Wall clock time and date at job start Tue Mar 31 2020 23:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46856 * 2 1 4 4 O 1.42902 * 109.46853 * 119.99514 * 2 1 3 5 5 C 1.42900 * 114.00130 * 131.38656 * 4 2 1 6 6 C 1.52999 * 110.45392 * 293.68941 * 5 4 2 7 7 N 1.46496 * 109.47038 * 295.95558 * 6 5 4 8 8 C 1.34786 * 119.99955 * 175.30271 * 7 6 5 9 9 O 1.21755 * 119.99526 * 359.97438 * 8 7 6 10 10 C 1.46235 * 119.99759 * 180.27284 * 8 7 6 11 11 S 1.75659 * 125.22979 * 359.74962 * 10 8 7 12 12 C 1.75478 * 92.09278 * 179.97438 * 11 10 8 13 13 C 1.32765 * 111.36031 * 0.02562 * 12 11 10 14 14 C 1.39550 * 125.22617 * 179.44192 * 10 8 7 15 15 C 1.40547 * 123.71277 * 359.97438 * 14 10 8 16 16 H 1.07999 * 120.00011 * 331.02949 * 15 14 10 17 17 C 1.40301 * 119.99695 * 151.03080 * 15 14 10 18 18 N 1.30642 * 119.99857 * 166.25367 * 17 15 14 19 19 Si 1.86794 * 120.00302 * 346.25816 * 17 15 14 20 20 H 1.48499 * 109.47441 * 88.55820 * 19 17 15 21 21 H 1.48506 * 109.47464 * 208.56029 * 19 17 15 22 22 H 1.48497 * 109.47241 * 328.55807 * 19 17 15 23 23 C 1.54507 * 110.50882 * 56.29057 * 5 4 2 24 24 C 1.54489 * 104.06185 * 118.78633 * 23 5 4 25 25 O 1.44425 * 104.79716 * 23.97678 * 24 23 5 26 26 C 1.44414 * 105.27934 * 319.48850 * 25 24 23 27 27 H 1.08997 * 109.47017 * 300.00183 * 1 2 3 28 28 H 1.08999 * 109.46499 * 60.00757 * 1 2 3 29 29 H 1.08995 * 109.46762 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47733 * 239.99776 * 2 1 3 31 31 H 1.09001 * 109.47381 * 308.59237 * 3 2 1 32 32 H 1.08995 * 109.47516 * 68.59633 * 3 2 1 33 33 H 1.09000 * 109.47223 * 188.59770 * 3 2 1 34 34 H 1.08999 * 109.47161 * 175.95282 * 6 5 4 35 35 H 1.09003 * 109.47283 * 55.95439 * 6 5 4 36 36 H 0.96993 * 120.00398 * 355.29755 * 7 6 5 37 37 H 1.07999 * 124.32020 * 179.97438 * 12 11 10 38 38 H 1.08002 * 122.78418 * 180.02562 * 13 12 11 39 39 H 0.96997 * 120.00245 * 180.02562 * 18 17 15 40 40 H 1.09001 * 110.51592 * 237.42695 * 23 5 4 41 41 H 1.08992 * 110.51709 * 0.14033 * 23 5 4 42 42 H 1.08999 * 110.37419 * 142.80658 * 24 23 5 43 43 H 1.08992 * 110.36790 * 265.03506 * 24 23 5 44 44 H 1.09003 * 110.37342 * 281.68503 * 26 25 24 45 45 H 1.09002 * 110.37563 * 159.34649 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.0138 -1.6520 0.9027 6 6 2.4328 -2.8122 0.0921 7 7 1.4119 -3.4999 0.8864 8 6 0.6934 -4.5006 0.3395 9 8 0.8926 -4.8326 -0.8148 10 6 -0.3298 -5.1830 1.1306 11 16 -0.7310 -4.8165 2.8010 12 6 -1.9655 -6.0628 2.8454 13 6 -2.0545 -6.6969 1.6823 14 6 -1.1418 -6.2214 0.6725 15 6 -1.0750 -6.7480 -0.6289 16 1 -0.7592 -6.1209 -1.4495 17 6 -1.4184 -8.0882 -0.8618 18 7 -1.6179 -8.5087 -2.0825 19 14 -1.5906 -9.2713 0.5733 20 1 -2.9843 -9.2302 1.0844 21 1 -1.2699 -10.6488 0.1206 22 1 -0.6545 -8.8757 1.6561 23 6 4.2061 -1.0133 0.1559 24 6 5.4019 -1.2194 1.1121 25 8 5.0317 -2.3532 1.9265 26 6 3.6302 -2.1684 2.2217 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8935 -0.5138 -0.8899 31 1 1.5567 1.9988 -0.8032 32 1 1.8075 1.9101 0.9567 33 1 3.1191 1.4464 -0.1536 34 1 3.2286 -3.5126 -0.1616 35 1 1.9827 -2.4268 -0.8228 36 1 1.2530 -3.2352 1.8059 37 1 -2.5745 -6.2862 3.7088 38 1 -2.7561 -7.4988 1.5056 39 1 -1.8558 -9.4351 -2.2436 40 1 4.3817 -1.5241 -0.7909 41 1 4.0282 0.0492 -0.0097 42 1 6.3071 -1.4383 0.5458 43 1 5.5479 -0.3355 1.7329 44 1 3.5033 -1.4308 3.0141 45 1 3.1744 -3.1163 2.5079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928752743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:51 Heat of formation + Delta-G solvation = -125.406594 kcal Electronic energy + Delta-G solvation = -28179.813261 eV Core-core repulsion = 24287.925557 eV Total energy + Delta-G solvation = -3891.887704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.59894 -40.00139 -38.66244 -38.00700 -35.61822 -35.19851 -33.74349 -32.24109 -31.14255 -30.19138 -28.64189 -28.13348 -26.81206 -24.15361 -23.50761 -22.62153 -22.01796 -21.12344 -20.75743 -19.64256 -18.51404 -17.82564 -17.37832 -17.25893 -16.72399 -16.34886 -16.23369 -15.99470 -15.79878 -15.43564 -15.36095 -15.16122 -14.97906 -14.51601 -14.17973 -14.01002 -13.80332 -13.63362 -13.44387 -13.43229 -13.20061 -13.09289 -13.03680 -12.67872 -12.66381 -12.37455 -12.28424 -12.02828 -11.96322 -11.83298 -11.41071 -11.38400 -11.17367 -10.86004 -10.70530 -10.48168 -10.04472 -9.46437 -9.10831 -9.02562 -6.53471 0.08443 1.15459 1.18460 1.33559 1.42415 1.59171 1.69923 2.05898 2.23179 2.46049 2.57185 2.91952 3.14850 3.35148 3.51387 3.66079 3.92953 4.05484 4.10702 4.14750 4.21113 4.23021 4.38232 4.39467 4.50434 4.55112 4.60781 4.72240 4.73750 4.77949 4.85486 4.87277 4.87736 4.94109 4.99621 5.03836 5.17541 5.24667 5.31744 5.35621 5.57644 5.64013 5.78019 6.19093 6.21497 6.47206 6.58361 6.86106 7.65012 8.02937 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015227 B = 0.003387 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.362544 B = 8265.420677 C = 8338.393257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.073 3.927 3 C -0.160 4.160 4 O -0.366 6.366 5 C 0.083 3.917 6 C 0.116 3.884 7 N -0.725 5.725 8 C 0.589 3.411 9 O -0.601 6.601 10 C -0.453 4.453 11 S 0.051 5.949 12 C -0.152 4.152 13 C -0.201 4.201 14 C 0.098 3.902 15 C -0.412 4.412 16 H 0.061 0.939 17 C 0.039 3.961 18 N -0.820 5.820 19 Si 0.972 3.028 20 H -0.230 1.230 21 H -0.270 1.270 22 H -0.253 1.253 23 C -0.181 4.181 24 C 0.045 3.955 25 O -0.387 6.387 26 C 0.060 3.940 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.030 0.970 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.401 0.599 37 H 0.196 0.804 38 H 0.142 0.858 39 H 0.303 0.697 40 H 0.084 0.916 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.839 14.978 9.512 19.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.016 3.984 3 C -0.217 4.217 4 O -0.286 6.286 5 C 0.042 3.958 6 C -0.009 4.009 7 N -0.378 5.378 8 C 0.385 3.615 9 O -0.487 6.487 10 C -0.572 4.572 11 S 0.309 5.691 12 C -0.287 4.287 13 C -0.234 4.234 14 C 0.087 3.913 15 C -0.443 4.443 16 H 0.080 0.920 17 C -0.180 4.180 18 N -0.445 5.445 19 Si 0.793 3.207 20 H -0.154 1.154 21 H -0.196 1.196 22 H -0.176 1.176 23 C -0.219 4.219 24 C -0.031 4.031 25 O -0.306 6.306 26 C -0.017 4.017 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.236 0.764 37 H 0.213 0.787 38 H 0.159 0.841 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.101 0.899 44 H 0.110 0.890 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.558 15.530 9.752 19.834 hybrid contribution -0.876 -1.524 -1.448 2.277 sum 6.683 14.006 8.304 17.601 Atomic orbital electron populations 1.21988 0.94730 1.01302 1.03264 1.22242 0.94414 0.93902 0.87818 1.22268 1.01850 0.94098 1.03455 1.87960 1.55823 1.52319 1.32479 1.23031 0.88844 0.87531 0.96355 1.21742 0.90801 0.93837 0.94507 1.45512 1.39532 1.36508 1.16295 1.17105 0.80129 0.78878 0.85431 1.90697 1.70691 1.67528 1.19754 1.23082 1.15143 1.19639 0.99344 1.82516 1.37946 1.39374 1.09288 1.25593 1.02084 0.99667 1.01380 1.21527 1.02747 1.04713 0.94437 1.18244 0.89296 0.91433 0.92335 1.19496 1.34343 0.96665 0.93765 0.92041 1.27312 0.89980 1.00583 1.00077 1.69601 1.30715 1.19875 1.24304 0.85514 0.81553 0.75759 0.77894 1.15409 1.19608 1.17649 1.23745 0.94066 1.03878 1.00182 1.23590 0.97805 0.89543 0.92147 1.89179 1.23846 1.45953 1.71597 1.23312 0.81409 1.02088 0.94911 0.91205 0.90025 0.95120 0.92356 0.90194 0.91433 0.91083 0.92449 0.92781 0.76362 0.78660 0.84086 0.88609 0.89719 0.86763 0.87168 0.89889 0.89021 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 9.55 71.98 0.69 -3.04 16 2 C 0.07 1.61 2.38 30.60 0.07 1.68 16 3 C -0.16 -2.39 9.33 71.98 0.67 -1.72 16 4 O -0.37 -9.06 9.62 -148.98 -1.43 -10.49 16 5 C 0.08 2.07 0.69 -9.78 -0.01 2.06 16 6 C 0.12 3.93 4.37 86.38 0.38 4.31 16 7 N -0.73 -28.60 5.00 -467.48 -2.34 -30.93 16 8 C 0.59 29.98 7.76 86.32 0.67 30.65 16 9 O -0.60 -36.11 14.54 -4.53 -0.07 -36.18 16 10 C -0.45 -22.60 6.51 24.67 0.16 -22.44 16 11 S 0.05 1.90 22.25 -56.49 -1.26 0.64 16 12 C -0.15 -5.44 11.07 66.64 0.74 -4.70 16 13 C -0.20 -8.70 7.59 22.60 0.17 -8.53 16 14 C 0.10 5.20 5.21 -20.89 -0.11 5.09 16 15 C -0.41 -24.53 8.91 23.34 0.21 -24.32 16 16 H 0.06 4.25 6.47 -2.91 -0.02 4.23 16 17 C 0.04 2.12 5.50 85.37 0.47 2.59 16 18 N -0.82 -45.06 13.92 21.89 0.30 -44.76 16 19 Si 0.97 40.26 24.57 68.60 1.69 41.94 16 20 H -0.23 -8.21 6.43 99.48 0.64 -7.57 16 21 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 22 H -0.25 -10.78 6.89 99.48 0.69 -10.10 16 23 C -0.18 -3.38 5.71 31.61 0.18 -3.20 16 24 C 0.05 0.78 7.63 72.49 0.55 1.33 16 25 O -0.39 -9.73 11.65 -148.98 -1.74 -11.47 16 26 C 0.06 1.47 6.64 72.48 0.48 1.95 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 1.37 5.90 -2.39 -0.01 1.35 16 31 H 0.08 0.99 8.13 -2.39 -0.02 0.98 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 0.88 5.89 -2.39 -0.01 0.86 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.05 1.97 6.64 -2.39 -0.02 1.95 16 36 H 0.40 14.16 6.57 -92.71 -0.61 13.55 16 37 H 0.20 4.97 8.06 -2.91 -0.02 4.94 16 38 H 0.14 5.65 4.62 -2.91 -0.01 5.63 16 39 H 0.30 14.53 8.29 -92.71 -0.77 13.76 16 40 H 0.08 1.62 7.73 -2.39 -0.02 1.60 16 41 H 0.11 1.68 4.79 -2.39 -0.01 1.67 16 42 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.09 1.93 8.09 -2.39 -0.02 1.91 16 45 H 0.09 2.44 6.71 -2.39 -0.02 2.42 16 Total: -1.00 -73.16 365.69 0.82 -72.34 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: 0.33 Total: 37.18 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: 5.33 Total: -18.28 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -2.03 Total: -75.69 kcal Atomic # 8 Polarization: -54.90 SS G_CDS: -3.23 Total: -58.13 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 1.69 Total: 41.94 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -1.26 Total: 0.64 kcal Total: -73.16 0.82 -72.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928752743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.063 kcal (2) G-P(sol) polarization free energy of solvation -73.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds