Wall clock time and date at job start Wed Apr 1 2020 00:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46598 * 2 1 4 4 C 1.52994 * 109.47025 * 120.00061 * 2 1 3 5 5 C 1.53002 * 109.47226 * 185.00354 * 4 2 1 6 6 S 1.81392 * 109.47561 * 180.02562 * 5 4 2 7 7 C 1.81397 * 101.92514 * 179.97438 * 6 5 4 8 8 O 1.42096 * 108.57888 * 294.48881 * 6 5 4 9 9 O 1.42107 * 108.57882 * 65.51011 * 6 5 4 10 10 N 1.46494 * 109.46992 * 240.00220 * 2 1 3 11 11 C 1.34779 * 120.00394 * 85.00076 * 10 2 1 12 12 O 1.21285 * 119.99406 * 359.97438 * 11 10 2 13 13 C 1.50696 * 120.00540 * 179.97438 * 11 10 2 14 14 H 1.09000 * 109.47228 * 59.99707 * 13 11 10 15 15 C 1.50700 * 109.46820 * 299.99999 * 13 11 10 16 16 H 1.08000 * 119.99863 * 324.87316 * 15 13 11 17 17 C 1.37882 * 120.00067 * 144.88198 * 15 13 11 18 18 N 1.31513 * 119.99724 * 5.18829 * 17 15 13 19 19 Si 1.86796 * 120.00141 * 185.18940 * 17 15 13 20 20 H 1.48501 * 109.46805 * 89.99807 * 19 17 15 21 21 H 1.48499 * 109.47344 * 209.99778 * 19 17 15 22 22 H 1.48495 * 109.47142 * 329.99976 * 19 17 15 23 23 C 1.50704 * 109.47280 * 179.97438 * 13 11 10 24 24 C 1.38238 * 119.99893 * 66.01128 * 23 13 11 25 25 C 1.38235 * 119.99767 * 179.79055 * 24 23 13 26 26 C 1.38236 * 119.99628 * 0.43611 * 25 24 23 27 27 C 1.38233 * 120.00448 * 359.81466 * 26 25 24 28 28 C 1.38229 * 119.99809 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.46977 * 60.00126 * 1 2 3 30 30 H 1.08999 * 109.46598 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46855 * 299.99611 * 1 2 3 32 32 H 1.09002 * 109.47037 * 65.00369 * 4 2 1 33 33 H 1.08998 * 109.47686 * 305.00141 * 4 2 1 34 34 H 1.08992 * 109.47453 * 59.99585 * 5 4 2 35 35 H 1.09011 * 109.46553 * 300.00151 * 5 4 2 36 36 H 1.08998 * 109.46859 * 59.99723 * 7 6 5 37 37 H 1.09002 * 109.47352 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.47407 * 300.00234 * 7 6 5 39 39 H 0.97005 * 120.00115 * 264.99707 * 10 2 1 40 40 H 0.96998 * 119.99991 * 180.02562 * 18 17 15 41 41 H 1.07997 * 119.99979 * 359.97438 * 24 23 13 42 42 H 1.07992 * 119.99617 * 180.27496 * 25 24 23 43 43 H 1.08008 * 119.99438 * 179.83779 * 26 25 24 44 44 H 1.08003 * 119.99952 * 179.97438 * 27 26 25 45 45 H 1.08006 * 120.00225 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3137 6 16 4.1696 -1.4690 2.7944 7 6 5.9616 -1.2175 2.6670 8 8 3.6954 -0.7781 3.9420 9 8 3.8970 -2.8570 2.6582 10 7 2.0184 -0.6905 -1.1962 11 6 2.1471 -0.0182 -2.3572 12 8 1.8582 1.1585 -2.4116 13 6 2.6499 -0.7284 -3.5875 14 1 1.9778 -1.5507 -3.8326 15 6 4.0316 -1.2700 -3.3253 16 1 4.7181 -0.7186 -2.7001 17 6 4.4192 -2.4696 -3.8839 18 7 3.6227 -3.0906 -4.7262 19 14 6.0757 -3.2126 -3.4442 20 1 5.9230 -4.0972 -2.2612 21 1 6.5833 -4.0053 -4.5927 22 1 7.0376 -2.1261 -3.1289 23 6 2.6999 0.2398 -4.7413 24 6 3.5834 1.3027 -4.7139 25 6 3.6323 2.1883 -5.7741 26 6 2.7914 2.0162 -6.8577 27 6 1.9043 0.9564 -6.8828 28 6 1.8585 0.0683 -5.8245 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7517 -1.7715 1.2055 33 1 1.6054 -0.2618 2.1370 34 1 3.8532 0.4370 1.3574 35 1 3.9995 -1.0727 0.4259 36 1 6.1797 -0.1495 2.6711 37 1 6.4563 -1.6923 3.5143 38 1 6.3254 -1.6590 1.7393 39 1 2.2491 -1.6317 -1.1526 40 1 3.8953 -3.9346 -5.1188 41 1 4.2375 1.4394 -3.8654 42 1 4.3256 3.0161 -5.7547 43 1 2.8277 2.7097 -7.6849 44 1 1.2470 0.8222 -7.7292 45 1 1.1651 -0.7596 -5.8438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361768382.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:31 Heat of formation + Delta-G solvation = -120.695998 kcal Electronic energy + Delta-G solvation = -27786.984814 eV Core-core repulsion = 23895.301377 eV Total energy + Delta-G solvation = -3891.683437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.92281 -39.47829 -37.95735 -37.37576 -36.98142 -35.48348 -33.30411 -32.79143 -31.52470 -31.04058 -30.26531 -28.91675 -25.90606 -25.19401 -23.22562 -22.91875 -21.63143 -20.96638 -19.75770 -18.65944 -17.91456 -17.64881 -17.41243 -17.14808 -16.91526 -16.77967 -16.27230 -15.89820 -15.53882 -15.23197 -15.04394 -14.74005 -14.37867 -14.11635 -13.99826 -13.94891 -13.92076 -13.83676 -13.37210 -13.34360 -13.10102 -13.00323 -12.99961 -12.80091 -12.77388 -12.74838 -12.38168 -12.17614 -12.07009 -11.93322 -11.87693 -11.64779 -11.25407 -11.22352 -10.65653 -10.37085 -9.85246 -9.54683 -9.23714 -8.18653 -6.30669 -0.88799 0.76817 0.82106 1.44531 1.46625 1.54475 1.89215 2.00879 2.44225 2.57135 2.72430 3.10880 3.16215 3.28995 3.62330 3.80662 3.91784 4.11320 4.23178 4.24316 4.30725 4.39385 4.40969 4.45662 4.52387 4.60882 4.62666 4.73136 4.85061 4.89265 4.97828 4.98950 5.03207 5.12549 5.13858 5.32003 5.38539 5.46952 5.67254 5.78200 5.79760 5.85538 5.97778 6.25437 6.42001 6.74899 6.84648 7.36927 7.61330 8.89459 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011274 B = 0.003903 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.082923 B = 7173.077107 C = 8559.753360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.077 0.923 4 C -0.119 4.119 5 C -0.612 4.612 6 S 2.435 3.565 7 C -0.646 4.646 8 O -0.977 6.977 9 O -0.984 6.984 10 N -0.715 5.715 11 C 0.530 3.470 12 O -0.591 6.591 13 C 0.049 3.951 14 H 0.062 0.938 15 C -0.514 4.514 16 H 0.062 0.938 17 C 0.032 3.968 18 N -0.907 5.907 19 Si 0.947 3.053 20 H -0.262 1.262 21 H -0.293 1.293 22 H -0.265 1.265 23 C -0.035 4.035 24 C -0.109 4.109 25 C -0.135 4.135 26 C -0.145 4.145 27 C -0.131 4.131 28 C -0.145 4.145 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.155 0.845 35 H 0.138 0.862 36 H 0.153 0.847 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.407 0.593 40 H 0.265 0.735 41 H 0.099 0.901 42 H 0.136 0.864 43 H 0.145 0.855 44 H 0.137 0.863 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.747 4.750 9.751 10.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.095 0.905 4 C -0.158 4.158 5 C -0.742 4.742 6 S 2.622 3.378 7 C -0.798 4.798 8 O -0.974 6.974 9 O -0.981 6.981 10 N -0.366 5.366 11 C 0.319 3.681 12 O -0.473 6.473 13 C 0.028 3.972 14 H 0.080 0.920 15 C -0.551 4.551 16 H 0.080 0.920 17 C -0.170 4.170 18 N -0.544 5.544 19 Si 0.772 3.228 20 H -0.187 1.187 21 H -0.219 1.219 22 H -0.189 1.189 23 C -0.036 4.036 24 C -0.127 4.127 25 C -0.153 4.153 26 C -0.163 4.163 27 C -0.149 4.149 28 C -0.163 4.163 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.129 0.871 34 H 0.173 0.827 35 H 0.156 0.844 36 H 0.171 0.829 37 H 0.159 0.841 38 H 0.160 0.840 39 H 0.243 0.757 40 H 0.074 0.926 41 H 0.117 0.883 42 H 0.154 0.846 43 H 0.163 0.837 44 H 0.155 0.845 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.033 4.942 10.307 11.477 hybrid contribution 1.284 -0.813 -0.770 1.704 sum 2.317 4.128 9.537 10.647 Atomic orbital electron populations 1.22178 0.94789 1.02680 1.02373 1.20909 0.94347 0.96960 0.83670 0.90520 1.21678 0.91631 1.03269 0.99223 1.30351 1.06205 1.16483 1.21113 1.07140 0.79570 0.74645 0.76476 1.30146 1.22456 1.14017 1.13189 1.93536 1.80318 1.75968 1.47621 1.93552 1.84819 1.32606 1.87145 1.45985 1.67179 1.14479 1.08992 1.21283 0.74568 0.86427 0.85835 1.90552 1.52667 1.17803 1.86235 1.18036 0.98560 0.93090 0.87522 0.91998 1.20790 0.97492 1.05242 1.31598 0.92004 1.25638 1.00193 0.97175 0.94008 1.70031 1.38413 1.17034 1.28944 0.85714 0.80132 0.78773 0.78195 1.18714 1.21887 1.18897 1.20137 0.93337 0.93953 0.96168 1.20848 0.98485 0.95118 0.98270 1.21331 1.00199 0.99601 0.94200 1.21260 0.97040 0.98938 0.99089 1.21288 0.99945 0.95363 0.98323 1.21132 1.00024 0.99708 0.95429 0.94398 0.91645 0.89384 0.89311 0.87056 0.82686 0.84362 0.82908 0.84142 0.83992 0.75688 0.92558 0.88303 0.84638 0.83698 0.84526 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 9.48 71.98 0.68 -3.40 16 2 C 0.15 3.97 2.57 44.99 0.12 4.09 16 3 H 0.08 2.26 7.58 -2.39 -0.02 2.24 16 4 C -0.12 -2.48 4.76 30.59 0.15 -2.33 16 5 C -0.61 -10.99 5.69 71.98 0.41 -10.58 16 6 S 2.43 43.87 5.36 -56.49 -0.30 43.56 16 7 C -0.65 -7.03 10.62 113.37 1.20 -5.83 16 8 O -0.98 -23.38 18.10 -127.37 -2.31 -25.69 16 9 O -0.98 -26.43 18.10 -127.37 -2.30 -28.73 16 10 N -0.71 -24.25 4.43 -442.54 -1.96 -26.21 16 11 C 0.53 22.62 7.01 87.66 0.61 23.23 16 12 O -0.59 -27.76 15.08 -3.04 -0.05 -27.81 16 13 C 0.05 2.32 2.38 -13.03 -0.03 2.29 16 14 H 0.06 3.19 7.12 -2.39 -0.02 3.17 16 15 C -0.51 -24.66 7.47 25.60 0.19 -24.47 16 16 H 0.06 2.91 7.82 -2.91 -0.02 2.88 16 17 C 0.03 1.56 5.45 84.66 0.46 2.02 16 18 N -0.91 -47.82 12.84 21.45 0.28 -47.55 16 19 Si 0.95 38.64 29.54 68.60 2.03 40.66 16 20 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 21 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 23 C -0.03 -1.64 4.30 -19.86 -0.09 -1.73 16 24 C -0.11 -4.80 8.31 22.27 0.18 -4.62 16 25 C -0.14 -5.02 10.05 22.27 0.22 -4.79 16 26 C -0.15 -4.96 10.05 22.27 0.22 -4.73 16 27 C -0.13 -4.84 10.05 22.27 0.22 -4.62 16 28 C -0.14 -6.37 9.67 22.27 0.22 -6.16 16 29 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.16 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.14 2.67 7.75 -2.38 -0.02 2.66 16 36 H 0.15 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.14 1.37 8.14 -2.39 -0.02 1.36 16 39 H 0.41 13.32 8.49 -92.70 -0.79 12.54 16 40 H 0.27 13.45 8.31 -92.71 -0.77 12.67 16 41 H 0.10 4.43 7.90 -2.91 -0.02 4.40 16 42 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 43 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 44 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 45 H 0.10 4.54 7.96 -2.91 -0.02 4.52 16 Total: -1.00 -73.92 392.99 0.36 -73.57 By element: Atomic # 1 Polarization: 39.63 SS G_CDS: 0.20 Total: 39.82 kcal Atomic # 6 Polarization: -46.41 SS G_CDS: 4.78 Total: -41.63 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -1.68 Total: -73.76 kcal Atomic # 8 Polarization: -77.58 SS G_CDS: -4.66 Total: -82.23 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.66 kcal Atomic # 16 Polarization: 43.87 SS G_CDS: -0.30 Total: 43.56 kcal Total: -73.92 0.36 -73.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361768382.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.130 kcal (2) G-P(sol) polarization free energy of solvation -73.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds