Wall clock time and date at job start Tue Mar 31 2020 23:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47226 * 2 1 4 4 N 1.46502 * 109.46954 * 119.99917 * 2 1 3 5 5 C 1.39781 * 120.00203 * 274.99719 * 4 2 1 6 6 C 1.38953 * 120.00232 * 0.28154 * 5 4 2 7 7 C 1.38020 * 119.98851 * 180.25377 * 6 5 4 8 8 C 1.38889 * 120.00747 * 359.48928 * 7 6 5 9 9 O 1.35805 * 119.99439 * 180.25657 * 8 7 6 10 10 C 1.34809 * 116.99878 * 354.46043 * 9 8 7 11 11 H 1.08004 * 119.99808 * 5.04935 * 10 9 8 12 12 C 1.38619 * 119.99794 * 185.05711 * 10 9 8 13 13 N 1.31579 * 120.00231 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99847 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46950 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47249 * 119.99810 * 14 12 10 17 17 H 1.48503 * 109.47022 * 240.00064 * 14 12 10 18 18 C 1.38904 * 120.01578 * 0.23022 * 8 7 6 19 19 C 1.38009 * 120.00109 * 0.02847 * 18 8 7 20 20 C 1.53001 * 109.47156 * 240.00023 * 2 1 3 21 21 C 1.52587 * 109.24321 * 181.15637 * 20 2 1 22 22 C 1.53036 * 109.98703 * 169.71188 * 21 20 2 23 23 S 1.81670 * 108.99730 * 63.64673 * 22 21 20 24 24 O 1.42100 * 108.66187 * 191.37144 * 23 22 21 25 25 O 1.42105 * 108.66301 * 60.03268 * 23 22 21 26 26 C 1.81670 * 101.30887 * 305.70130 * 23 22 21 27 27 C 1.52580 * 109.24271 * 59.99927 * 20 2 1 28 28 H 1.08998 * 109.46747 * 300.00364 * 1 2 3 29 29 H 1.08997 * 109.46906 * 59.99918 * 1 2 3 30 30 H 1.08998 * 109.46799 * 179.97438 * 1 2 3 31 31 H 0.96997 * 119.99760 * 95.00223 * 4 2 1 32 32 H 1.07995 * 120.00933 * 0.02562 * 6 5 4 33 33 H 1.08000 * 119.99493 * 179.77004 * 7 6 5 34 34 H 0.96996 * 120.00145 * 180.02562 * 13 12 10 35 35 H 1.07995 * 119.99923 * 180.02562 * 18 8 7 36 36 H 1.07998 * 120.00362 * 180.02562 * 19 18 8 37 37 H 1.09003 * 109.23736 * 300.55910 * 20 2 1 38 38 H 1.09001 * 109.38224 * 289.87602 * 21 20 2 39 39 H 1.09006 * 109.38352 * 49.55560 * 21 20 2 40 40 H 1.08998 * 109.55250 * 303.79222 * 22 21 20 41 41 H 1.08998 * 109.62805 * 183.55018 * 22 21 20 42 42 H 1.09000 * 109.54994 * 294.44425 * 26 23 22 43 43 H 1.08997 * 109.54832 * 174.15317 * 26 23 22 44 44 H 1.08997 * 109.39075 * 310.44495 * 27 20 2 45 45 H 1.08998 * 109.38855 * 70.12986 * 27 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1519 0.0067 2.4003 6 6 1.8160 1.3535 2.4642 7 6 1.9529 2.0430 3.6519 8 6 2.4163 1.3883 4.7858 9 8 2.5460 2.0658 5.9556 10 6 2.3187 3.3941 5.9220 11 1 1.9681 3.8591 5.0124 12 6 2.5350 4.1632 7.0548 13 7 2.9617 3.5966 8.1630 14 14 2.2206 6.0040 7.0081 15 1 1.7496 6.3914 5.6541 16 1 1.1846 6.3549 8.0123 17 1 3.4784 6.7290 7.3203 18 6 2.7467 0.0406 4.7236 19 6 2.6150 -0.6481 3.5349 20 6 2.0401 -0.7212 -1.2493 21 6 3.5656 -0.7434 -1.2295 22 6 4.0895 -1.6737 -2.3260 23 16 3.6055 -1.0094 -3.9462 24 8 3.8575 -1.9970 -4.9363 25 8 4.1711 0.2859 -4.0939 26 6 1.8087 -0.8390 -3.7391 27 6 1.5286 0.0021 -2.4915 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.2490 -1.6317 1.1526 32 1 1.4513 1.8616 1.5838 33 1 1.6954 3.0907 3.7008 34 1 3.1128 4.1347 8.9558 35 1 3.1066 -0.4684 5.6055 36 1 2.8715 -1.6961 3.4867 37 1 1.6664 -1.7452 -1.2504 38 1 3.9443 0.2646 -1.3987 39 1 3.9098 -1.0992 -0.2583 40 1 3.6611 -2.6675 -2.1966 41 1 5.1761 -1.7343 -2.2665 42 1 1.3599 -1.8254 -3.6223 43 1 1.3859 -0.3456 -4.6142 44 1 0.4549 0.1652 -2.3989 45 1 2.0325 0.9642 -2.5832 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321070596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:54 Heat of formation + Delta-G solvation = -99.957592 kcal Electronic energy + Delta-G solvation = -27025.276600 eV Core-core repulsion = 23134.492447 eV Total energy + Delta-G solvation = -3890.784152 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.82648 -39.81073 -38.30029 -37.85910 -37.03325 -35.45127 -34.08620 -32.91656 -31.91779 -31.50095 -28.50891 -27.97844 -27.02676 -24.52654 -23.90806 -23.17902 -22.00253 -21.03802 -19.79455 -19.75645 -18.95302 -17.95019 -17.38632 -17.26524 -16.96253 -16.59457 -16.22400 -15.76956 -15.55572 -15.39626 -15.30278 -14.88371 -14.68720 -14.64334 -14.27741 -14.08581 -13.88825 -13.57043 -13.46685 -13.38704 -13.20167 -13.04891 -12.99892 -12.93424 -12.72644 -12.59110 -12.41648 -12.17784 -12.07954 -12.06811 -11.94471 -11.56046 -11.38719 -11.05088 -10.92411 -10.78362 -10.13043 -9.72915 -8.38644 -7.87162 -6.01671 -0.86815 0.63220 0.97863 1.36871 1.45780 1.54768 1.81253 2.22907 2.64613 2.77959 2.93650 3.00500 3.28740 3.59729 3.63177 3.70468 3.73775 3.84238 4.10370 4.13439 4.20575 4.22578 4.35830 4.41359 4.53063 4.60418 4.63817 4.75331 4.78902 4.82829 4.88878 4.94037 5.01597 5.05890 5.09838 5.17003 5.25590 5.30043 5.38068 5.52536 5.57244 5.60417 5.83236 6.03049 6.13537 6.68002 7.07391 7.16056 7.95782 8.86221 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021305 B = 0.002160 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.910371 B =12959.117018 C =13266.667244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.156 3.844 3 H 0.070 0.930 4 N -0.736 5.736 5 C 0.160 3.840 6 C -0.148 4.148 7 C -0.196 4.196 8 C 0.059 3.941 9 O -0.245 6.245 10 C -0.402 4.402 11 H 0.097 0.903 12 C -0.030 4.030 13 N -0.927 5.927 14 Si 1.016 2.984 15 H -0.252 1.252 16 H -0.270 1.270 17 H -0.271 1.271 18 C -0.157 4.157 19 C -0.141 4.141 20 C -0.107 4.107 21 C -0.114 4.114 22 C -0.586 4.586 23 S 2.405 3.595 24 O -0.991 6.991 25 O -0.987 6.987 26 C -0.579 4.579 27 C -0.115 4.115 28 H 0.038 0.962 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.406 0.594 32 H 0.135 0.865 33 H 0.113 0.887 34 H 0.269 0.731 35 H 0.111 0.889 36 H 0.149 0.851 37 H 0.116 0.884 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.163 0.837 41 H 0.138 0.862 42 H 0.165 0.835 43 H 0.149 0.851 44 H 0.115 0.885 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.020 -12.312 -25.597 28.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.050 3.950 3 H 0.088 0.912 4 N -0.371 5.371 5 C 0.059 3.941 6 C -0.171 4.171 7 C -0.216 4.216 8 C 0.010 3.990 9 O -0.153 6.153 10 C -0.479 4.479 11 H 0.114 0.886 12 C -0.226 4.226 13 N -0.568 5.568 14 Si 0.836 3.164 15 H -0.175 1.175 16 H -0.195 1.195 17 H -0.196 1.196 18 C -0.176 4.176 19 C -0.163 4.163 20 C -0.126 4.126 21 C -0.152 4.152 22 C -0.717 4.717 23 S 2.594 3.406 24 O -0.988 6.988 25 O -0.984 6.984 26 C -0.711 4.711 27 C -0.154 4.154 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.242 0.758 32 H 0.153 0.847 33 H 0.131 0.869 34 H 0.078 0.922 35 H 0.129 0.871 36 H 0.166 0.834 37 H 0.134 0.866 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.181 0.819 41 H 0.156 0.844 42 H 0.183 0.817 43 H 0.167 0.833 44 H 0.133 0.867 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.412 -12.013 -26.100 29.069 hybrid contribution -0.161 0.484 1.238 1.339 sum -4.574 -11.528 -24.862 27.784 Atomic orbital electron populations 1.22393 0.95423 1.03009 1.02244 1.20812 0.93837 0.96673 0.83638 0.91226 1.44322 1.75088 1.12048 1.05606 1.17437 0.98420 0.91083 0.87190 1.20537 1.05923 0.93597 0.97007 1.21052 1.06523 1.00540 0.93498 1.19769 0.99114 0.93353 0.86812 1.83931 1.81178 1.21831 1.28350 1.21762 1.45455 0.80851 0.99855 0.88554 1.26507 0.96614 1.05507 0.93942 1.70206 1.46007 1.38211 1.02328 0.84566 0.78351 0.74152 0.79371 1.17540 1.19503 1.19605 1.20246 1.06401 0.91681 0.99311 1.20434 1.05261 1.00197 0.90447 1.21580 0.94525 1.02607 0.93887 1.21400 0.95298 0.99221 0.99316 1.30074 1.12479 1.11943 1.17237 1.08066 0.80355 0.74269 0.77956 1.93539 1.85322 1.62007 1.57962 1.93541 1.77497 1.40933 1.86420 1.30019 1.21618 1.11824 1.07632 1.21499 1.05976 0.98294 0.89586 0.94235 0.89710 0.91339 0.75802 0.84721 0.86901 0.92208 0.87123 0.83373 0.86616 0.90908 0.88727 0.81872 0.84406 0.81708 0.83307 0.86713 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 9.08 71.98 0.65 -1.42 16 2 C 0.16 2.01 1.84 44.99 0.08 2.09 16 3 H 0.07 1.11 6.49 -2.39 -0.02 1.10 16 4 N -0.74 -12.52 4.36 -318.78 -1.39 -13.91 16 5 C 0.16 4.45 6.64 38.22 0.25 4.71 16 6 C -0.15 -4.88 8.83 22.39 0.20 -4.68 16 7 C -0.20 -8.51 9.16 22.37 0.20 -8.31 16 8 C 0.06 2.94 6.65 22.59 0.15 3.09 16 9 O -0.24 -15.01 9.76 -23.14 -0.23 -15.24 16 10 C -0.40 -23.93 9.48 67.91 0.64 -23.28 16 11 H 0.10 5.28 5.20 -2.91 -0.02 5.26 16 12 C -0.03 -1.73 5.49 84.82 0.47 -1.27 16 13 N -0.93 -58.29 13.67 21.61 0.30 -58.00 16 14 Si 1.02 43.95 29.55 68.60 2.03 45.98 16 15 H -0.25 -10.04 7.11 99.48 0.71 -9.34 16 16 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 18 C -0.16 -6.54 9.98 22.37 0.22 -6.32 16 19 C -0.14 -4.38 9.89 22.39 0.22 -4.16 16 20 C -0.11 -0.71 1.58 -11.07 -0.02 -0.73 16 21 C -0.11 -1.07 4.98 30.47 0.15 -0.92 16 22 C -0.59 -3.96 6.35 71.99 0.46 -3.50 16 23 S 2.41 28.54 5.31 -56.49 -0.30 28.24 16 24 O -0.99 -19.52 18.10 -127.40 -2.31 -21.82 16 25 O -0.99 -21.01 17.94 -127.40 -2.29 -23.30 16 26 C -0.58 -2.25 6.35 72.00 0.46 -1.80 16 27 C -0.11 -0.63 4.91 30.47 0.15 -0.48 16 28 H 0.04 0.71 7.67 -2.39 -0.02 0.69 16 29 H 0.08 0.65 6.19 -2.39 -0.01 0.64 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.41 4.92 8.35 -92.71 -0.77 4.14 16 32 H 0.14 3.66 6.08 -2.91 -0.02 3.64 16 33 H 0.11 5.07 5.63 -2.91 -0.02 5.05 16 34 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 35 H 0.11 4.62 8.06 -2.91 -0.02 4.59 16 36 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 37 H 0.12 0.17 8.09 -2.39 -0.02 0.15 16 38 H 0.07 0.91 8.01 -2.39 -0.02 0.89 16 39 H 0.09 0.98 7.06 -2.38 -0.02 0.96 16 40 H 0.16 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.16 -0.31 8.14 -2.39 -0.02 -0.33 16 43 H 0.15 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.11 0.30 5.89 -2.39 -0.01 0.29 16 45 H 0.08 0.63 8.01 -2.39 -0.02 0.61 16 Total: -1.00 -88.05 369.06 0.36 -87.69 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.25 Total: 17.32 kcal Atomic # 6 Polarization: -51.27 SS G_CDS: 4.30 Total: -46.97 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -1.09 Total: -71.90 kcal Atomic # 8 Polarization: -55.53 SS G_CDS: -4.82 Total: -60.35 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 28.54 SS G_CDS: -0.30 Total: 28.24 kcal Total: -88.05 0.36 -87.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321070596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.264 kcal (2) G-P(sol) polarization free energy of solvation -88.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds