Wall clock time and date at job start Tue Mar 31 2020 23:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46720 * 2 1 4 4 N 1.46497 * 109.47190 * 240.00211 * 2 1 3 5 5 C 1.39781 * 120.00262 * 84.99695 * 4 2 1 6 6 C 1.38955 * 120.00448 * 359.72726 * 5 4 2 7 7 C 1.38005 * 119.99770 * 180.29418 * 6 5 4 8 8 C 1.38905 * 120.00213 * 359.97438 * 7 6 5 9 9 O 1.35802 * 119.99100 * 179.97438 * 8 7 6 10 10 C 1.34813 * 116.99606 * 174.48632 * 9 8 7 11 11 H 1.08000 * 120.00384 * 5.05416 * 10 9 8 12 12 C 1.38618 * 119.99631 * 185.05858 * 10 9 8 13 13 N 1.31582 * 120.00163 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 120.00208 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.47202 * 90.00072 * 14 12 10 16 16 H 1.48501 * 109.46870 * 210.00196 * 14 12 10 17 17 H 1.48496 * 109.46791 * 329.99799 * 14 12 10 18 18 C 1.38894 * 120.01469 * 0.02562 * 8 7 6 19 19 C 1.38012 * 120.00390 * 0.02562 * 18 8 7 20 20 C 1.52995 * 109.46661 * 120.00048 * 2 1 3 21 21 C 1.52587 * 109.24330 * 60.56405 * 20 2 1 22 22 C 1.53052 * 109.97810 * 169.67481 * 21 20 2 23 23 S 1.81671 * 108.97312 * 63.70174 * 22 21 20 24 24 O 1.42096 * 108.66164 * 191.35734 * 23 22 21 25 25 O 1.42093 * 108.66229 * 60.00939 * 23 22 21 26 26 C 1.81672 * 101.30158 * 305.68456 * 23 22 21 27 27 C 1.52584 * 109.24722 * 299.44156 * 20 2 1 28 28 H 1.09000 * 109.47483 * 299.99811 * 1 2 3 29 29 H 1.09008 * 109.47321 * 59.99767 * 1 2 3 30 30 H 1.08996 * 109.47326 * 179.97438 * 1 2 3 31 31 H 0.96999 * 120.00019 * 265.00277 * 4 2 1 32 32 H 1.07999 * 120.00175 * 0.25329 * 6 5 4 33 33 H 1.07995 * 120.00276 * 179.97438 * 7 6 5 34 34 H 0.96998 * 120.00175 * 180.02562 * 13 12 10 35 35 H 1.08000 * 120.00027 * 179.97438 * 18 8 7 36 36 H 1.08007 * 120.00198 * 179.97438 * 19 18 8 37 37 H 1.09011 * 109.23484 * 179.97438 * 20 2 1 38 38 H 1.09005 * 109.37944 * 289.86307 * 21 20 2 39 39 H 1.09000 * 109.39151 * 49.55115 * 21 20 2 40 40 H 1.09001 * 109.57762 * 303.84257 * 22 21 20 41 41 H 1.09004 * 109.55104 * 183.54304 * 22 21 20 42 42 H 1.09006 * 109.54967 * 294.43516 * 26 23 22 43 43 H 1.09009 * 109.54849 * 174.15409 * 26 23 22 44 44 H 1.08998 * 109.38497 * 310.44723 * 27 20 2 45 45 H 1.08998 * 109.38216 * 70.12995 * 27 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1518 0.0067 -2.4003 6 6 1.8159 1.3536 -2.4642 7 6 1.9420 2.0404 -3.6546 8 6 2.4051 1.3855 -4.7886 9 8 2.5286 2.0614 -5.9600 10 6 3.0901 1.4001 -6.9919 11 1 3.3434 0.3551 -6.8900 12 6 3.3426 2.0613 -8.1837 13 7 3.8911 1.4161 -9.1907 14 14 2.9041 3.8686 -8.3602 15 1 4.0598 4.7016 -7.9412 16 1 2.5712 4.1610 -9.7776 17 1 1.7326 4.1797 -7.5024 18 6 2.7410 0.0392 -4.7250 19 6 2.6140 -0.6483 -3.5351 20 6 2.0399 -0.7213 1.2492 21 6 1.5400 -2.1629 1.2369 22 6 2.2417 -2.9691 2.3323 23 16 1.7895 -2.2826 3.9524 24 8 2.6367 -2.8530 4.9404 25 8 0.3799 -2.3723 4.1069 26 6 2.2408 -0.5360 3.7375 27 6 1.5399 0.0101 2.4916 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 2.2490 -1.6317 -1.1526 32 1 1.4556 1.8627 -1.5825 33 1 1.6806 3.0870 -3.7044 34 1 4.0681 1.8789 -10.0246 35 1 3.1006 -0.4698 -5.6070 36 1 2.8748 -1.6952 -3.4858 37 1 3.1300 -0.7195 1.2452 38 1 0.4640 -2.1741 1.4115 39 1 1.7521 -2.6112 0.2662 40 1 3.3215 -2.9055 2.1977 41 1 1.9266 -4.0111 2.2769 42 1 3.3206 -0.4506 3.6156 43 1 1.9250 0.0326 4.6124 44 1 1.7520 1.0748 2.3945 45 1 0.4641 -0.1355 2.5886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321070601.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:58 Heat of formation + Delta-G solvation = -96.217623 kcal Electronic energy + Delta-G solvation = -26949.387201 eV Core-core repulsion = 23058.765226 eV Total energy + Delta-G solvation = -3890.621975 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.92500 -39.97907 -38.38906 -37.88954 -37.03500 -35.40396 -34.28326 -32.78691 -32.12437 -31.40545 -28.78427 -27.79294 -26.83650 -24.70373 -24.15873 -23.40958 -22.12878 -20.56330 -19.71222 -19.49274 -19.07544 -18.13143 -17.63992 -17.30247 -16.88550 -16.64112 -16.20401 -15.96254 -15.58089 -15.41167 -15.17774 -15.05199 -14.77521 -14.46328 -14.28058 -14.03804 -13.91198 -13.89681 -13.81873 -13.26222 -13.20660 -13.07186 -13.00046 -12.97790 -12.86470 -12.61803 -12.46914 -12.37749 -12.03469 -11.93634 -11.73140 -11.65891 -11.28935 -11.16594 -10.95267 -10.84934 -10.24701 -9.75822 -8.42206 -7.93186 -6.09534 -0.86982 0.60305 0.92636 1.34150 1.38770 1.55417 1.80616 2.33577 2.62668 2.77592 2.86699 3.00456 3.20654 3.33174 3.57772 3.63869 3.73864 3.81562 4.07231 4.15079 4.16043 4.19386 4.39919 4.41471 4.50113 4.56273 4.61378 4.66132 4.79561 4.83293 4.92829 4.96061 4.99626 5.03153 5.10743 5.20433 5.27850 5.28984 5.36291 5.53051 5.56277 5.65610 5.87402 5.90188 6.17282 6.67012 6.93826 7.07525 7.75248 8.70173 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.036248 B = 0.001978 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.277826 B =14148.903891 C =14493.926383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.158 3.842 3 H 0.087 0.913 4 N -0.740 5.740 5 C 0.166 3.834 6 C -0.146 4.146 7 C -0.144 4.144 8 C 0.063 3.937 9 O -0.256 6.256 10 C -0.389 4.389 11 H 0.077 0.923 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.972 3.028 15 H -0.267 1.267 16 H -0.271 1.271 17 H -0.263 1.263 18 C -0.189 4.189 19 C -0.153 4.153 20 C -0.111 4.111 21 C -0.116 4.116 22 C -0.589 4.589 23 S 2.409 3.591 24 O -0.993 6.993 25 O -0.980 6.980 26 C -0.584 4.584 27 C -0.110 4.110 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.402 0.598 32 H 0.152 0.848 33 H 0.126 0.874 34 H 0.281 0.719 35 H 0.104 0.896 36 H 0.132 0.868 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.157 0.843 41 H 0.143 0.857 42 H 0.158 0.842 43 H 0.149 0.851 44 H 0.109 0.891 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.323 -4.435 28.500 29.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.053 3.947 3 H 0.105 0.895 4 N -0.375 5.375 5 C 0.065 3.935 6 C -0.168 4.168 7 C -0.163 4.163 8 C 0.015 3.985 9 O -0.165 6.165 10 C -0.466 4.466 11 H 0.095 0.905 12 C -0.195 4.195 13 N -0.574 5.574 14 Si 0.795 3.205 15 H -0.192 1.192 16 H -0.196 1.196 17 H -0.188 1.188 18 C -0.209 4.209 19 C -0.175 4.175 20 C -0.130 4.130 21 C -0.154 4.154 22 C -0.720 4.720 23 S 2.597 3.403 24 O -0.990 6.990 25 O -0.978 6.978 26 C -0.716 4.716 27 C -0.149 4.149 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.239 0.761 32 H 0.169 0.831 33 H 0.144 0.856 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.150 0.850 37 H 0.123 0.877 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.175 0.825 41 H 0.161 0.839 42 H 0.176 0.824 43 H 0.167 0.833 44 H 0.127 0.873 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.761 -4.542 29.162 29.895 hybrid contribution 0.555 0.082 -1.528 1.627 sum -4.206 -4.460 27.634 28.306 Atomic orbital electron populations 1.22488 0.96027 1.02880 1.02552 1.20865 0.93624 0.96928 0.83261 0.89535 1.44551 1.74865 1.12122 1.05951 1.17503 0.97673 0.91549 0.86762 1.20546 1.05990 0.93055 0.97195 1.20316 1.05091 1.00321 0.90590 1.19496 1.00377 0.91926 0.86720 1.83501 1.74285 1.41098 1.17645 1.20658 1.39036 0.95974 0.90888 0.90518 1.25265 0.96122 1.04286 0.93806 1.69753 1.44073 1.39129 1.04473 0.85190 0.79534 0.78199 0.77600 1.19210 1.19579 1.18759 1.21059 1.06323 0.94443 0.99044 1.20456 1.05829 1.00026 0.91201 1.21593 1.03019 0.94181 0.94183 1.21493 1.01041 0.93790 0.99083 1.30098 1.12688 1.11813 1.17417 1.07965 0.74403 0.80017 0.77913 1.93542 1.69682 1.77621 1.58197 1.93537 1.31201 1.86738 1.86283 1.30060 1.12823 1.20827 1.07890 1.21432 1.00951 1.03173 0.89316 0.89840 0.93588 0.91940 0.76132 0.83085 0.85603 0.90914 0.87818 0.84985 0.87661 0.89381 0.88777 0.82513 0.83902 0.82397 0.83306 0.87279 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 8.75 71.98 0.63 -1.53 16 2 C 0.16 1.76 2.05 44.99 0.09 1.85 16 3 H 0.09 0.96 6.49 -2.39 -0.02 0.95 16 4 N -0.74 -12.27 5.16 -318.81 -1.65 -13.91 16 5 C 0.17 4.42 6.64 38.21 0.25 4.67 16 6 C -0.15 -4.09 8.83 22.39 0.20 -3.89 16 7 C -0.14 -5.29 9.98 22.37 0.22 -5.06 16 8 C 0.06 2.93 6.65 22.59 0.15 3.08 16 9 O -0.26 -14.06 8.58 -23.14 -0.20 -14.26 16 10 C -0.39 -23.22 9.94 67.91 0.68 -22.54 16 11 H 0.08 4.80 5.43 -2.91 -0.02 4.78 16 12 C 0.00 0.11 5.49 84.82 0.47 0.58 16 13 N -0.93 -56.66 13.96 21.61 0.30 -56.36 16 14 Si 0.97 46.25 28.62 68.60 1.96 48.21 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.26 -12.46 7.11 99.48 0.71 -11.76 16 18 C -0.19 -8.17 9.16 22.37 0.20 -7.97 16 19 C -0.15 -4.97 9.89 22.39 0.22 -4.75 16 20 C -0.11 -0.65 1.93 -11.07 -0.02 -0.67 16 21 C -0.12 -0.73 4.32 30.47 0.13 -0.60 16 22 C -0.59 -3.05 6.35 72.00 0.46 -2.59 16 23 S 2.41 25.28 5.31 -56.49 -0.30 24.98 16 24 O -0.99 -19.00 18.10 -127.40 -2.31 -21.31 16 25 O -0.98 -18.09 17.94 -127.40 -2.28 -20.37 16 26 C -0.58 -2.11 6.35 71.99 0.46 -1.65 16 27 C -0.11 -0.46 4.38 30.47 0.13 -0.32 16 28 H 0.08 0.67 6.66 -2.39 -0.02 0.66 16 29 H 0.04 0.75 7.68 -2.38 -0.02 0.73 16 30 H 0.06 0.74 6.66 -2.39 -0.02 0.72 16 31 H 0.40 5.33 6.72 -92.71 -0.62 4.70 16 32 H 0.15 3.11 6.09 -2.91 -0.02 3.10 16 33 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 34 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 35 H 0.10 5.01 5.63 -2.91 -0.02 5.00 16 36 H 0.13 3.57 8.06 -2.91 -0.02 3.54 16 37 H 0.11 0.37 8.09 -2.38 -0.02 0.35 16 38 H 0.09 0.64 6.85 -2.38 -0.02 0.63 16 39 H 0.09 0.55 6.16 -2.39 -0.01 0.54 16 40 H 0.16 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.16 -0.11 8.14 -2.39 -0.02 -0.13 16 43 H 0.15 0.25 8.14 -2.38 -0.02 0.23 16 44 H 0.11 0.20 8.10 -2.39 -0.02 0.18 16 45 H 0.09 0.43 6.85 -2.39 -0.02 0.41 16 Total: -1.00 -82.92 364.10 0.20 -82.71 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.40 Total: 11.70 kcal Atomic # 6 Polarization: -45.66 SS G_CDS: 4.27 Total: -41.39 kcal Atomic # 7 Polarization: -68.93 SS G_CDS: -1.34 Total: -70.27 kcal Atomic # 8 Polarization: -51.15 SS G_CDS: -4.79 Total: -55.94 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.96 Total: 48.21 kcal Atomic # 16 Polarization: 25.28 SS G_CDS: -0.30 Total: 24.98 kcal Total: -82.92 0.20 -82.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321070601.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.505 kcal (2) G-P(sol) polarization free energy of solvation -82.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds