Wall clock time and date at job start Tue Mar 31 2020 23:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46856 * 2 1 4 4 O 1.42902 * 109.46853 * 119.99514 * 2 1 3 5 5 C 1.42900 * 114.00130 * 131.38656 * 4 2 1 6 6 C 1.52999 * 110.45392 * 293.68941 * 5 4 2 7 7 N 1.46496 * 109.47038 * 295.95558 * 6 5 4 8 8 C 1.34786 * 119.99955 * 175.30271 * 7 6 5 9 9 O 1.21755 * 119.99526 * 359.97438 * 8 7 6 10 10 C 1.46235 * 119.99759 * 180.27284 * 8 7 6 11 11 S 1.75659 * 125.22979 * 359.74962 * 10 8 7 12 12 C 1.75478 * 92.09278 * 179.97438 * 11 10 8 13 13 C 1.32765 * 111.36031 * 0.02562 * 12 11 10 14 14 C 1.39550 * 125.22617 * 179.44192 * 10 8 7 15 15 C 1.40547 * 123.71277 * 359.97438 * 14 10 8 16 16 H 1.07999 * 120.00011 * 331.02949 * 15 14 10 17 17 C 1.40301 * 119.99695 * 151.03080 * 15 14 10 18 18 N 1.30642 * 119.99857 * 166.25367 * 17 15 14 19 19 Si 1.86794 * 120.00302 * 346.25816 * 17 15 14 20 20 H 1.48499 * 109.47441 * 88.55820 * 19 17 15 21 21 H 1.48506 * 109.47464 * 208.56029 * 19 17 15 22 22 H 1.48497 * 109.47241 * 328.55807 * 19 17 15 23 23 C 1.54507 * 110.50882 * 56.29057 * 5 4 2 24 24 C 1.54489 * 104.06185 * 118.78633 * 23 5 4 25 25 O 1.44425 * 104.79716 * 23.97678 * 24 23 5 26 26 C 1.44414 * 105.27934 * 319.48850 * 25 24 23 27 27 H 1.08997 * 109.47017 * 300.00183 * 1 2 3 28 28 H 1.08999 * 109.46499 * 60.00757 * 1 2 3 29 29 H 1.08995 * 109.46762 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47733 * 239.99776 * 2 1 3 31 31 H 1.09001 * 109.47381 * 308.59237 * 3 2 1 32 32 H 1.08995 * 109.47516 * 68.59633 * 3 2 1 33 33 H 1.09000 * 109.47223 * 188.59770 * 3 2 1 34 34 H 1.08999 * 109.47161 * 175.95282 * 6 5 4 35 35 H 1.09003 * 109.47283 * 55.95439 * 6 5 4 36 36 H 0.96993 * 120.00398 * 355.29755 * 7 6 5 37 37 H 1.07999 * 124.32020 * 179.97438 * 12 11 10 38 38 H 1.08002 * 122.78418 * 180.02562 * 13 12 11 39 39 H 0.96997 * 120.00245 * 180.02562 * 18 17 15 40 40 H 1.09001 * 110.51592 * 237.42695 * 23 5 4 41 41 H 1.08992 * 110.51709 * 0.14033 * 23 5 4 42 42 H 1.08999 * 110.37419 * 142.80658 * 24 23 5 43 43 H 1.08992 * 110.36790 * 265.03506 * 24 23 5 44 44 H 1.09003 * 110.37342 * 281.68503 * 26 25 24 45 45 H 1.09002 * 110.37563 * 159.34649 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.0138 -1.6520 0.9027 6 6 2.4328 -2.8122 0.0921 7 7 1.4119 -3.4999 0.8864 8 6 0.6934 -4.5006 0.3395 9 8 0.8926 -4.8326 -0.8148 10 6 -0.3298 -5.1830 1.1306 11 16 -0.7310 -4.8165 2.8010 12 6 -1.9655 -6.0628 2.8454 13 6 -2.0545 -6.6969 1.6823 14 6 -1.1418 -6.2214 0.6725 15 6 -1.0750 -6.7480 -0.6289 16 1 -0.7592 -6.1209 -1.4495 17 6 -1.4184 -8.0882 -0.8618 18 7 -1.6179 -8.5087 -2.0825 19 14 -1.5906 -9.2713 0.5733 20 1 -2.9843 -9.2302 1.0844 21 1 -1.2699 -10.6488 0.1206 22 1 -0.6545 -8.8757 1.6561 23 6 4.2061 -1.0133 0.1559 24 6 5.4019 -1.2194 1.1121 25 8 5.0317 -2.3532 1.9265 26 6 3.6302 -2.1684 2.2217 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8935 -0.5138 -0.8899 31 1 1.5567 1.9988 -0.8032 32 1 1.8075 1.9101 0.9567 33 1 3.1191 1.4464 -0.1536 34 1 3.2286 -3.5126 -0.1616 35 1 1.9827 -2.4268 -0.8228 36 1 1.2530 -3.2352 1.8059 37 1 -2.5745 -6.2862 3.7088 38 1 -2.7561 -7.4988 1.5056 39 1 -1.8558 -9.4351 -2.2436 40 1 4.3817 -1.5241 -0.7909 41 1 4.0282 0.0492 -0.0097 42 1 6.3071 -1.4383 0.5458 43 1 5.5479 -0.3355 1.7329 44 1 3.5033 -1.4308 3.0141 45 1 3.1744 -3.1163 2.5079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928752743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:52 Heat of formation + Delta-G solvation = -103.253163 kcal Electronic energy + Delta-G solvation = -28178.852616 eV Core-core repulsion = 24287.925557 eV Total energy + Delta-G solvation = -3890.927059 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.51672 -38.19807 -37.66926 -36.21879 -34.07974 -33.31728 -32.58462 -31.25023 -29.46959 -28.88946 -27.35520 -26.93020 -25.34584 -23.00960 -21.94746 -21.60847 -20.39327 -19.92352 -18.93399 -18.01252 -17.46618 -16.29487 -15.92973 -15.69407 -15.41358 -15.31197 -14.81361 -14.64500 -14.46625 -14.20034 -13.92037 -13.65324 -13.38592 -13.25279 -12.86070 -12.66095 -12.54498 -12.31293 -12.26375 -12.13984 -11.83565 -11.72403 -11.51255 -11.45120 -11.40261 -11.13151 -11.02449 -10.83943 -10.46253 -10.44823 -10.04382 -9.91202 -9.68975 -9.60539 -9.40904 -8.54401 -8.28384 -7.66191 -7.36278 -7.13788 -4.55673 1.86411 2.81985 2.88008 3.06213 3.09788 3.33066 3.45436 3.50350 3.78675 3.80125 4.04564 4.37907 4.40476 4.59982 4.65141 4.82881 4.91132 4.93981 5.07288 5.10567 5.13222 5.34195 5.41823 5.49821 5.56412 5.64352 5.70244 5.72858 5.74057 5.75686 5.86346 5.90155 5.97544 6.10379 6.17854 6.29313 6.53007 6.62724 6.81490 6.88445 7.11012 7.16662 7.30426 7.64144 8.26027 8.38384 8.49552 8.75837 9.53882 9.84181 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015227 B = 0.003387 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.362544 B = 8265.420677 C = 8338.393257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.080 3.920 3 C -0.168 4.168 4 O -0.359 6.359 5 C 0.076 3.924 6 C 0.116 3.884 7 N -0.744 5.744 8 C 0.599 3.401 9 O -0.555 6.555 10 C -0.421 4.421 11 S -0.017 6.017 12 C -0.177 4.177 13 C -0.169 4.169 14 C 0.109 3.891 15 C -0.362 4.362 16 H 0.119 0.881 17 C 0.077 3.923 18 N -0.775 5.775 19 Si 0.911 3.089 20 H -0.264 1.264 21 H -0.283 1.283 22 H -0.242 1.242 23 C -0.187 4.187 24 C 0.048 3.952 25 O -0.365 6.365 26 C 0.058 3.942 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.391 0.609 37 H 0.144 0.856 38 H 0.129 0.871 39 H 0.292 0.708 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.705 13.523 5.992 16.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.022 3.978 3 C -0.225 4.225 4 O -0.279 6.279 5 C 0.035 3.965 6 C -0.008 4.008 7 N -0.399 5.399 8 C 0.395 3.605 9 O -0.437 6.437 10 C -0.540 4.540 11 S 0.241 5.759 12 C -0.312 4.312 13 C -0.202 4.202 14 C 0.098 3.902 15 C -0.393 4.393 16 H 0.137 0.863 17 C -0.146 4.146 18 N -0.398 5.398 19 Si 0.736 3.264 20 H -0.190 1.190 21 H -0.209 1.209 22 H -0.166 1.166 23 C -0.225 4.225 24 C -0.029 4.029 25 O -0.283 6.283 26 C -0.019 4.019 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.225 0.775 37 H 0.162 0.838 38 H 0.146 0.854 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.414 14.017 6.213 17.031 hybrid contribution -0.927 -1.311 -0.404 1.656 sum 6.487 12.706 5.809 15.404 Atomic orbital electron populations 1.21989 0.93937 1.03489 1.02035 1.22082 0.94930 0.92178 0.88574 1.22340 1.00969 0.96478 1.02727 1.87973 1.55567 1.52552 1.31769 1.23152 0.88213 0.88780 0.96318 1.21592 0.92070 0.92860 0.94328 1.45724 1.40210 1.38030 1.15897 1.16778 0.79657 0.78159 0.85888 1.90718 1.69350 1.65951 1.17661 1.22516 1.15473 1.20003 0.96005 1.82844 1.38842 1.40116 1.14139 1.24953 1.03261 1.02050 1.00894 1.21590 1.01895 1.02470 0.94259 1.17905 0.88938 0.91218 0.92127 1.19722 1.30300 0.95392 0.93855 0.86293 1.26489 0.91005 0.99919 0.97215 1.69571 1.29043 1.18731 1.22435 0.86434 0.80123 0.77950 0.81866 1.19017 1.20941 1.16561 1.23749 0.95298 1.03000 1.00442 1.23346 0.97629 0.89714 0.92210 1.89201 1.23990 1.44221 1.70925 1.23357 0.81348 1.02459 0.94702 0.91960 0.91667 0.91360 0.91572 0.91585 0.91695 0.92446 0.91139 0.91588 0.77457 0.83826 0.85412 0.89749 0.89574 0.88768 0.88856 0.92036 0.90802 0.87632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.55 37.16 0.35 -1.55 16 2 C 0.08 0.92 2.38 -26.73 -0.06 0.85 16 3 C -0.17 -1.49 9.33 37.16 0.35 -1.14 16 4 O -0.36 -4.67 9.62 -35.23 -0.34 -5.01 16 5 C 0.08 0.97 0.69 -89.06 -0.06 0.91 16 6 C 0.12 1.90 4.37 -4.04 -0.02 1.88 16 7 N -0.74 -14.16 5.00 -61.75 -0.31 -14.47 16 8 C 0.60 14.45 7.76 -13.04 -0.10 14.35 16 9 O -0.55 -15.33 14.54 5.14 0.07 -15.25 16 10 C -0.42 -10.27 6.51 -35.88 -0.23 -10.50 16 11 S -0.02 -0.33 22.25 -107.50 -2.39 -2.72 16 12 C -0.18 -3.51 11.07 28.86 0.32 -3.19 16 13 C -0.17 -3.79 7.59 -39.12 -0.30 -4.09 16 14 C 0.11 2.80 5.21 -106.21 -0.55 2.25 16 15 C -0.36 -10.04 8.91 -37.94 -0.34 -10.38 16 16 H 0.12 3.69 6.47 -52.49 -0.34 3.35 16 17 C 0.08 1.98 5.50 -17.28 -0.10 1.89 16 18 N -0.78 -20.09 13.92 55.57 0.77 -19.32 16 19 Si 0.91 19.59 24.57 -169.99 -4.18 15.41 16 20 H -0.26 -5.27 6.43 56.52 0.36 -4.90 16 21 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.24 -5.40 6.89 56.52 0.39 -5.01 16 23 C -0.19 -1.91 5.71 -25.16 -0.14 -2.05 16 24 C 0.05 0.47 7.63 37.94 0.29 0.76 16 25 O -0.36 -4.86 11.65 -35.23 -0.41 -5.27 16 26 C 0.06 0.75 6.64 37.93 0.25 1.00 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 0.78 5.90 -51.93 -0.31 0.48 16 31 H 0.07 0.51 8.13 -51.93 -0.42 0.08 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.45 5.89 -51.93 -0.31 0.15 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 1.12 6.64 -51.93 -0.34 0.78 16 36 H 0.39 6.90 6.57 -40.82 -0.27 6.63 16 37 H 0.14 2.31 8.06 -52.49 -0.42 1.88 16 38 H 0.13 2.72 4.62 -52.49 -0.24 2.48 16 39 H 0.29 6.70 8.29 -40.82 -0.34 6.36 16 40 H 0.09 0.86 7.73 -51.93 -0.40 0.46 16 41 H 0.09 0.83 4.79 -51.93 -0.25 0.58 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 45 H 0.11 1.47 6.71 -51.93 -0.35 1.12 16 LS Contribution 365.69 15.07 5.51 5.51 Total: -1.00 -30.31 365.69 -7.82 -38.13 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -6.21 Total: 12.01 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -0.34 Total: -9.01 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.46 Total: -33.79 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.67 Total: -25.53 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.18 Total: 15.41 kcal Atomic # 16 Polarization: -0.33 SS G_CDS: -2.39 Total: -2.72 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.31 -7.82 -38.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928752743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.123 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds