Wall clock time and date at job start Tue Mar 31 2020 23:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.44543 * 2 1 4 4 C 1.53218 * 109.45895 * 240.03999 * 2 1 3 5 5 C 1.53556 * 108.83851 * 172.66254 * 4 2 1 6 6 H 1.08997 * 109.80256 * 286.86308 * 5 4 2 7 7 C 1.52994 * 109.85292 * 166.02054 * 5 4 2 8 8 F 1.39902 * 109.47357 * 306.66045 * 7 5 4 9 9 F 1.39904 * 109.47175 * 66.66031 * 7 5 4 10 10 N 1.46873 * 107.75972 * 46.43083 * 5 4 2 11 11 N 1.39490 * 127.33861 * 164.78261 * 10 5 4 12 12 C 1.30451 * 109.16026 * 179.70083 * 11 10 5 13 13 C 1.41657 * 108.23335 * 0.44711 * 12 11 10 14 14 C 1.46703 * 126.56251 * 179.81887 * 13 12 11 15 15 O 1.21708 * 119.99903 * 165.27267 * 14 13 12 16 16 N 1.34773 * 119.99692 * 345.26739 * 14 13 12 17 17 C 1.37013 * 119.99873 * 178.28812 * 16 14 13 18 18 H 1.08002 * 119.99867 * 21.99925 * 17 16 14 19 19 C 1.38934 * 120.00140 * 201.71859 * 17 16 14 20 20 N 1.31441 * 120.00368 * 329.57475 * 19 17 16 21 21 Si 1.86804 * 120.00039 * 149.57805 * 19 17 16 22 22 H 1.48499 * 109.47112 * 60.00051 * 21 19 17 23 23 H 1.48492 * 109.47174 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46917 * 299.99923 * 21 19 17 25 25 C 1.46503 * 120.00612 * 358.29866 * 16 14 13 26 26 C 1.47194 * 109.47484 * 93.98961 * 25 16 14 27 27 N 7.64823 * 146.01008 * 97.11599 * 2 1 3 28 28 C 1.35140 * 124.08962 * 344.77431 * 10 5 4 29 29 N 1.37866 * 125.25392 * 0.05102 * 28 10 5 30 30 H 1.08998 * 109.46940 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47267 * 299.95987 * 1 2 3 32 32 H 1.08999 * 109.46834 * 59.96100 * 1 2 3 33 33 H 1.09002 * 109.57714 * 52.85811 * 4 2 1 34 34 H 1.09000 * 109.57989 * 292.46840 * 4 2 1 35 35 H 1.08999 * 109.47411 * 186.65862 * 7 5 4 36 36 H 1.07997 * 125.88671 * 180.27240 * 12 11 10 37 37 H 0.96999 * 120.00366 * 179.97438 * 20 19 17 38 38 H 1.08993 * 109.47072 * 213.99875 * 25 16 14 39 39 H 1.09004 * 109.46732 * 333.99371 * 25 16 14 40 40 H 1.00899 * 110.99849 * 105.67773 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8928 1.0278 0.0000 4 6 2.0404 -0.7215 -1.2516 5 6 3.5646 -0.5543 -1.3333 6 1 3.8090 0.4674 -1.6239 7 6 4.1409 -1.5357 -2.3559 8 9 3.7127 -2.8322 -2.0507 9 9 3.6984 -1.1879 -3.6368 10 7 4.1185 -0.8394 -0.0033 11 7 5.4507 -1.0957 0.3213 12 6 5.5473 -1.2962 1.6066 13 6 4.2529 -1.1848 2.1711 14 6 3.9004 -1.3409 3.5866 15 8 2.8156 -0.9632 3.9888 16 7 4.7778 -1.9027 4.4415 17 6 4.4626 -2.0167 5.7700 18 1 3.4292 -2.0002 6.0832 19 6 5.4723 -2.1593 6.7138 20 7 6.5938 -2.7636 6.3903 21 14 5.2358 -1.4921 8.4425 22 1 4.0621 -2.1499 9.0707 23 1 6.4500 -1.7705 9.2508 24 1 5.0073 -0.0261 8.3804 25 6 6.0687 -2.3914 3.9505 26 6 7.0862 -1.3407 4.1154 27 7 7.8714 -0.5297 4.2428 28 6 3.3818 -0.8934 1.1284 29 7 2.0198 -0.6927 1.2015 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5132 0.8903 32 1 -0.3633 0.5144 -0.8896 33 1 1.5774 -0.2873 -2.1378 34 1 1.7920 -1.7810 -1.1894 35 1 5.2297 -1.4958 -2.3243 36 1 6.4570 -1.5130 2.1469 37 1 7.2988 -2.8628 7.0491 38 1 6.3627 -3.2743 4.5180 39 1 5.9815 -2.6503 2.8952 40 1 1.5327 -1.5653 1.3403 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136559987.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:07 Heat of formation + Delta-G solvation = 17.420807 kcal Electronic energy + Delta-G solvation = -30359.302060 eV Core-core repulsion = 25848.519838 eV Total energy + Delta-G solvation = -4510.782222 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.38892 -47.35587 -41.72208 -38.73705 -37.66915 -35.89043 -34.48471 -34.16812 -32.18096 -31.65631 -29.49589 -28.10829 -27.49178 -26.97855 -24.92996 -23.07418 -22.13551 -21.63787 -20.15913 -19.16396 -18.06421 -17.86737 -17.81790 -17.21690 -16.59314 -16.43167 -16.13209 -15.69826 -15.13216 -14.74606 -14.59480 -14.36283 -14.08911 -14.08471 -13.83755 -13.71099 -13.46218 -13.34685 -12.86088 -12.74482 -12.41360 -12.33406 -12.22044 -11.95364 -11.92947 -11.74886 -11.52513 -11.41071 -11.20984 -11.11821 -10.88602 -10.50716 -10.39955 -10.27492 -9.87575 -9.02957 -8.91953 -8.53453 -8.03291 -7.88961 -6.49894 -3.90781 1.69916 2.05408 2.54565 3.12588 3.20133 3.28797 3.34893 3.53337 3.61279 3.67467 3.76698 3.80788 4.13169 4.17818 4.29478 4.39874 4.52354 4.62143 4.70048 4.81303 4.87877 4.96057 5.07136 5.19463 5.25259 5.28128 5.36744 5.50752 5.57348 5.72009 5.86083 5.92230 6.09891 6.28949 6.64999 6.85254 6.88654 7.28303 7.51322 7.72739 8.05087 8.40616 8.56464 9.07519 9.27213 9.88161 10.49221 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017975 B = 0.003658 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.316615 B = 7653.523171 C = 8708.834329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.075 3.925 3 H 0.095 0.905 4 C -0.172 4.172 5 C 0.120 3.880 6 H 0.120 0.880 7 C 0.264 3.736 8 F -0.194 7.194 9 F -0.196 7.196 10 N -0.398 5.398 11 N -0.303 5.303 12 C 0.073 3.927 13 C -0.254 4.254 14 C 0.534 3.466 15 O -0.561 6.561 16 N -0.439 5.439 17 C -0.315 4.315 18 H 0.110 0.890 19 C 0.046 3.954 20 N -0.867 5.867 21 Si 0.913 3.087 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.177 3.823 26 C 0.234 3.766 27 N -0.472 5.472 28 C 0.320 3.680 29 N -0.570 5.570 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.129 0.871 36 H 0.203 0.797 37 H 0.274 0.726 38 H 0.163 0.837 39 H 0.094 0.906 40 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.242 0.190 -17.775 19.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.034 4.034 3 H 0.114 0.886 4 C -0.212 4.212 5 C 0.016 3.984 6 H 0.137 0.863 7 C 0.210 3.790 8 F -0.175 7.175 9 F -0.178 7.178 10 N -0.186 5.186 11 N -0.123 5.123 12 C -0.113 4.113 13 C -0.271 4.271 14 C 0.324 3.676 15 O -0.444 6.444 16 N -0.159 5.159 17 C -0.441 4.441 18 H 0.128 0.872 19 C -0.159 4.159 20 N -0.506 5.506 21 Si 0.739 3.261 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.199 1.199 25 C 0.050 3.950 26 C -0.084 4.084 27 N -0.152 5.152 28 C 0.095 3.905 29 N -0.204 5.204 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.108 0.892 35 H 0.146 0.854 36 H 0.219 0.781 37 H 0.085 0.915 38 H 0.180 0.820 39 H 0.111 0.889 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -5.925 2.101 -18.103 19.163 hybrid contribution -0.461 -0.680 0.903 1.221 sum -6.386 1.421 -17.200 18.402 Atomic orbital electron populations 1.21828 0.92142 1.02989 1.03416 1.21872 0.97170 0.98767 0.85589 0.88649 1.22868 0.91751 1.04168 1.02404 1.22456 0.94863 1.00438 0.80676 0.86267 1.21979 0.99984 0.78599 0.78486 1.93008 1.91977 1.39645 1.92890 1.93003 1.91923 1.92020 1.40837 1.48685 1.06715 1.58325 1.04863 1.76884 0.93722 1.25102 1.16607 1.24918 0.98720 0.96877 0.90833 1.20001 0.91562 1.20614 0.94914 1.16684 0.85801 0.81957 0.83207 1.90671 1.22938 1.52852 1.77912 1.43335 1.12521 1.51954 1.08105 1.19494 0.95011 1.50105 0.79496 0.87192 1.25223 0.94705 0.95341 1.00605 1.69787 1.08047 1.35939 1.36786 0.86211 0.77755 0.80463 0.81704 1.19584 1.21102 1.19912 1.20021 0.80306 0.94177 1.00544 1.29818 0.93727 0.93715 0.91120 1.80965 1.12103 1.11285 1.10801 1.19370 0.88608 0.96747 0.85754 1.57356 0.99048 1.27802 1.36223 0.91997 0.90483 0.91222 0.87470 0.89230 0.85412 0.78144 0.91538 0.82016 0.88885 0.79705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.35 37.16 0.35 -0.73 16 2 C 0.08 0.73 3.10 -67.50 -0.21 0.52 16 3 H 0.10 0.97 8.13 -51.93 -0.42 0.54 16 4 C -0.17 -1.42 4.66 -26.33 -0.12 -1.54 16 5 C 0.12 1.20 3.44 -67.44 -0.23 0.97 16 6 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 7 C 0.26 2.56 4.91 37.15 0.18 2.74 16 8 F -0.19 -2.31 16.37 2.25 0.04 -2.27 16 9 F -0.20 -1.82 17.22 2.25 0.04 -1.78 16 10 N -0.40 -5.64 3.76 -53.10 -0.20 -5.84 16 11 N -0.30 -4.85 12.12 30.94 0.38 -4.47 16 12 C 0.07 1.29 9.54 -16.83 -0.16 1.13 16 13 C -0.25 -4.92 5.88 -104.91 -0.62 -5.54 16 14 C 0.53 12.40 7.59 -12.84 -0.10 12.31 16 15 O -0.56 -14.52 16.16 5.18 0.08 -14.43 16 16 N -0.44 -10.36 2.59 -119.40 -0.31 -10.67 16 17 C -0.31 -8.11 9.21 -14.98 -0.14 -8.24 16 18 H 0.11 2.96 7.52 -52.49 -0.39 2.57 16 19 C 0.05 1.14 5.10 -17.46 -0.09 1.05 16 20 N -0.87 -21.10 9.17 55.50 0.51 -20.59 16 21 Si 0.91 20.44 29.65 -169.99 -5.04 15.40 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 25 C 0.18 3.60 4.74 -6.83 -0.03 3.57 16 26 C 0.23 5.13 11.91 -20.76 -0.25 4.88 16 27 N -0.47 -11.00 18.54 42.15 0.78 -10.21 16 28 C 0.32 5.23 7.07 -153.78 -1.09 4.14 16 29 N -0.57 -8.02 6.00 -53.13 -0.32 -8.34 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.80 7.29 -51.93 -0.38 0.42 16 35 H 0.13 1.16 7.99 -51.93 -0.42 0.74 16 36 H 0.20 3.44 3.65 -52.49 -0.19 3.25 16 37 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 38 H 0.16 3.43 5.88 -51.93 -0.31 3.13 16 39 H 0.09 1.59 4.35 -51.93 -0.23 1.37 16 40 H 0.37 4.90 8.62 -39.29 -0.34 4.56 16 LS Contribution 341.84 15.07 5.15 5.15 Total: -1.00 -31.22 341.84 -5.31 -36.54 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -3.92 Total: 6.29 kcal Atomic # 6 Polarization: 17.74 SS G_CDS: -2.50 Total: 15.23 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: 0.84 Total: -60.13 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.08 Total: -14.43 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.08 Total: -4.05 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.04 Total: 15.40 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.22 -5.31 -36.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136559987.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.957 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds