Wall clock time and date at job start Tue Mar 31 2020 23:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.49673 * 2 1 4 4 C 1.53191 * 109.49636 * 120.06281 * 2 1 3 5 5 N 1.46931 * 108.77684 * 65.34769 * 4 2 1 6 6 S 1.65595 * 120.63015 * 233.58808 * 5 4 2 7 7 O 1.42107 * 106.40277 * 203.53743 * 6 5 4 8 8 O 1.42100 * 106.40298 * 336.45601 * 6 5 4 9 9 C 1.76203 * 107.22072 * 89.99812 * 6 5 4 10 10 H 1.08000 * 119.99874 * 0.02562 * 9 6 5 11 11 C 1.37872 * 119.99822 * 179.97438 * 9 6 5 12 12 N 1.31515 * 120.00650 * 0.02562 * 11 9 6 13 13 Si 1.86807 * 119.99828 * 180.02562 * 11 9 6 14 14 H 1.48498 * 109.47301 * 59.99908 * 13 11 9 15 15 H 1.48498 * 109.46929 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46922 * 299.99932 * 13 11 9 17 17 C 1.46928 * 118.73635 * 53.85731 * 5 4 2 18 18 C 1.53623 * 108.54483 * 306.09856 * 17 5 4 19 19 C 1.53037 * 109.24484 * 54.85429 * 18 17 5 20 20 C 1.53001 * 109.44763 * 58.52642 * 19 18 17 21 21 C 1.50701 * 109.46216 * 178.49274 * 19 18 17 22 22 C 1.38292 * 119.96838 * 3.42459 * 21 19 18 23 23 C 1.38244 * 120.10395 * 179.72713 * 22 21 19 24 24 C 1.38167 * 120.06029 * 0.54901 * 23 22 21 25 25 C 1.38706 * 119.94203 * 359.72729 * 24 23 22 26 26 O 1.35897 * 120.05684 * 179.97438 * 25 24 23 27 27 C 1.38118 * 119.97028 * 183.70065 * 21 19 18 28 28 H 1.08994 * 109.46521 * 297.40748 * 1 2 3 29 29 H 1.08996 * 109.46897 * 57.40648 * 1 2 3 30 30 H 1.08996 * 109.47040 * 177.40719 * 1 2 3 31 31 H 1.09005 * 109.58826 * 305.56360 * 4 2 1 32 32 H 1.08996 * 109.70469 * 185.20274 * 4 2 1 33 33 H 0.96995 * 120.00348 * 180.02562 * 12 11 9 34 34 H 1.09005 * 109.58515 * 65.93235 * 17 5 4 35 35 H 1.09002 * 109.58528 * 186.35051 * 17 5 4 36 36 H 1.09003 * 109.62891 * 294.86144 * 18 17 5 37 37 H 1.08998 * 109.43412 * 174.72588 * 18 17 5 38 38 H 1.09006 * 109.46834 * 299.93927 * 20 19 18 39 39 H 1.08998 * 109.47279 * 59.93442 * 20 19 18 40 40 H 1.08997 * 109.47285 * 179.97438 * 20 19 18 41 41 H 1.07992 * 119.94550 * 359.97438 * 22 21 19 42 42 H 1.08000 * 119.96678 * 180.29839 * 23 22 21 43 43 H 1.07993 * 120.02906 * 179.70527 * 24 23 22 44 44 H 0.96697 * 114.00487 * 270.02266 * 26 25 24 45 45 H 1.07994 * 120.03315 * 359.97438 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 1.2498 5 7 1.6522 -2.1380 1.1699 6 16 0.8206 -2.8556 2.4092 7 8 1.0768 -4.2498 2.3100 8 8 1.1030 -2.0946 3.5755 9 6 -0.8967 -2.6405 2.0784 10 1 -1.2137 -2.1152 1.1896 11 6 -1.8356 -3.1437 2.9537 12 7 -1.4495 -3.7838 4.0358 13 14 -3.6562 -2.9163 2.6026 14 1 -3.9943 -3.5572 1.3065 15 1 -4.4517 -3.5439 3.6882 16 1 -3.9699 -1.4664 2.5346 17 6 2.0202 -2.9053 -0.0278 18 6 1.5044 -2.1559 -1.2657 19 6 2.0415 -0.7230 -1.2481 20 6 3.5711 -0.7526 -1.2292 21 6 1.5686 0.0056 -2.4796 22 6 0.7155 -0.6221 -3.3688 23 6 0.2755 0.0457 -4.4965 24 6 0.6962 1.3383 -4.7436 25 6 1.5563 1.9680 -3.8561 26 8 1.9720 3.2392 -4.0972 27 6 1.9921 1.2977 -2.7220 28 1 -0.3632 0.4730 0.9123 29 1 -0.3633 0.5536 -0.8658 30 1 -0.3633 -1.0266 -0.0465 31 1 1.6003 -0.2728 2.1390 32 1 3.1273 -0.6456 1.3011 33 1 -2.1101 -4.1381 4.6513 34 1 3.1047 -3.0016 -0.0812 35 1 1.5653 -3.8948 0.0181 36 1 0.4146 -2.1362 -1.2541 37 1 1.8498 -2.6629 -2.1667 38 1 3.9133 -1.2792 -0.3383 39 1 3.9356 -1.2676 -2.1181 40 1 3.9541 0.2678 -1.2172 41 1 0.3895 -1.6342 -3.1799 42 1 -0.3945 -0.4450 -5.1869 43 1 0.3559 1.8578 -5.6271 44 1 2.7851 3.2953 -4.6175 45 1 2.6615 1.7861 -2.0294 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192961472.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:49 Heat of formation + Delta-G solvation = -138.758325 kcal Electronic energy + Delta-G solvation = -29146.172354 eV Core-core repulsion = 25253.705676 eV Total energy + Delta-G solvation = -3892.466678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.62590 -39.80167 -37.48630 -37.43466 -36.11069 -35.23579 -34.74359 -33.08909 -31.34190 -30.27739 -29.68485 -28.21468 -26.39225 -25.21497 -24.08303 -22.71535 -22.37421 -20.83626 -19.68262 -19.27101 -18.47010 -17.93139 -17.39057 -17.03526 -16.62169 -16.34211 -16.12438 -15.94505 -15.70700 -15.53011 -15.20373 -15.07202 -14.71856 -14.26305 -14.03737 -13.84342 -13.36832 -13.23493 -13.04197 -13.02686 -12.98999 -12.81921 -12.68832 -12.61297 -12.49147 -12.39157 -12.30971 -12.16222 -12.09397 -11.93765 -11.83857 -11.33897 -11.21990 -11.17075 -10.99748 -10.80151 -9.66200 -9.61804 -9.41657 -8.70688 -7.42833 0.35068 0.40764 0.48615 1.33096 1.34706 1.47056 2.20694 2.60892 2.78444 2.87741 3.33589 3.65748 3.71389 3.81980 3.91711 4.13524 4.16416 4.20242 4.31505 4.34050 4.41698 4.44371 4.47823 4.60135 4.70931 4.72992 4.78246 4.84862 4.93758 4.97280 4.99985 5.06803 5.07860 5.11209 5.19226 5.23164 5.27696 5.34216 5.44072 5.52719 5.55873 5.58476 5.64129 5.81718 6.00087 6.01314 6.07059 6.83088 6.93213 8.23634 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015827 B = 0.004013 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.744862 B = 6974.990984 C = 7811.575007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.081 4.081 3 H 0.094 0.906 4 C 0.123 3.877 5 N -1.002 6.002 6 S 2.716 3.284 7 O -1.044 7.044 8 O -1.045 7.045 9 C -1.032 5.032 10 H 0.124 0.876 11 C 0.074 3.926 12 N -0.897 5.897 13 Si 0.981 3.019 14 H -0.249 1.249 15 H -0.266 1.266 16 H -0.253 1.253 17 C 0.118 3.882 18 C -0.124 4.124 19 C -0.007 4.007 20 C -0.141 4.141 21 C -0.043 4.043 22 C -0.141 4.141 23 C -0.103 4.103 24 C -0.162 4.162 25 C 0.097 3.903 26 O -0.513 6.513 27 C -0.149 4.149 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.297 0.703 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.134 0.866 42 H 0.143 0.857 43 H 0.137 0.863 44 H 0.408 0.592 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.739 10.081 -19.773 23.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.101 4.101 3 H 0.113 0.887 4 C -0.002 4.002 5 N -0.840 5.840 6 S 2.818 3.182 7 O -1.034 7.034 8 O -1.035 7.035 9 C -1.165 5.165 10 H 0.142 0.858 11 C -0.139 4.139 12 N -0.529 5.529 13 Si 0.800 3.200 14 H -0.173 1.173 15 H -0.190 1.190 16 H -0.177 1.177 17 C -0.007 4.007 18 C -0.162 4.162 19 C -0.008 4.008 20 C -0.198 4.198 21 C -0.043 4.043 22 C -0.159 4.159 23 C -0.121 4.121 24 C -0.181 4.181 25 C 0.053 3.947 26 O -0.326 6.326 27 C -0.167 4.167 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.152 0.848 42 H 0.160 0.840 43 H 0.155 0.845 44 H 0.266 0.734 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.684 9.693 -18.535 21.958 hybrid contribution -1.011 -0.019 -0.077 1.014 sum 5.672 9.673 -18.612 21.729 Atomic orbital electron populations 1.21981 0.95784 1.02267 1.01059 1.21465 0.95771 0.99379 0.93502 0.88740 1.21549 1.00643 0.79626 0.98410 1.57583 1.72760 1.19627 1.34044 1.00041 0.75617 0.71286 0.71214 1.93288 1.87829 1.35421 1.86867 1.93286 1.87459 1.73133 1.49630 1.31017 1.16971 1.49734 1.18818 0.85831 1.25918 1.07184 0.89066 0.91684 1.69995 1.39677 1.31615 1.11643 0.85285 0.74815 0.80227 0.79657 1.17290 1.19043 1.17654 1.21615 1.01050 0.94242 0.83816 1.22204 1.01360 0.95024 0.97661 1.19380 0.96614 0.93780 0.90984 1.21985 0.92305 1.02838 1.02674 1.19657 0.96038 0.93587 0.95061 1.21435 0.98272 1.01340 0.94825 1.21265 0.99213 0.94200 0.97449 1.21582 1.00381 0.95617 1.00498 1.18565 0.97363 0.84238 0.94525 1.84779 1.48059 1.22849 1.76865 1.21318 1.02420 0.94434 0.98519 0.93800 0.92172 0.92453 0.91433 0.89626 0.89319 0.89692 0.91091 0.91440 0.88404 0.91877 0.91380 0.91365 0.84843 0.83964 0.84522 0.73360 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.74 8.44 71.98 0.61 -4.13 16 2 C -0.08 -2.15 2.13 -10.71 -0.02 -2.18 16 3 H 0.09 2.14 7.56 -2.39 -0.02 2.12 16 4 C 0.12 4.02 5.30 86.36 0.46 4.48 16 5 N -1.00 -39.02 2.77 -512.26 -1.42 -40.43 16 6 S 2.72 146.43 4.97 -56.49 -0.28 146.15 16 7 O -1.04 -62.46 16.72 -128.00 -2.14 -64.61 16 8 O -1.04 -62.93 16.73 -128.00 -2.14 -65.07 16 9 C -1.03 -56.16 9.73 67.73 0.66 -55.50 16 10 H 0.12 6.04 5.74 -2.91 -0.02 6.02 16 11 C 0.07 4.12 5.46 84.65 0.46 4.58 16 12 N -0.90 -54.06 13.19 21.45 0.28 -53.78 16 13 Si 0.98 41.58 29.54 68.60 2.03 43.61 16 14 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 15 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 16 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 17 C 0.12 3.72 5.94 86.51 0.51 4.23 16 18 C -0.12 -3.06 3.24 30.82 0.10 -2.96 16 19 C -0.01 -0.16 0.38 -52.90 -0.02 -0.18 16 20 C -0.14 -2.57 7.49 71.98 0.54 -2.03 16 21 C -0.04 -0.89 3.61 -19.88 -0.07 -0.96 16 22 C -0.14 -2.79 8.98 22.28 0.20 -2.59 16 23 C -0.10 -1.81 10.04 22.25 0.22 -1.59 16 24 C -0.16 -2.87 9.99 22.36 0.22 -2.65 16 25 C 0.10 1.85 6.71 22.51 0.15 2.00 16 26 O -0.51 -8.57 13.50 -92.39 -1.25 -9.82 16 27 C -0.15 -2.91 8.65 22.37 0.19 -2.72 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 1.67 7.36 -2.39 -0.02 1.66 16 30 H 0.06 1.96 3.86 -2.39 -0.01 1.95 16 31 H 0.07 2.53 7.13 -2.38 -0.02 2.51 16 32 H 0.09 2.34 6.70 -2.39 -0.02 2.33 16 33 H 0.30 16.17 8.31 -92.71 -0.77 15.40 16 34 H 0.08 2.25 6.69 -2.38 -0.02 2.24 16 35 H 0.07 2.53 7.12 -2.39 -0.02 2.51 16 36 H 0.07 1.85 5.58 -2.39 -0.01 1.83 16 37 H 0.10 1.88 7.59 -2.39 -0.02 1.86 16 38 H 0.06 1.25 4.97 -2.38 -0.01 1.24 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.07 1.07 7.19 -2.39 -0.02 1.05 16 41 H 0.13 2.51 5.90 -2.91 -0.02 2.50 16 42 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 43 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 44 H 0.41 2.70 9.06 -74.06 -0.67 2.03 16 45 H 0.13 2.36 7.09 -2.91 -0.02 2.34 16 Total: -1.00 -78.52 355.06 -0.34 -78.86 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: 0.37 Total: 27.28 kcal Atomic # 6 Polarization: -66.41 SS G_CDS: 4.21 Total: -62.20 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -1.13 Total: -94.21 kcal Atomic # 8 Polarization: -133.96 SS G_CDS: -5.53 Total: -139.49 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Atomic # 16 Polarization: 146.43 SS G_CDS: -0.28 Total: 146.15 kcal Total: -78.52 -0.34 -78.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961472.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.897 kcal (2) G-P(sol) polarization free energy of solvation -78.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds