Wall clock time and date at job start Tue Mar 31 2020 22:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47523 * 2 1 4 4 H 1.09002 * 109.46870 * 305.40624 * 3 2 1 5 5 C 1.50697 * 109.47458 * 185.40687 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73730 * 5 3 2 7 7 C 1.37872 * 119.99992 * 64.73700 * 5 3 2 8 8 N 1.31514 * 119.99982 * 187.26393 * 7 5 3 9 9 Si 1.86805 * 120.00136 * 7.25923 * 7 5 3 10 10 H 1.48495 * 109.46975 * 270.00052 * 9 7 5 11 11 H 1.48492 * 109.46822 * 30.00117 * 9 7 5 12 12 H 1.48497 * 109.47044 * 149.99974 * 9 7 5 13 13 N 1.46502 * 109.47201 * 65.40509 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00452 * 13 3 2 15 15 O 1.21276 * 120.00397 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99462 * 179.97438 * 14 13 3 17 17 C 1.53006 * 109.46959 * 179.97438 * 16 14 13 18 18 C 1.50695 * 109.47173 * 180.02562 * 17 16 14 19 19 C 1.38235 * 119.99706 * 269.72801 * 18 17 16 20 20 C 1.38234 * 119.99794 * 179.76768 * 19 18 17 21 21 C 1.38234 * 120.00150 * 0.50564 * 20 19 18 22 22 S 1.76197 * 120.00052 * 179.72773 * 21 20 19 23 23 C 1.81401 * 104.44799 * 270.01748 * 22 21 20 24 24 O 1.42093 * 104.28160 * 26.08737 * 22 21 20 25 25 O 1.42101 * 104.27807 * 153.95252 * 22 21 20 26 26 C 1.38236 * 119.99726 * 359.74560 * 21 20 19 27 27 C 1.38231 * 120.00234 * 359.97438 * 26 21 20 28 28 H 1.08995 * 109.47307 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47493 * 300.00477 * 1 2 3 30 30 H 1.09005 * 109.47229 * 60.00026 * 1 2 3 31 31 H 1.08999 * 109.47493 * 239.99523 * 2 1 3 32 32 H 1.09005 * 109.47229 * 119.99974 * 2 1 3 33 33 H 0.96994 * 120.00225 * 354.93852 * 8 7 5 34 34 H 0.96998 * 120.00194 * 94.99918 * 13 3 2 35 35 H 1.09000 * 109.47349 * 299.99617 * 16 14 13 36 36 H 1.08996 * 109.47125 * 60.00154 * 16 14 13 37 37 H 1.09004 * 109.46682 * 300.00472 * 17 16 14 38 38 H 1.09000 * 109.46919 * 59.99667 * 17 16 14 39 39 H 1.08002 * 120.00163 * 359.97438 * 19 18 17 40 40 H 1.08002 * 120.00162 * 180.22864 * 20 19 18 41 41 H 1.09004 * 109.47451 * 60.00216 * 23 22 21 42 42 H 1.09002 * 109.47601 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.47380 * 300.00141 * 23 22 21 44 44 H 1.08006 * 119.99842 * 179.97438 * 26 21 20 45 45 H 1.07999 * 120.00434 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1310 0.9701 -1.2861 8 7 5.4380 0.8380 -1.3493 9 14 3.0740 0.5148 -2.7575 10 1 2.6850 -0.9153 -2.6640 11 1 1.8532 1.3600 -2.7704 12 1 3.8436 0.7377 -4.0078 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3363 2.6317 0.4528 16 6 0.0541 3.3314 2.6726 17 6 -1.3655 3.8887 2.5497 18 6 -1.7555 4.5595 3.8415 19 6 -2.3813 3.8320 4.8365 20 6 -2.7347 4.4462 6.0234 21 6 -2.4718 5.7902 6.2113 22 16 -2.9287 6.5747 7.7214 23 6 -4.6138 7.1779 7.4262 24 8 -2.9361 5.5215 8.6752 25 8 -2.0230 7.6633 7.8389 26 6 -1.8506 6.5189 5.2142 27 6 -1.4920 5.9034 4.0296 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.9924 1.1425 -0.6140 34 1 2.2853 2.1184 1.9978 35 1 0.0905 2.6048 3.4843 36 1 0.7469 4.1462 2.8830 37 1 -1.4015 4.6154 1.7380 38 1 -2.0586 3.0742 2.3390 39 1 -2.5911 2.7831 4.6879 40 1 -3.2204 3.8770 6.8023 41 1 -5.2653 6.3361 7.1916 42 1 -4.9809 7.6828 8.3198 43 1 -4.6082 7.8770 6.5899 44 1 -1.6455 7.5691 5.3608 45 1 -1.0070 6.4727 3.2504 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935402534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:29 Heat of formation + Delta-G solvation = -96.775991 kcal Electronic energy + Delta-G solvation = -26424.011635 eV Core-core repulsion = 22533.365447 eV Total energy + Delta-G solvation = -3890.646188 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.92985 -39.13286 -37.48631 -36.32742 -35.53524 -34.17919 -32.47060 -31.61846 -31.39386 -30.22236 -29.78907 -27.34116 -25.04622 -23.22480 -22.39903 -21.79159 -20.37086 -19.56596 -19.43845 -18.19155 -17.83756 -16.62056 -16.53829 -16.52289 -15.73133 -15.46300 -15.37825 -14.98825 -14.74717 -14.13429 -13.88219 -13.82846 -13.70401 -13.51041 -13.35415 -13.10222 -12.74755 -12.51086 -12.46781 -12.36472 -12.33499 -12.08974 -11.95108 -11.83342 -11.58336 -11.50281 -11.05567 -10.95782 -10.91148 -10.73224 -10.50127 -9.84743 -9.74348 -9.53300 -9.37925 -9.15054 -8.91638 -8.54912 -8.12486 -6.58698 -4.26724 -0.36317 0.47366 0.97104 2.46201 3.05265 3.19479 3.33109 3.42367 3.54440 3.56117 3.69331 3.90723 4.27209 4.31115 4.37855 4.51267 4.55359 4.56445 4.96067 4.96519 5.00640 5.12205 5.15565 5.17508 5.29779 5.42740 5.55287 5.64170 5.72391 5.77448 5.85901 5.97482 6.02300 6.03135 6.19066 6.24996 6.51155 6.64401 6.70518 6.86454 6.96182 7.29783 7.34705 7.60887 8.19473 8.43116 8.66625 8.94164 9.43995 10.81707 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.028645 B = 0.001941 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.255677 B =14419.186385 C =14723.103895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.241 3.759 4 H 0.048 0.952 5 C -0.610 4.610 6 H 0.061 0.939 7 C 0.035 3.965 8 N -0.904 5.904 9 Si 1.049 2.951 10 H -0.280 1.280 11 H -0.273 1.273 12 H -0.287 1.287 13 N -0.702 5.702 14 C 0.501 3.499 15 O -0.552 6.552 16 C -0.137 4.137 17 C -0.074 4.074 18 C -0.019 4.019 19 C -0.138 4.138 20 C -0.023 4.023 21 C -0.669 4.669 22 S 2.502 3.498 23 C -0.651 4.651 24 O -0.939 6.939 25 O -0.939 6.939 26 C -0.022 4.022 27 C -0.137 4.137 28 H 0.031 0.969 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.268 0.732 34 H 0.393 0.607 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.134 0.866 40 H 0.140 0.860 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.141 0.859 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.946 11.219 16.585 28.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C 0.137 3.863 4 H 0.066 0.934 5 C -0.648 4.648 6 H 0.080 0.920 7 C -0.171 4.171 8 N -0.538 5.538 9 Si 0.878 3.122 10 H -0.207 1.207 11 H -0.199 1.199 12 H -0.214 1.214 13 N -0.349 5.349 14 C 0.286 3.714 15 O -0.432 6.432 16 C -0.178 4.178 17 C -0.111 4.111 18 C -0.019 4.019 19 C -0.157 4.157 20 C -0.041 4.041 21 C -0.756 4.756 22 S 2.682 3.318 23 C -0.800 4.800 24 O -0.937 6.937 25 O -0.936 6.936 26 C -0.041 4.041 27 C -0.156 4.156 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.225 0.775 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.152 0.848 40 H 0.158 0.842 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.158 0.842 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -20.902 10.622 15.108 27.892 hybrid contribution 0.028 0.437 1.200 1.278 sum -20.873 11.059 16.308 28.705 Atomic orbital electron populations 1.21888 0.97175 0.98946 1.02113 1.22250 0.94000 0.99962 1.01351 1.19236 0.95870 0.88512 0.82665 0.93408 1.22170 0.89767 1.48153 1.04760 0.92044 1.25712 0.97515 0.93611 1.00261 1.70830 1.04425 1.42440 1.36072 0.83933 0.75294 0.77161 0.75800 1.20710 1.19906 1.21383 1.46270 1.14711 1.55872 1.18064 1.20381 0.82631 0.79233 0.89157 1.90662 1.51089 1.60172 1.41237 1.21651 0.97199 1.01479 0.97426 1.20497 0.96235 1.01057 0.93341 1.20410 0.92245 0.93771 0.95495 1.21261 1.00370 1.00614 0.93428 1.20925 0.94129 0.92319 0.96766 1.30422 1.17544 1.05730 1.21938 1.05061 0.77323 0.74913 0.74521 1.30233 1.23975 1.13454 1.12373 1.93586 1.86808 1.55182 1.58078 1.93590 1.59736 1.54857 1.85443 1.20933 0.91933 0.99821 0.91419 1.21273 1.01515 0.94765 0.98078 0.95003 0.93160 0.92901 0.92257 0.92776 0.92133 0.77463 0.89224 0.89132 0.89498 0.89550 0.84839 0.84177 0.84980 0.85075 0.84966 0.84154 0.84784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.52 37.15 0.32 -2.48 16 2 C -0.14 -2.97 5.20 -26.74 -0.14 -3.11 16 3 C 0.24 5.60 1.81 -69.08 -0.13 5.48 16 4 H 0.05 1.23 6.07 -51.93 -0.32 0.92 16 5 C -0.61 -16.29 9.09 -34.44 -0.31 -16.61 16 6 H 0.06 1.71 7.95 -52.48 -0.42 1.30 16 7 C 0.03 0.98 5.42 -17.82 -0.10 0.88 16 8 N -0.90 -26.93 13.70 55.43 0.76 -26.17 16 9 Si 1.05 25.23 25.39 -169.99 -4.32 20.91 16 10 H -0.28 -6.39 6.73 56.52 0.38 -6.01 16 11 H -0.27 -6.35 6.38 56.52 0.36 -5.99 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.70 -13.43 5.03 -54.93 -0.28 -13.71 16 14 C 0.50 8.65 6.42 -10.98 -0.07 8.58 16 15 O -0.55 -11.19 13.12 5.56 0.07 -11.12 16 16 C -0.14 -1.67 5.68 -27.88 -0.16 -1.82 16 17 C -0.07 -0.81 4.63 -27.88 -0.13 -0.94 16 18 C -0.02 -0.18 5.13 -104.63 -0.54 -0.72 16 19 C -0.14 -1.22 9.70 -39.58 -0.38 -1.61 16 20 C -0.02 -0.19 9.47 -39.58 -0.37 -0.56 16 21 C -0.67 -5.44 5.66 -39.58 -0.22 -5.67 16 22 S 2.50 17.23 5.80 -107.50 -0.62 16.61 16 23 C -0.65 -1.74 10.80 101.05 1.09 -0.65 16 24 O -0.94 -9.53 17.13 -57.54 -0.99 -10.51 16 25 O -0.94 -9.58 17.13 -57.54 -0.99 -10.56 16 26 C -0.02 -0.19 9.47 -39.58 -0.37 -0.56 16 27 C -0.14 -1.24 9.70 -39.59 -0.38 -1.62 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.95 5.64 -51.93 -0.29 0.65 16 30 H 0.05 1.08 7.87 -51.93 -0.41 0.67 16 31 H 0.06 1.35 4.43 -51.93 -0.23 1.12 16 32 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.27 7.91 8.72 -40.82 -0.36 7.56 16 34 H 0.39 6.74 8.53 -40.82 -0.35 6.39 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 1.00 8.04 -51.93 -0.42 0.58 16 38 H 0.09 0.97 8.04 -51.93 -0.42 0.56 16 39 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 40 H 0.14 0.91 7.57 -52.49 -0.40 0.51 16 41 H 0.13 0.18 8.14 -51.92 -0.42 -0.24 16 42 H 0.13 0.17 8.14 -51.92 -0.42 -0.25 16 43 H 0.13 0.19 8.14 -51.92 -0.42 -0.24 16 44 H 0.14 0.93 7.57 -52.48 -0.40 0.54 16 45 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 377.76 15.07 5.69 5.69 Total: -1.00 -36.35 377.76 -9.23 -45.58 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.66 Total: 4.68 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -1.90 Total: -21.41 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.48 Total: -39.87 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -1.90 Total: -32.20 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -4.32 Total: 20.91 kcal Atomic # 16 Polarization: 17.23 SS G_CDS: -0.62 Total: 16.61 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.35 -9.23 -45.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935402534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.197 kcal (2) G-P(sol) polarization free energy of solvation -36.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds