5 4 8 8 C 1.34777 * 119.99493 * 181.92753 * 7 6 5 9 9 O 1.21758 * 120.00385 * 359.97438 * 8 7 6 10 10 C 1.46238 * 119.99566 * 179.72324 * 8 7 6 11 11 S 1.75672 * 125.22968 * 359.96971 * 10 8 7 12 12 C 1.75477 * 92.09172 * 179.97438 * 11 10 8 13 13 C 1.32765 * 111.36266 * 0.30845 * 12 11 10 14 14 C 1.39551 * 125.23053 * 180.27359 * 10 8 7 15 15 C 1.40539 * 123.71150 * 359.96359 * 14 10 8 16 16 H 1.08005 * 119.99759 * 340.47752 * 15 14 10 17 17 C 1.40300 * 120.00140 * 160.47264 * 15 14 10 18 18 N 1.30646 * 119.99944 * 349.66239 * 17 15 14 19 19 Si 1.86806 * 120.00341 * 169.65514 * 17 15 14 20 20 H 1.48501 * 109.46642 * 60.00230 * 19 17 15 21 21 H 1.48495 * 109.47155 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46877 * 300.00743 * 19 17 15 23 23 C 1.54509 * 110.51302 * 298.61352 * 5 4 2 24 24 C 1.54472 * 104.06516 * 241.21864 * 23 5 4 25 25 O 1.44421 * 104.80509 * 23.97999 * 24 23 5 26 26 C 1.44428 * 105.27601 * 319.48693 * 25 24 23 27 27 H 1.08990 * 109.47398 * 299.99892 * 1 2 3 28 28 H 1.09006 * 109.46771 * 60.00292 * 1 2 3 29 29 H 1.08997 * 109.46779 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47438 * 240.00131 * 2 1 3 31 31 H 1.08996 * 109.47731 * 178.72644 * 3 2 1 32 32 H 1.09008 * 109.47307 * 298.72908 * 3 2 1 33 33 H 1.08999 * 109.47273 * 58.72798 * 3 2 1 34 34 H 1.08994 * 109.47266 * 302.86516 * 6 5 4 35 35 H 1.09008 * 109.47064 * 182.86589 * 6 5 4 36 36 H 0.96994 * 120.00008 * 1.92496 * 7 6 5 37 37 H 1.07995 * 124.31180 * 180.02562 * 12 11 10 38 38 H 1.07996 * 122.78489 * 179.80792 * 13 12 11 39 39 H 0.97003 * 119.99779 * 179.97438 * 18 17 15 40 40 H 1.09005 * 110.51170 * 359.86095 * 23 5 4 41 41 H 1.08996 * 110.51152 * 122.57033 * 23 5 4 42 42 H 1.08997 * 110.37332 * 142.80974 * 24 23 5 43 43 H 1.08998 * 110.37675 * 265.14464 * 24 23 5 44 44 H 1.09007 * 110.37184 * 281.68418 * 26 25 24 45 45 H 1.08996 * 110.37669 * 159.34227 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.1071 -1.5515 0.9224 6 6 4.3046 -0.7692 0.3793 7 7 4.7536 0.1967 1.3852 8 6 5.7778 1.0286 1.1105 9 8 6.3302 0.9771 0.0266 10 6 6.2221 1.9969 2.1122 11 16 5.5221 2.1942 3.7113 12 6 6.6428 3.4832 4.1133 13 6 7.4692 3.7372 3.1058 14 6 7.2635 2.9103 1.9427 15 6 8.0272 3.0131 0.7675 16 1 8.0519 2.1923 0.0660 17 6 8.7576 4.1820 0.5055 18 7 8.5736 5.2459 1.2410 19 14 9.9934 4.2171 -0.8950 20 1 9.2978 3.9341 -2.1761 21 1 10.6281 5.5579 -0.9615 22 1 11.0369 3.1870 -0.6602 23 6 2.6994 -2.6699 -0.0626 24 6 2.8893 -3.9713 0.7477 25 8 2.7848 -3.5643 2.1294 26 6 3.4952 -2.3095 2.2113 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1297 1.4427 0.0228 32 1 1.6954 1.9497 -0.9012 33 1 1.6582 1.9628 0.8783 34 1 4.0119 -0.2400 -0.5275 35 1 5.1165 -1.4598 0.1510 36 1 4.3138 0.2375 2.2487 37 1 6.6553 4.0065 5.0579 38 1 8.2329 4.4994 3.1537 39 1 9.0789 6.0540 1.0601 40 1 1.6574 -2.5547 -0.3612 41 1 3.3509 -2.6655 -0.9364 42 1 2.1058 -4.6884 0.5030 43 1 3.8720 -4.4003 0.5518 44 1 4.5709 -2.4836 2.2398 45 1 3.1771 -1.7500 3.0909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928752737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:47 Heat of formation + Delta-G solvation = -130.237498 kcal Electronic energy + Delta-G solvation = -28227.214362 eV Core-core repulsion = 24335.117174 eV Total energy + Delta-G solvation = -3892.097187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.54964 -39.89409 -38.59532 -37.84438 -35.50755 -34.91185 -33.76042 -32.23994 -30.95704 -30.09955 -28.40360 -28.05174 -26.46670 -24.24524 -23.61701 -22.67582 -21.68188 -21.03641 -20.59525 -19.41884 -18.39549 -17.67593 -17.42693 -16.98700 -16.74885 -16.32812 -16.21448 -16.08409 -15.59872 -15.50918 -15.24845 -15.06052 -14.43394 -14.20538 -13.99581 -13.90730 -13.64941 -13.53068 -13.40341 -13.27977 -13.13309 -13.06218 -12.93639 -12.72702 -12.57892 -12.41904 -12.10006 -12.05655 -12.03295 -11.87751 -11.49435 -11.41511 -11.05398 -10.80782 -10.68925 -10.33893 -9.96019 -9.36272 -8.95130 -8.85987 -6.45539 0.31786 1.33059 1.36166 1.38579 1.45523 1.80933 1.98659 2.16026 2.30487 2.55317 2.67728 2.87576 3.33300 3.43773 3.59076 3.68276 3.95659 4.06203 4.13314 4.22391 4.27668 4.33498 4.36172 4.44683 4.54498 4.66316 4.69519 4.75560 4.80399 4.85278 4.87576 4.92842 4.96893 4.97726 5.00520 5.27358 5.32050 5.34818 5.39811 5.57558 5.65159 5.74081 5.83786 6.23721 6.39994 6.58336 6.71081 6.95804 7.73697 8.05351 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013892 B = 0.003437 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.006319 B = 8144.650637 C = 8495.300086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.079 3.921 3 C -0.174 4.174 4 O -0.370 6.370 5 C 0.081 3.919 6 C 0.113 3.887 7 N -0.727 5.727 8 C 0.595 3.405 9 O -0.604 6.604 10 C -0.468 4.468 11 S 0.001 5.999 12 C -0.193 4.193 13 C -0.132 4.132 14 C 0.110 3.890 15 C -0.415 4.415 16 H 0.088 0.912 17 C 0.036 3.964 18 N -0.791 5.791 19 Si 0.990 3.010 20 H -0.268 1.268 21 H -0.251 1.251 22 H -0.257 1.257 23 C -0.172 4.172 24 C 0.044 3.956 25 O -0.385 6.385 26 C 0.060 3.940 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.398 0.602 37 H 0.174 0.826 38 H 0.147 0.853 39 H 0.301 0.699 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.115 0.885 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.323 -9.670 -1.776 14.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.022 3.978 3 C -0.231 4.231 4 O -0.290 6.290 5 C 0.040 3.960 6 C -0.011 4.011 7 N -0.379 5.379 8 C 0.392 3.608 9 O -0.491 6.491 10 C -0.587 4.587 11 S 0.256 5.744 12 C -0.327 4.327 13 C -0.164 4.164 14 C 0.099 3.901 15 C -0.445 4.445 16 H 0.106 0.894 17 C -0.185 4.185 18 N -0.415 5.415 19 Si 0.810 3.190 20 H -0.193 1.193 21 H -0.174 1.174 22 H -0.181 1.181 23 C -0.211 4.211 24 C -0.032 4.032 25 O -0.304 6.304 26 C -0.017 4.017 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.233 0.767 37 H 0.192 0.808 38 H 0.164 0.836 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.133 0.867 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.263 -10.254 -1.357 15.292 hybrid contribution 1.771 1.309 -1.162 2.490 sum -9.492 -8.945 -2.520 13.284 Atomic orbital electron populations 1.21918 0.92222 1.03076 1.03029 1.22186 0.95696 0.91686 0.88199 1.22339 1.00960 0.97412 1.02400 1.88013 1.47987 1.59125 1.33856 1.23119 0.85976 0.90041 0.96834 1.21852 0.95933 0.91374 0.91976 1.45493 1.35715 1.38282 1.18380 1.16939 0.78766 0.79499 0.85577 1.90605 1.59162 1.73007 1.26288 1.22975 1.14762 1.19751 1.01178 1.82424 1.41211 1.38530 1.12198 1.25459 1.00929 1.03121 1.03194 1.21769 1.01610 1.00908 0.92118 1.18388 0.89284 0.89116 0.93357 1.20085 1.19591 1.00918 1.03922 0.89438 1.27090 0.97524 0.93762 1.00102 1.69636 1.33940 1.02416 1.35524 0.85124 0.77398 0.79433 0.77074 1.19324 1.17386 1.18150 1.23567 1.04432 0.93987 0.99072 1.23585 1.03344 0.96253 0.80050 1.89140 1.75667 1.37352 1.28225 1.23365 0.96836 0.84220 0.97301 0.92434 0.89805 0.91300 0.90994 0.94287 0.90729 0.92718 0.92249 0.91480 0.76698 0.80826 0.83614 0.88718 0.88292 0.88281 0.86677 0.90874 0.90276 0.88312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.56 71.98 0.69 -1.98 16 2 C 0.08 1.88 2.12 30.59 0.06 1.95 16 3 C -0.17 -4.97 9.29 71.98 0.67 -4.30 16 4 O -0.37 -10.00 9.59 -148.98 -1.43 -11.43 16 5 C 0.08 2.02 0.67 -9.78 -0.01 2.02 16 6 C 0.11 3.57 3.54 86.38 0.31 3.87 16 7 N -0.73 -27.98 4.42 -467.47 -2.07 -30.05 16 8 C 0.60 29.50 7.76 86.32 0.67 30.17 16 9 O -0.60 -33.79 14.40 -4.53 -0.07 -33.86 16 10 C -0.47 -24.05 6.51 24.67 0.16 -23.89 16 11 S 0.00 0.03 22.25 -56.49 -1.26 -1.22 16 12 C -0.19 -8.18 11.07 66.64 0.74 -7.44 16 13 C -0.13 -6.46 9.08 22.60 0.21 -6.26 16 14 C 0.11 6.02 5.72 -20.89 -0.12 5.90 16 15 C -0.41 -23.16 8.61 23.33 0.20 -22.96 16 16 H 0.09 5.21 5.89 -2.91 -0.02 5.20 16 17 C 0.04 1.75 5.40 85.37 0.46 2.21 16 18 N -0.79 -38.06 10.62 21.89 0.23 -37.83 16 19 Si 0.99 37.98 29.58 68.60 2.03 40.01 16 20 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 21 H -0.25 -8.50 7.11 99.48 0.71 -7.79 16 22 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 23 C -0.17 -3.18 5.51 31.61 0.17 -3.00 16 24 C 0.04 0.77 7.63 72.48 0.55 1.32 16 25 O -0.38 -9.52 11.65 -148.98 -1.74 -11.25 16 26 C 0.06 1.51 6.24 72.49 0.45 1.97 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 1.55 6.14 -2.38 -0.01 1.53 16 31 H 0.04 1.39 5.51 -2.39 -0.01 1.37 16 32 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 34 H 0.06 1.99 5.99 -2.39 -0.01 1.98 16 35 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 36 H 0.40 14.54 7.11 -92.71 -0.66 13.88 16 37 H 0.17 5.93 8.06 -2.91 -0.02 5.90 16 38 H 0.15 7.15 6.14 -2.91 -0.02 7.13 16 39 H 0.30 12.74 8.29 -92.71 -0.77 11.98 16 40 H 0.10 1.63 7.20 -2.38 -0.02 1.61 16 41 H 0.10 1.60 7.73 -2.39 -0.02 1.58 16 42 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.08 1.99 7.87 -2.38 -0.02 1.98 16 45 H 0.10 2.58 8.09 -2.39 -0.02 2.56 16 Total: -1.00 -65.77 371.69 1.29 -64.49 By element: Atomic # 1 Polarization: 41.21 SS G_CDS: 0.36 Total: 41.58 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: 5.22 Total: -20.44 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: -1.83 Total: -67.87 kcal Atomic # 8 Polarization: -53.31 SS G_CDS: -3.23 Total: -56.54 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.01 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -1.26 Total: -1.22 kcal Total: -65.77 1.29 -64.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928752737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.752 kcal (2) G-P(sol) polarization free energy of solvation -65.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds