Wall clock time and date at job start Tue Mar 31 2020 22:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47523 * 2 1 4 4 H 1.09002 * 109.46870 * 305.40624 * 3 2 1 5 5 C 1.50697 * 109.47458 * 185.40687 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73730 * 5 3 2 7 7 C 1.37872 * 119.99992 * 64.73700 * 5 3 2 8 8 N 1.31514 * 119.99982 * 187.26393 * 7 5 3 9 9 Si 1.86805 * 120.00136 * 7.25923 * 7 5 3 10 10 H 1.48495 * 109.46975 * 270.00052 * 9 7 5 11 11 H 1.48492 * 109.46822 * 30.00117 * 9 7 5 12 12 H 1.48497 * 109.47044 * 149.99974 * 9 7 5 13 13 N 1.46502 * 109.47201 * 65.40509 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00452 * 13 3 2 15 15 O 1.21276 * 120.00397 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99462 * 179.97438 * 14 13 3 17 17 C 1.53006 * 109.46959 * 179.97438 * 16 14 13 18 18 C 1.50695 * 109.47173 * 180.02562 * 17 16 14 19 19 C 1.38235 * 119.99706 * 269.72801 * 18 17 16 20 20 C 1.38234 * 119.99794 * 179.76768 * 19 18 17 21 21 C 1.38234 * 120.00150 * 0.50564 * 20 19 18 22 22 S 1.76197 * 120.00052 * 179.72773 * 21 20 19 23 23 C 1.81401 * 104.44799 * 270.01748 * 22 21 20 24 24 O 1.42093 * 104.28160 * 26.08737 * 22 21 20 25 25 O 1.42101 * 104.27807 * 153.95252 * 22 21 20 26 26 C 1.38236 * 119.99726 * 359.74560 * 21 20 19 27 27 C 1.38231 * 120.00234 * 359.97438 * 26 21 20 28 28 H 1.08995 * 109.47307 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47493 * 300.00477 * 1 2 3 30 30 H 1.09005 * 109.47229 * 60.00026 * 1 2 3 31 31 H 1.08999 * 109.47493 * 239.99523 * 2 1 3 32 32 H 1.09005 * 109.47229 * 119.99974 * 2 1 3 33 33 H 0.96994 * 120.00225 * 354.93852 * 8 7 5 34 34 H 0.96998 * 120.00194 * 94.99918 * 13 3 2 35 35 H 1.09000 * 109.47349 * 299.99617 * 16 14 13 36 36 H 1.08996 * 109.47125 * 60.00154 * 16 14 13 37 37 H 1.09004 * 109.46682 * 300.00472 * 17 16 14 38 38 H 1.09000 * 109.46919 * 59.99667 * 17 16 14 39 39 H 1.08002 * 120.00163 * 359.97438 * 19 18 17 40 40 H 1.08002 * 120.00162 * 180.22864 * 20 19 18 41 41 H 1.09004 * 109.47451 * 60.00216 * 23 22 21 42 42 H 1.09002 * 109.47601 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.47380 * 300.00141 * 23 22 21 44 44 H 1.08006 * 119.99842 * 179.97438 * 26 21 20 45 45 H 1.07999 * 120.00434 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1310 0.9701 -1.2861 8 7 5.4380 0.8380 -1.3493 9 14 3.0740 0.5148 -2.7575 10 1 2.6850 -0.9153 -2.6640 11 1 1.8532 1.3600 -2.7704 12 1 3.8436 0.7377 -4.0078 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3363 2.6317 0.4528 16 6 0.0541 3.3314 2.6726 17 6 -1.3655 3.8887 2.5497 18 6 -1.7555 4.5595 3.8415 19 6 -2.3813 3.8320 4.8365 20 6 -2.7347 4.4462 6.0234 21 6 -2.4718 5.7902 6.2113 22 16 -2.9287 6.5747 7.7214 23 6 -4.6138 7.1779 7.4262 24 8 -2.9361 5.5215 8.6752 25 8 -2.0230 7.6633 7.8389 26 6 -1.8506 6.5189 5.2142 27 6 -1.4920 5.9034 4.0296 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.9924 1.1425 -0.6140 34 1 2.2853 2.1184 1.9978 35 1 0.0905 2.6048 3.4843 36 1 0.7469 4.1462 2.8830 37 1 -1.4015 4.6154 1.7380 38 1 -2.0586 3.0742 2.3390 39 1 -2.5911 2.7831 4.6879 40 1 -3.2204 3.8770 6.8023 41 1 -5.2653 6.3361 7.1916 42 1 -4.9809 7.6828 8.3198 43 1 -4.6082 7.8770 6.5899 44 1 -1.6455 7.5691 5.3608 45 1 -1.0070 6.4727 3.2504 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935402534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:28 Heat of formation + Delta-G solvation = -123.542477 kcal Electronic energy + Delta-G solvation = -26425.172316 eV Core-core repulsion = 22533.365447 eV Total energy + Delta-G solvation = -3891.806870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.97561 -40.22487 -38.12733 -37.20520 -36.96542 -35.12368 -34.46425 -33.20532 -32.01838 -31.00748 -30.21587 -29.11218 -26.07057 -24.21889 -23.85318 -22.77505 -21.80731 -21.15440 -20.00829 -19.77778 -18.77573 -17.90407 -17.32397 -17.14322 -17.12031 -16.61614 -16.18732 -15.96567 -15.63852 -15.38200 -15.01710 -14.79758 -14.50108 -14.40334 -14.33365 -14.19902 -13.92965 -13.90435 -13.81942 -13.43251 -13.13076 -13.09733 -13.02762 -12.81311 -12.73387 -12.48006 -12.37456 -12.27359 -12.02347 -11.86502 -11.72163 -11.54086 -11.49443 -10.99085 -10.71496 -10.67513 -10.09111 -10.01483 -9.78256 -8.79577 -6.48465 -0.83904 -0.18553 0.33076 1.39654 1.49270 1.66646 1.81400 1.94506 2.36040 2.38680 2.59799 3.01338 3.06014 3.20936 3.64960 3.75737 3.96100 4.00367 4.09011 4.12571 4.24350 4.25465 4.29318 4.37893 4.38343 4.50778 4.52280 4.63408 4.75265 4.83308 4.87363 4.97923 5.04315 5.06963 5.10699 5.14728 5.18262 5.19805 5.29408 5.53413 5.54469 5.65802 5.67023 5.87443 5.98623 6.50397 6.88039 7.27273 7.48394 8.59295 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.028645 B = 0.001941 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.255677 B =14419.186385 C =14723.103895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.135 4.135 3 C 0.246 3.754 4 H 0.025 0.975 5 C -0.605 4.605 6 H 0.039 0.961 7 C -0.013 4.013 8 N -0.936 5.936 9 Si 1.081 2.919 10 H -0.258 1.258 11 H -0.265 1.265 12 H -0.287 1.287 13 N -0.707 5.707 14 C 0.500 3.500 15 O -0.581 6.581 16 C -0.126 4.126 17 C -0.065 4.065 18 C -0.030 4.030 19 C -0.143 4.143 20 C -0.032 4.032 21 C -0.670 4.670 22 S 2.507 3.493 23 C -0.625 4.625 24 O -0.978 6.978 25 O -0.979 6.979 26 C -0.032 4.032 27 C -0.146 4.146 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.039 0.961 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.257 0.743 34 H 0.402 0.598 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.147 0.853 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.154 0.846 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.886 11.516 17.587 31.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.174 4.174 3 C 0.141 3.859 4 H 0.043 0.957 5 C -0.643 4.643 6 H 0.057 0.943 7 C -0.212 4.212 8 N -0.572 5.572 9 Si 0.904 3.096 10 H -0.183 1.183 11 H -0.189 1.189 12 H -0.214 1.214 13 N -0.356 5.356 14 C 0.288 3.712 15 O -0.462 6.462 16 C -0.165 4.165 17 C -0.103 4.103 18 C -0.030 4.030 19 C -0.162 4.162 20 C -0.050 4.050 21 C -0.756 4.756 22 S 2.691 3.309 23 C -0.779 4.779 24 O -0.976 6.976 25 O -0.977 6.977 26 C -0.051 4.051 27 C -0.164 4.164 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.236 0.764 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.164 0.836 40 H 0.173 0.827 41 H 0.172 0.828 42 H 0.171 0.829 43 H 0.171 0.829 44 H 0.171 0.829 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -23.809 10.908 16.149 30.768 hybrid contribution 0.869 0.455 0.985 1.390 sum -22.940 11.363 17.134 30.805 Atomic orbital electron populations 1.21768 0.95090 1.00539 1.01674 1.22153 0.95796 0.98336 1.01101 1.18881 0.93269 0.89825 0.83971 0.95733 1.22389 0.91789 1.46444 1.03688 0.94286 1.26881 0.97726 0.93698 1.02910 1.70933 1.05405 1.44809 1.36006 0.83526 0.74355 0.78476 0.73204 1.18308 1.18949 1.21398 1.46153 1.15975 1.56418 1.17008 1.21187 0.81307 0.78196 0.90511 1.90648 1.51714 1.61002 1.42824 1.21627 0.98248 1.01934 0.94719 1.20362 0.95254 1.00714 0.93935 1.20285 0.93538 0.94089 0.95102 1.21462 1.00013 1.01320 0.93370 1.21182 0.94233 0.92577 0.97040 1.30617 1.17056 1.05904 1.22023 1.04785 0.78962 0.73703 0.73496 1.30037 1.18812 1.14680 1.14343 1.93535 1.88124 1.56556 1.59347 1.93537 1.62864 1.55462 1.85813 1.21160 0.91951 1.00656 0.91335 1.21453 1.01568 0.94790 0.98637 0.92349 0.92781 0.94156 0.93249 0.92291 0.93390 0.76385 0.87075 0.87711 0.90440 0.89925 0.83569 0.82678 0.82835 0.82928 0.82920 0.82872 0.83978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.90 8.52 71.98 0.61 -4.29 16 2 C -0.14 -5.70 5.20 30.59 0.16 -5.54 16 3 C 0.25 11.36 1.81 44.24 0.08 11.44 16 4 H 0.02 1.27 6.07 -2.39 -0.01 1.26 16 5 C -0.60 -32.75 9.09 25.60 0.23 -32.52 16 6 H 0.04 2.24 7.95 -2.91 -0.02 2.21 16 7 C -0.01 -0.72 5.42 84.65 0.46 -0.26 16 8 N -0.94 -56.97 13.70 21.45 0.29 -56.67 16 9 Si 1.08 50.79 25.39 68.60 1.74 52.53 16 10 H -0.26 -11.12 6.73 99.48 0.67 -10.45 16 11 H -0.26 -11.94 6.38 99.48 0.63 -11.31 16 12 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 13 N -0.71 -26.56 5.03 -446.09 -2.24 -28.80 16 14 C 0.50 16.69 6.42 87.66 0.56 17.25 16 15 O -0.58 -23.05 13.12 -3.02 -0.04 -23.09 16 16 C -0.13 -2.81 5.68 29.85 0.17 -2.64 16 17 C -0.06 -1.32 4.63 29.85 0.14 -1.19 16 18 C -0.03 -0.53 5.13 -19.87 -0.10 -0.63 16 19 C -0.14 -2.26 9.70 22.27 0.22 -2.05 16 20 C -0.03 -0.47 9.47 22.27 0.21 -0.26 16 21 C -0.67 -9.84 5.66 22.27 0.13 -9.71 16 22 S 2.51 30.92 5.80 -56.49 -0.33 30.59 16 23 C -0.62 -0.98 10.80 113.37 1.22 0.24 16 24 O -0.98 -19.04 17.13 -127.65 -2.19 -21.23 16 25 O -0.98 -19.36 17.13 -127.65 -2.19 -21.55 16 26 C -0.03 -0.50 9.47 22.27 0.21 -0.29 16 27 C -0.15 -2.42 9.70 22.27 0.22 -2.21 16 28 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.05 1.92 5.64 -2.39 -0.01 1.91 16 30 H 0.04 1.57 7.87 -2.38 -0.02 1.55 16 31 H 0.05 2.17 4.43 -2.39 -0.01 2.16 16 32 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 33 H 0.26 15.68 8.72 -92.71 -0.81 14.87 16 34 H 0.40 13.52 8.53 -92.71 -0.79 12.73 16 35 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.08 1.71 8.04 -2.38 -0.02 1.70 16 38 H 0.08 1.74 8.04 -2.39 -0.02 1.72 16 39 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 40 H 0.16 1.73 7.57 -2.91 -0.02 1.71 16 41 H 0.15 -0.27 8.14 -2.39 -0.02 -0.29 16 42 H 0.15 -0.25 8.14 -2.39 -0.02 -0.26 16 43 H 0.15 -0.23 8.14 -2.39 -0.02 -0.25 16 44 H 0.15 1.85 7.57 -2.91 -0.02 1.83 16 45 H 0.14 2.02 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -80.02 377.76 -0.36 -80.39 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.07 Total: 20.47 kcal Atomic # 6 Polarization: -37.14 SS G_CDS: 4.52 Total: -32.63 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -1.95 Total: -85.48 kcal Atomic # 8 Polarization: -61.46 SS G_CDS: -4.41 Total: -65.87 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 1.74 Total: 52.53 kcal Atomic # 16 Polarization: 30.92 SS G_CDS: -0.33 Total: 30.59 kcal Total: -80.02 -0.36 -80.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935402534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.155 kcal (2) G-P(sol) polarization free energy of solvation -80.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds