Wall clock time and date at job start Tue Mar 31 2020 23:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.33174 * 2 1 4 4 C 1.55036 * 109.33387 * 240.49558 * 2 1 3 5 5 S 1.79474 * 109.76323 * 167.21511 * 4 2 1 6 6 O 1.42100 * 108.00293 * 203.72897 * 5 4 2 7 7 O 1.42095 * 108.00715 * 333.28026 * 5 4 2 8 8 C 1.82323 * 105.44242 * 88.46291 * 5 4 2 9 9 C 1.54466 * 110.35228 * 319.41347 * 8 5 4 10 10 C 1.51878 * 108.88421 * 321.05062 * 9 8 5 11 11 N 1.39176 * 109.33629 * 119.66751 * 2 1 3 12 12 C 1.46899 * 110.99967 * 313.41903 * 11 2 1 13 13 C 1.50699 * 109.46980 * 164.68578 * 12 11 2 14 14 C 1.38296 * 119.93623 * 89.99511 * 13 12 11 15 15 C 1.38102 * 120.07157 * 179.97438 * 14 13 12 16 16 C 1.38876 * 119.92893 * 0.02980 * 15 14 13 17 17 O 1.35753 * 120.06572 * 180.02562 * 16 15 14 18 18 C 1.34825 * 117.00214 * 6.54809 * 17 16 15 19 19 H 1.08004 * 120.00090 * 354.68682 * 18 17 16 20 20 C 1.38658 * 120.00336 * 174.68080 * 18 17 16 21 21 N 1.31562 * 119.99564 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00453 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47402 * 180.02562 * 22 20 18 24 24 H 1.48500 * 109.47143 * 300.00601 * 22 20 18 25 25 H 1.48505 * 109.46752 * 60.00172 * 22 20 18 26 26 C 1.38873 * 119.86576 * 0.26865 * 16 15 14 27 27 C 1.38102 * 119.92774 * 359.45138 * 26 16 15 28 28 H 1.08996 * 109.47314 * 311.12865 * 1 2 3 29 29 H 1.08999 * 109.47264 * 71.13573 * 1 2 3 30 30 H 1.09005 * 109.46887 * 191.13248 * 1 2 3 31 31 H 1.08996 * 109.42531 * 287.30331 * 4 2 1 32 32 H 1.08999 * 109.42301 * 47.19254 * 4 2 1 33 33 H 1.08997 * 109.32260 * 79.68480 * 8 5 4 34 34 H 1.08996 * 109.32142 * 199.14649 * 8 5 4 35 35 H 1.09009 * 109.56754 * 80.86936 * 9 8 5 36 36 H 1.09000 * 109.57083 * 201.10852 * 9 8 5 37 37 H 1.09001 * 110.43248 * 347.43760 * 10 9 8 38 38 H 1.08994 * 110.43577 * 224.88341 * 10 9 8 39 39 H 1.08994 * 109.47166 * 44.68338 * 12 11 2 40 40 H 1.08998 * 109.47037 * 284.67933 * 12 11 2 41 41 H 1.08003 * 119.96568 * 0.02562 * 14 13 12 42 42 H 1.08009 * 120.03247 * 180.02562 * 15 14 13 43 43 H 0.96999 * 119.99598 * 179.97438 * 21 20 18 44 44 H 1.07996 * 120.03964 * 179.72467 * 26 16 15 45 45 H 1.08002 * 119.97038 * 180.27467 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8908 1.0285 0.0000 4 6 2.0433 -0.7205 -1.2732 5 16 3.7985 -0.4086 -1.4811 6 8 4.1149 -0.5785 -2.8559 7 8 4.1007 0.8329 -0.8594 8 6 4.6401 -1.7257 -0.5423 9 6 3.9067 -1.9871 0.7918 10 6 3.4436 -0.6597 1.3664 11 7 1.9908 -0.6500 1.1411 12 6 1.2757 -0.1848 2.3370 13 6 1.5161 -1.1467 3.4719 14 6 2.5899 -0.9561 4.3223 15 6 2.8125 -1.8356 5.3636 16 6 1.9570 -2.9125 5.5559 17 8 2.1729 -3.7784 6.5789 18 6 3.1511 -3.4632 7.4516 19 1 3.7782 -2.6024 7.2721 20 6 3.3519 -4.2440 8.5797 21 7 2.5883 -5.2928 8.7982 22 14 4.7067 -3.8068 9.7892 23 1 4.7140 -4.7909 10.9012 24 1 6.0188 -3.8358 9.0945 25 1 4.4645 -2.4463 10.3330 26 6 0.8832 -3.1048 4.6965 27 6 0.6626 -2.2185 3.6605 28 1 -0.3634 0.6759 0.7740 29 1 -0.3634 0.3323 -0.9724 30 1 -0.3633 -1.0084 0.1984 31 1 1.8748 -1.7929 -1.1757 32 1 1.5042 -0.3465 -2.1436 33 1 4.6492 -2.6410 -1.1342 34 1 5.6664 -1.4222 -0.3363 35 1 3.0438 -2.6291 0.6144 36 1 4.5856 -2.4733 1.4924 37 1 3.9160 0.1689 0.8389 38 1 3.6637 -0.6090 2.4327 39 1 0.2079 -0.1330 2.1246 40 1 1.6391 0.8042 2.6159 41 1 3.2546 -0.1182 4.1725 42 1 3.6510 -1.6859 6.0277 43 1 2.7290 -5.8392 9.5871 44 1 0.2188 -3.9439 4.8407 45 1 -0.1749 -2.3649 2.9945 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933312751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:05 Heat of formation + Delta-G solvation = -63.397771 kcal Electronic energy + Delta-G solvation = -28014.963315 eV Core-core repulsion = 24125.764516 eV Total energy + Delta-G solvation = -3889.198799 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.15094 -40.27424 -38.25572 -37.77115 -37.11541 -35.19369 -34.36583 -33.23623 -31.73516 -30.58485 -29.16375 -27.53673 -27.02781 -25.45758 -23.65846 -22.76699 -22.15125 -21.05794 -19.79638 -19.67995 -18.79871 -18.07914 -17.83145 -17.01429 -16.82234 -16.37249 -16.33764 -16.15066 -15.79442 -15.42592 -15.33014 -14.78803 -14.60548 -14.46282 -14.36914 -14.22561 -13.88781 -13.65478 -13.52240 -13.38008 -13.24448 -13.07379 -12.89051 -12.75004 -12.61167 -12.38181 -12.34351 -12.17926 -12.14347 -12.01307 -11.75770 -11.63956 -11.33377 -11.16482 -11.08302 -10.75552 -9.68614 -9.11335 -8.83904 -8.45140 -6.12745 -0.94933 0.66548 0.74370 1.35526 1.45610 1.51183 1.86681 2.18886 2.63198 2.77547 2.90137 3.01287 3.30038 3.52628 3.59085 3.70404 3.89560 3.99488 4.07808 4.11778 4.18968 4.26483 4.32110 4.46756 4.50058 4.53419 4.66553 4.67318 4.76808 4.81776 4.86334 4.91255 5.01868 5.10061 5.14375 5.18780 5.19196 5.32753 5.36838 5.45306 5.64753 5.77291 5.86944 6.06090 6.08047 6.29486 6.52675 7.00186 7.82881 8.78008 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.002708 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.736820 B =10338.819729 C =11067.671090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.118 3.882 3 H 0.047 0.953 4 C -0.603 4.603 5 S 2.418 3.582 6 O -0.992 6.992 7 O -0.978 6.978 8 C -0.590 4.590 9 C -0.098 4.098 10 C -0.016 4.016 11 N -0.559 5.559 12 C 0.109 3.891 13 C -0.146 4.146 14 C -0.065 4.065 15 C -0.242 4.242 16 C 0.114 3.886 17 O -0.235 6.235 18 C -0.411 4.411 19 H 0.100 0.900 20 C -0.023 4.023 21 N -0.922 5.922 22 Si 1.015 2.985 23 H -0.273 1.273 24 H -0.258 1.258 25 H -0.258 1.258 26 C -0.204 4.204 27 C -0.043 4.043 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.166 0.834 32 H 0.162 0.838 33 H 0.153 0.847 34 H 0.140 0.860 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.046 0.954 41 H 0.133 0.867 42 H 0.113 0.887 43 H 0.272 0.728 44 H 0.109 0.891 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.689 10.549 -20.048 22.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.007 3.993 3 H 0.064 0.936 4 C -0.736 4.736 5 S 2.607 3.393 6 O -0.990 6.990 7 O -0.975 6.975 8 C -0.721 4.721 9 C -0.137 4.137 10 C -0.143 4.143 11 N -0.284 5.284 12 C -0.016 4.016 13 C -0.147 4.147 14 C -0.083 4.083 15 C -0.261 4.261 16 C 0.063 3.937 17 O -0.142 6.142 18 C -0.487 4.487 19 H 0.117 0.883 20 C -0.220 4.220 21 N -0.560 5.560 22 Si 0.835 3.165 23 H -0.197 1.197 24 H -0.182 1.182 25 H -0.183 1.183 26 C -0.224 4.224 27 C -0.061 4.061 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.183 0.817 32 H 0.180 0.820 33 H 0.171 0.829 34 H 0.158 0.842 35 H 0.122 0.878 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.130 0.870 40 H 0.064 0.936 41 H 0.150 0.850 42 H 0.131 0.869 43 H 0.081 0.919 44 H 0.128 0.872 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.517 10.449 -20.462 23.025 hybrid contribution 0.749 -0.162 1.430 1.623 sum -0.768 10.287 -19.031 21.647 Atomic orbital electron populations 1.22094 0.91318 1.03805 1.03385 1.20002 0.98143 0.94635 0.86526 0.93579 1.30574 1.21633 1.13948 1.07413 1.07691 0.79771 0.77379 0.74457 1.93509 1.84367 1.87366 1.33717 1.93445 1.84331 1.42570 1.77148 1.30544 1.12732 1.18550 1.10323 1.21659 1.00840 0.98291 0.92915 1.23233 0.87283 0.98679 1.05058 1.58128 1.05956 1.61293 1.03038 1.21051 1.00614 0.93843 0.86141 1.19555 0.97301 0.99070 0.98818 1.20928 0.96865 0.97521 0.93023 1.21180 1.02866 0.98849 1.03236 1.19950 0.94591 0.89890 0.89220 1.83938 1.52433 1.43765 1.34038 1.21741 1.10503 1.14242 1.02263 0.88258 1.26533 1.01295 0.95227 0.98942 1.70177 1.40253 1.16946 1.28646 0.84694 0.76678 0.78636 0.76523 1.19737 1.18197 1.18277 1.20470 0.98794 1.03836 0.99267 1.20821 0.98735 0.91991 0.94547 0.91063 0.90375 0.90565 0.81653 0.81969 0.82871 0.84217 0.87832 0.90398 0.89038 0.88777 0.87047 0.93597 0.84968 0.86913 0.91927 0.87246 0.83295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.02 71.98 0.58 -0.92 16 2 C 0.12 1.65 2.18 47.00 0.10 1.75 16 3 H 0.05 0.75 7.21 -2.39 -0.02 0.74 16 4 C -0.60 -6.53 5.24 72.68 0.38 -6.15 16 5 S 2.42 40.04 4.92 -56.49 -0.28 39.76 16 6 O -0.99 -23.48 18.06 -127.30 -2.30 -25.78 16 7 O -0.98 -22.72 14.10 -127.30 -1.80 -24.51 16 8 C -0.59 -7.70 6.54 72.48 0.47 -7.22 16 9 C -0.10 -1.63 5.70 30.72 0.18 -1.45 16 10 C -0.02 -0.31 5.26 85.91 0.45 0.14 16 11 N -0.56 -9.58 3.22 -891.06 -2.87 -12.45 16 12 C 0.11 2.07 4.72 85.56 0.40 2.47 16 13 C -0.15 -3.92 4.98 -19.83 -0.10 -4.02 16 14 C -0.06 -2.03 8.03 22.25 0.18 -1.85 16 15 C -0.24 -9.99 9.16 22.39 0.21 -9.78 16 16 C 0.11 5.42 6.64 22.57 0.15 5.57 16 17 O -0.23 -13.88 9.76 -22.73 -0.22 -14.10 16 18 C -0.41 -23.63 9.49 67.92 0.64 -22.99 16 19 H 0.10 5.23 5.21 -2.91 -0.02 5.22 16 20 C -0.02 -1.27 5.49 84.83 0.47 -0.81 16 21 N -0.92 -56.23 13.67 21.61 0.30 -55.93 16 22 Si 1.02 42.47 29.55 68.60 2.03 44.50 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 25 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 26 C -0.20 -8.13 9.99 22.39 0.22 -7.91 16 27 C -0.04 -1.25 9.69 22.25 0.22 -1.04 16 28 H 0.07 0.68 6.54 -2.39 -0.02 0.66 16 29 H 0.08 0.56 7.97 -2.39 -0.02 0.54 16 30 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.17 1.13 7.73 -2.48 -0.02 1.11 16 32 H 0.16 1.12 7.97 -2.48 -0.02 1.10 16 33 H 0.15 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.10 1.59 7.31 -2.38 -0.02 1.57 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.09 1.82 4.19 -2.44 -0.01 1.81 16 38 H 0.09 2.05 4.47 -2.39 -0.01 2.04 16 39 H 0.11 1.66 5.23 -2.39 -0.01 1.65 16 40 H 0.05 0.86 8.08 -2.39 -0.02 0.84 16 41 H 0.13 3.42 7.13 -2.91 -0.02 3.40 16 42 H 0.11 4.84 5.65 -2.91 -0.02 4.82 16 43 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 44 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 45 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -79.64 357.45 0.42 -79.21 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 1.01 Total: 23.52 kcal Atomic # 6 Polarization: -58.77 SS G_CDS: 4.55 Total: -54.22 kcal Atomic # 7 Polarization: -65.81 SS G_CDS: -2.57 Total: -68.38 kcal Atomic # 8 Polarization: -60.08 SS G_CDS: -4.32 Total: -64.39 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: 40.04 SS G_CDS: -0.28 Total: 39.76 kcal Total: -79.64 0.42 -79.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933312751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.814 kcal (2) G-P(sol) polarization free energy of solvation -79.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds