Wall clock time and date at job start Tue Mar 31 2020 22:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47014 * 2 1 4 4 H 1.08998 * 109.46949 * 54.99488 * 3 2 1 5 5 C 1.50695 * 109.46790 * 174.99621 * 3 2 1 6 6 H 1.08001 * 119.99979 * 119.99961 * 5 3 2 7 7 C 1.37879 * 120.00283 * 299.99776 * 5 3 2 8 8 N 1.31512 * 119.99936 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00068 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47250 * 59.99937 * 9 7 5 11 11 H 1.48496 * 109.47052 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47344 * 300.00112 * 9 7 5 13 13 N 1.46496 * 109.46766 * 294.99391 * 3 2 1 14 14 C 1.34784 * 119.99741 * 85.00457 * 13 3 2 15 15 O 1.21281 * 120.00093 * 359.97438 * 14 13 3 16 16 C 1.50696 * 119.99865 * 179.97438 * 14 13 3 17 17 C 1.53000 * 109.47110 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.47116 * 179.97438 * 17 16 14 19 19 C 1.38233 * 120.00109 * 269.72529 * 18 17 16 20 20 C 1.38238 * 119.99754 * 179.76611 * 19 18 17 21 21 C 1.38234 * 120.00038 * 0.48818 * 20 19 18 22 22 S 1.76199 * 120.00356 * 179.76975 * 21 20 19 23 23 C 1.81400 * 104.44838 * 270.02269 * 22 21 20 24 24 O 1.42103 * 104.27527 * 26.09136 * 22 21 20 25 25 O 1.42094 * 104.27845 * 153.94727 * 22 21 20 26 26 C 1.38238 * 120.00047 * 359.78460 * 21 20 19 27 27 C 1.38235 * 120.00108 * 359.96171 * 26 21 20 28 28 H 1.09004 * 109.46626 * 60.00370 * 1 2 3 29 29 H 1.08999 * 109.46990 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47583 * 300.00349 * 1 2 3 31 31 H 1.08998 * 109.47583 * 239.99650 * 2 1 3 32 32 H 1.09004 * 109.46626 * 119.99630 * 2 1 3 33 33 H 0.96995 * 120.00021 * 179.97438 * 8 7 5 34 34 H 0.96998 * 120.00681 * 264.99793 * 13 3 2 35 35 H 1.09000 * 109.47543 * 59.99570 * 16 14 13 36 36 H 1.09008 * 109.47338 * 300.00084 * 16 14 13 37 37 H 1.09000 * 109.46884 * 60.00335 * 17 16 14 38 38 H 1.09000 * 109.46955 * 299.99651 * 17 16 14 39 39 H 1.08004 * 119.99934 * 0.02562 * 19 18 17 40 40 H 1.07999 * 119.99931 * 180.25459 * 20 19 18 41 41 H 1.08996 * 109.47149 * 59.99505 * 23 22 21 42 42 H 1.08998 * 109.47195 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.46722 * 299.99725 * 23 22 21 44 44 H 1.08000 * 120.00559 * 179.97438 * 26 21 20 45 45 H 1.07999 * 120.00165 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4443 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3367 2.1730 9 14 6.0048 0.8813 1.3820 10 1 6.4994 2.2815 1.3823 11 1 6.3976 0.2179 2.6512 12 1 6.5975 0.1473 0.2352 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0368 3.3385 -2.6546 17 6 -1.3825 3.8941 -2.5214 18 6 -1.7807 4.5688 -3.8088 19 6 -1.5251 5.9150 -3.9915 20 6 -1.8860 6.5327 -5.1744 21 6 -2.5116 5.8066 -6.1705 22 16 -2.9772 6.5953 -7.6757 23 6 -4.6610 7.1966 -7.3697 24 8 -2.0726 7.6847 -7.7948 25 8 -2.9890 5.5449 -8.6326 26 6 -2.7724 4.4617 -5.9855 27 6 -2.4068 3.8427 -4.8048 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8291 -0.0617 2.9496 34 1 2.2720 2.1231 -1.9978 35 1 0.0682 2.6144 -3.4688 36 1 0.7282 4.1540 -2.8669 37 1 -1.4143 4.6182 -1.7073 38 1 -2.0737 3.0783 -2.3095 39 1 -1.0396 6.4831 -3.2118 40 1 -1.6825 7.5835 -5.3188 41 1 -4.6513 7.8931 -6.5314 42 1 -5.0327 7.7047 -8.2595 43 1 -5.3106 6.3536 -7.1342 44 1 -3.2616 3.8944 -6.7635 45 1 -2.6109 2.7921 -4.6601 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935402537.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:31 Heat of formation + Delta-G solvation = -121.412001 kcal Electronic energy + Delta-G solvation = -26335.645600 eV Core-core repulsion = 22443.931115 eV Total energy + Delta-G solvation = -3891.714485 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.88050 -40.16951 -38.11163 -37.03964 -36.94320 -35.08678 -34.27284 -32.84050 -32.00146 -30.96147 -30.19957 -28.91248 -26.12851 -24.78011 -23.83436 -22.63452 -21.68976 -20.99870 -19.99247 -18.90212 -18.73311 -17.53213 -17.22370 -17.13194 -17.10432 -16.58048 -16.18183 -16.00871 -15.88280 -15.36362 -14.96178 -14.64115 -14.55721 -14.35182 -14.17885 -13.91438 -13.85618 -13.63738 -13.33168 -13.21740 -13.11586 -13.09860 -13.01236 -12.85733 -12.77054 -12.65839 -12.33737 -12.18534 -12.06917 -11.98704 -11.83595 -11.57358 -11.52232 -11.05614 -10.66568 -10.50043 -10.06190 -9.99750 -9.58894 -8.16166 -6.33361 -0.82497 -0.16742 0.34772 1.44280 1.45571 1.53354 1.91393 1.95822 2.34730 2.43618 2.74081 3.07427 3.12998 3.22393 3.70987 3.77476 3.98368 4.03748 4.11145 4.13789 4.26948 4.33506 4.40187 4.49954 4.53470 4.58478 4.64300 4.76551 4.79610 4.85993 4.99161 5.06185 5.07730 5.12246 5.16926 5.21287 5.27639 5.44938 5.56499 5.57057 5.65339 5.81066 5.88959 5.94690 6.18464 6.75381 7.03847 7.34279 7.63852 8.88681 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024428 B = 0.001909 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.928033 B =14661.939521 C =15193.506874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.122 4.122 3 C 0.278 3.722 4 H -0.003 1.003 5 C -0.549 4.549 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.709 5.709 14 C 0.496 3.504 15 O -0.588 6.588 16 C -0.124 4.124 17 C -0.066 4.066 18 C -0.029 4.029 19 C -0.145 4.145 20 C -0.031 4.031 21 C -0.670 4.670 22 S 2.507 3.493 23 C -0.625 4.625 24 O -0.979 6.979 25 O -0.978 6.978 26 C -0.031 4.031 27 C -0.144 4.144 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.025 0.975 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.264 0.736 34 H 0.403 0.597 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.143 0.857 40 H 0.155 0.845 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.156 0.844 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.456 12.669 -19.556 28.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.015 0.985 5 C -0.587 4.587 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.190 1.190 13 N -0.358 5.358 14 C 0.284 3.716 15 O -0.470 6.470 16 C -0.164 4.164 17 C -0.103 4.103 18 C -0.029 4.029 19 C -0.164 4.164 20 C -0.050 4.050 21 C -0.756 4.756 22 S 2.691 3.309 23 C -0.779 4.779 24 O -0.976 6.976 25 O -0.975 6.975 26 C -0.050 4.050 27 C -0.162 4.162 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.237 0.763 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.161 0.839 40 H 0.172 0.828 41 H 0.171 0.829 42 H 0.171 0.829 43 H 0.171 0.829 44 H 0.173 0.827 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -16.432 12.600 -19.446 28.406 hybrid contribution 1.042 -0.430 1.194 1.642 sum -15.389 12.170 -18.253 26.798 Atomic orbital electron populations 1.21667 0.96809 0.99087 1.00366 1.21786 0.93915 0.99236 1.01146 1.18325 0.93435 0.89176 0.81638 0.98468 1.21570 0.91658 1.38888 1.06608 0.91190 1.25764 1.03208 0.94466 0.95110 1.70037 1.37055 1.38308 1.09851 0.85453 0.79289 0.78413 0.77508 1.19709 1.21237 1.19025 1.46316 1.15895 1.56164 1.17441 1.21221 0.81563 0.78434 0.90398 1.90657 1.52337 1.61299 1.42695 1.21620 0.98044 1.01932 0.94758 1.20355 0.95433 1.00547 0.94011 1.20280 0.93531 0.94148 0.94972 1.21450 1.01593 0.94654 0.98678 1.21161 0.91914 1.00682 0.91248 1.30622 1.17059 1.05913 1.22024 1.04776 0.78933 0.73702 0.73489 1.30039 1.18849 1.14661 1.14371 1.93537 1.62897 1.55371 1.85790 1.93535 1.88125 1.56722 1.59158 1.21173 0.94260 0.92585 0.96958 1.21454 1.00021 1.01282 0.93487 0.93422 0.93732 0.95602 0.94208 0.91208 0.92637 0.76265 0.87107 0.87391 0.90626 0.90358 0.83931 0.82764 0.82921 0.82910 0.82876 0.82673 0.83738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.36 8.51 71.98 0.61 -4.75 16 2 C -0.12 -5.93 5.45 30.60 0.17 -5.76 16 3 C 0.28 14.00 2.24 44.25 0.10 14.10 16 4 H 0.00 -0.15 7.58 -2.39 -0.02 -0.17 16 5 C -0.55 -28.78 8.73 25.60 0.22 -28.55 16 6 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.01 0.79 5.29 84.66 0.45 1.23 16 8 N -0.91 -52.07 11.29 21.45 0.24 -51.83 16 9 Si 0.97 41.93 29.54 68.60 2.03 43.95 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 13 N -0.71 -27.99 5.02 -446.10 -2.24 -30.23 16 14 C 0.50 17.98 6.40 87.65 0.56 18.54 16 15 O -0.59 -26.07 13.12 -3.03 -0.04 -26.11 16 16 C -0.12 -2.97 5.68 29.85 0.17 -2.80 16 17 C -0.07 -1.47 4.64 29.85 0.14 -1.34 16 18 C -0.03 -0.55 5.13 -19.86 -0.10 -0.65 16 19 C -0.15 -2.52 9.70 22.27 0.22 -2.30 16 20 C -0.03 -0.50 9.47 22.27 0.21 -0.29 16 21 C -0.67 -10.17 5.66 22.27 0.13 -10.04 16 22 S 2.51 31.65 5.80 -56.49 -0.33 31.32 16 23 C -0.63 -1.23 10.80 113.37 1.22 0.00 16 24 O -0.98 -19.45 17.13 -127.65 -2.19 -21.64 16 25 O -0.98 -19.30 17.13 -127.65 -2.19 -21.48 16 26 C -0.03 -0.48 9.47 22.27 0.21 -0.27 16 27 C -0.14 -2.44 9.70 22.27 0.22 -2.23 16 28 H 0.05 1.98 5.64 -2.38 -0.01 1.96 16 29 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.02 1.22 7.85 -2.39 -0.02 1.20 16 31 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 3.83 5.95 -2.38 -0.01 3.81 16 33 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 34 H 0.40 13.46 8.54 -92.71 -0.79 12.67 16 35 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.11 2.24 8.14 -2.38 -0.02 2.22 16 37 H 0.08 1.85 8.04 -2.39 -0.02 1.83 16 38 H 0.08 1.87 8.04 -2.39 -0.02 1.85 16 39 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 40 H 0.15 1.89 7.57 -2.91 -0.02 1.87 16 41 H 0.15 -0.17 8.14 -2.39 -0.02 -0.19 16 42 H 0.15 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.15 -0.19 8.14 -2.39 -0.02 -0.21 16 44 H 0.16 1.84 7.57 -2.91 -0.02 1.82 16 45 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -78.61 383.16 0.02 -78.60 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.21 Total: 22.53 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 4.52 Total: -25.11 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -2.00 Total: -82.07 kcal Atomic # 8 Polarization: -64.81 SS G_CDS: -4.41 Total: -69.22 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 16 Polarization: 31.65 SS G_CDS: -0.33 Total: 31.32 kcal Total: -78.61 0.02 -78.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935402537.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.813 kcal (2) G-P(sol) polarization free energy of solvation -78.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds