Wall clock time and date at job start Wed Apr 1 2020 00:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47329 * 2 1 4 4 C 1.53002 * 109.47142 * 239.99955 * 2 1 3 5 5 C 1.52994 * 109.47293 * 175.00186 * 4 2 1 6 6 S 1.81401 * 109.47076 * 180.02562 * 5 4 2 7 7 C 1.81407 * 101.92018 * 179.97438 * 6 5 4 8 8 O 1.42094 * 108.57673 * 294.48417 * 6 5 4 9 9 O 1.42096 * 108.58015 * 65.51497 * 6 5 4 10 10 N 1.46498 * 109.47152 * 119.99898 * 2 1 3 11 11 C 1.34778 * 120.00150 * 275.00126 * 10 2 1 12 12 O 1.21277 * 120.00114 * 359.97438 * 11 10 2 13 13 C 1.50704 * 119.99764 * 180.27716 * 11 10 2 14 14 H 1.09001 * 109.46713 * 299.71935 * 13 11 10 15 15 C 1.50697 * 109.47259 * 59.72258 * 13 11 10 16 16 H 1.07998 * 120.00171 * 33.98742 * 15 13 11 17 17 C 1.37879 * 119.99838 * 213.98861 * 15 13 11 18 18 N 1.31516 * 120.00183 * 6.39175 * 17 15 13 19 19 Si 1.86794 * 120.00217 * 186.39375 * 17 15 13 20 20 H 1.48507 * 109.46818 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47365 * 119.99903 * 19 17 15 22 22 H 1.48503 * 109.47209 * 239.99955 * 19 17 15 23 23 C 1.50705 * 109.46892 * 179.72271 * 13 11 10 24 24 C 1.38232 * 119.99875 * 293.85173 * 23 13 11 25 25 C 1.38234 * 120.00162 * 179.79142 * 24 23 13 26 26 C 1.38236 * 119.99702 * 0.43413 * 25 24 23 27 27 C 1.38243 * 120.00208 * 359.81458 * 26 25 24 28 28 C 1.38233 * 119.99717 * 359.97438 * 27 26 25 29 29 H 1.08994 * 109.46840 * 59.99810 * 1 2 3 30 30 H 1.08999 * 109.47329 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46782 * 300.00145 * 1 2 3 32 32 H 1.09005 * 109.46790 * 295.00040 * 4 2 1 33 33 H 1.09004 * 109.46868 * 54.99715 * 4 2 1 34 34 H 1.09004 * 109.47117 * 300.00220 * 5 4 2 35 35 H 1.09000 * 109.47051 * 59.99966 * 5 4 2 36 36 H 1.09002 * 109.47096 * 59.99626 * 7 6 5 37 37 H 1.09001 * 109.46709 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.46736 * 299.99765 * 7 6 5 39 39 H 0.97009 * 120.00120 * 94.99924 * 10 2 1 40 40 H 0.96993 * 120.00697 * 180.02562 * 18 17 15 41 41 H 1.08000 * 119.99844 * 359.97438 * 24 23 13 42 42 H 1.07998 * 120.00527 * 180.27033 * 25 24 23 43 43 H 1.07999 * 120.00592 * 179.83552 * 26 25 24 44 44 H 1.07990 * 120.00478 * 179.97438 * 27 26 25 45 45 H 1.07996 * 120.00185 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 16 4.1694 -1.4679 -2.7952 7 6 5.9613 -1.2153 -2.6685 8 8 3.8966 -2.8558 -2.6603 9 8 3.6953 -0.7759 -3.9422 10 7 2.0184 -0.6906 1.1962 11 6 2.1471 -0.0182 2.3571 12 8 1.8591 1.1586 2.4115 13 6 2.6554 -0.7272 3.5861 14 1 1.9841 -1.5491 3.8350 15 6 4.0357 -1.2694 3.3184 16 1 4.7131 -0.7280 2.6747 17 6 4.4338 -2.4567 3.8953 18 7 3.5708 -3.1791 4.5757 19 14 6.1989 -3.0393 3.7106 20 1 6.9636 -2.0538 2.9046 21 1 6.8201 -3.1702 5.0530 22 1 6.2162 -4.3573 3.0265 23 6 2.7112 0.2425 4.7383 24 6 3.5971 1.3032 4.7067 25 6 3.6453 2.1952 5.7616 26 6 2.8141 2.0213 6.8523 27 6 1.9318 0.9575 6.8863 28 6 1.8805 0.0681 5.8294 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7516 -1.7716 -1.2055 33 1 1.6053 -0.2617 -2.1370 34 1 3.8532 0.4369 -1.3573 35 1 3.9994 -1.0729 -0.4260 36 1 6.3258 -1.6572 -1.7411 37 1 6.4559 -1.6901 -3.5159 38 1 6.1788 -0.1473 -2.6721 39 1 2.2491 -1.6318 1.1526 40 1 3.8508 -4.0142 4.9819 41 1 4.2494 1.4368 3.8563 42 1 4.3343 3.0264 5.7350 43 1 2.8535 2.7165 7.6778 44 1 1.2826 0.8214 7.7385 45 1 1.1915 -0.7631 5.8561 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361768400.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:40 Heat of formation + Delta-G solvation = -98.273539 kcal Electronic energy + Delta-G solvation = -27773.862051 eV Core-core repulsion = 23883.150925 eV Total energy + Delta-G solvation = -3890.711126 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.35766 -38.00139 -37.05305 -36.19909 -35.95802 -33.70490 -32.04042 -31.14774 -30.01227 -29.98228 -29.54498 -27.26533 -24.45591 -23.89894 -21.70763 -21.52466 -20.33600 -19.39543 -18.94443 -16.89752 -16.81291 -16.37583 -16.17988 -16.00303 -15.90829 -15.55376 -14.60074 -14.36776 -14.11989 -13.94961 -13.76823 -13.57075 -13.36861 -13.32177 -12.89034 -12.73645 -12.49297 -12.43401 -12.17099 -12.07085 -11.99302 -11.80503 -11.68230 -11.54535 -11.47918 -11.18191 -11.14555 -11.07335 -10.88800 -10.45496 -10.34278 -10.32216 -10.03494 -9.49876 -8.84272 -8.63842 -8.40920 -7.99309 -7.66126 -6.34877 -4.40478 -0.12042 2.32779 2.35807 2.62342 3.12253 3.21258 3.22730 3.49056 3.66646 3.91313 3.95985 4.21226 4.48474 4.61555 4.63434 4.78036 4.85301 4.90760 5.03274 5.40055 5.46515 5.50132 5.55278 5.65479 5.68105 5.74106 5.81332 5.87395 5.89668 6.08106 6.17993 6.35233 6.41692 6.46541 6.55642 6.82704 6.92954 7.12442 7.21319 7.32518 7.39963 7.54894 7.70527 7.90774 8.01935 8.34675 8.63707 9.19848 9.26336 10.73890 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011186 B = 0.003892 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.472104 B = 7192.810195 C = 8579.019201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.150 3.850 3 H 0.086 0.914 4 C -0.116 4.116 5 C -0.608 4.608 6 S 2.419 3.581 7 C -0.658 4.658 8 O -0.939 6.939 9 O -0.946 6.946 10 N -0.727 5.727 11 C 0.529 3.471 12 O -0.567 6.567 13 C 0.047 3.953 14 H 0.092 0.908 15 C -0.516 4.516 16 H 0.062 0.938 17 C 0.076 3.924 18 N -0.876 5.876 19 Si 0.893 3.107 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.011 4.011 24 C -0.085 4.085 25 C -0.135 4.135 26 C -0.149 4.149 27 C -0.132 4.132 28 C -0.120 4.120 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.133 0.867 35 H 0.144 0.856 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.405 0.595 40 H 0.267 0.733 41 H 0.110 0.890 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.529 3.766 -8.979 9.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.043 3.957 3 H 0.104 0.896 4 C -0.155 4.155 5 C -0.738 4.738 6 S 2.602 3.398 7 C -0.807 4.807 8 O -0.936 6.936 9 O -0.944 6.944 10 N -0.380 5.380 11 C 0.319 3.681 12 O -0.446 6.446 13 C 0.026 3.974 14 H 0.110 0.890 15 C -0.554 4.554 16 H 0.080 0.920 17 C -0.129 4.129 18 N -0.512 5.512 19 Si 0.720 3.280 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.012 4.012 24 C -0.103 4.103 25 C -0.153 4.153 26 C -0.167 4.167 27 C -0.150 4.150 28 C -0.139 4.139 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.152 0.848 35 H 0.162 0.838 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.241 0.759 40 H 0.077 0.923 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.147 3.966 -9.509 10.305 hybrid contribution 1.762 -0.427 0.754 1.964 sum 1.615 3.539 -8.756 9.581 Atomic orbital electron populations 1.22203 0.95580 1.02166 1.02348 1.20709 0.93663 0.97404 0.83905 0.89574 1.21635 0.90510 1.03256 1.00102 1.30331 1.07045 1.15018 1.21404 1.07838 0.78329 0.76182 0.77470 1.30274 1.26637 1.11873 1.11960 1.93608 1.83203 1.30060 1.86730 1.93579 1.78686 1.75762 1.46337 1.46048 1.68399 1.14522 1.08989 1.21603 0.74464 0.86783 0.85239 1.90578 1.51416 1.16912 1.85728 1.18153 0.99429 0.93542 0.86291 0.89003 1.20677 0.97211 1.06341 1.31171 0.91982 1.24956 0.97608 0.95991 0.94393 1.69873 1.34030 1.13781 1.33517 0.86522 0.84448 0.78685 0.78382 1.19542 1.20623 1.20598 1.20059 0.92160 0.93302 0.95700 1.20807 0.97995 0.94114 0.97371 1.20958 0.99896 0.99540 0.94884 1.20805 0.98550 0.98911 0.98422 1.20911 0.99649 0.95994 0.98426 1.21009 0.99654 0.98854 0.94342 0.92151 0.92389 0.91717 0.89582 0.89206 0.84845 0.83817 0.85015 0.85525 0.85407 0.75929 0.92263 0.87171 0.87617 0.87705 0.87541 0.86997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.48 37.16 0.35 -1.77 16 2 C 0.15 2.07 2.58 -67.93 -0.17 1.89 16 3 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 4 C -0.12 -1.28 4.76 -26.73 -0.13 -1.41 16 5 C -0.61 -5.93 5.69 37.15 0.21 -5.71 16 6 S 2.42 23.43 5.36 -107.50 -0.58 22.86 16 7 C -0.66 -4.59 10.62 101.05 1.07 -3.51 16 8 O -0.94 -12.81 18.10 -57.83 -1.05 -13.85 16 9 O -0.95 -11.94 18.10 -57.83 -1.05 -12.98 16 10 N -0.73 -12.19 4.43 -53.80 -0.24 -12.42 16 11 C 0.53 10.97 7.01 -10.98 -0.08 10.90 16 12 O -0.57 -12.96 15.08 5.56 0.08 -12.88 16 13 C 0.05 1.06 2.45 -94.07 -0.23 0.83 16 14 H 0.09 2.23 7.00 -51.93 -0.36 1.87 16 15 C -0.52 -12.15 7.45 -34.44 -0.26 -12.41 16 16 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 17 C 0.08 1.84 5.45 -17.82 -0.10 1.74 16 18 N -0.88 -22.37 12.78 55.43 0.71 -21.66 16 19 Si 0.89 19.07 29.54 -169.99 -5.02 14.05 16 20 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 C -0.01 -0.25 4.30 -104.62 -0.45 -0.70 16 24 C -0.08 -1.84 8.31 -39.59 -0.33 -2.17 16 25 C -0.13 -2.58 10.05 -39.58 -0.40 -2.98 16 26 C -0.15 -2.70 10.05 -39.58 -0.40 -3.10 16 27 C -0.13 -2.49 10.05 -39.58 -0.40 -2.89 16 28 C -0.12 -2.57 9.67 -39.58 -0.38 -2.95 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.13 1.04 8.14 -51.92 -0.42 0.62 16 35 H 0.14 1.48 7.75 -51.92 -0.40 1.07 16 36 H 0.13 0.85 8.14 -51.92 -0.42 0.43 16 37 H 0.13 0.77 8.14 -51.92 -0.42 0.35 16 38 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.41 6.57 8.48 -40.82 -0.35 6.22 16 40 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 41 H 0.11 2.39 7.89 -52.49 -0.41 1.98 16 42 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 43 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 44 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 45 H 0.11 2.31 7.95 -52.49 -0.42 1.89 16 LS Contribution 392.86 15.07 5.92 5.92 Total: -1.00 -33.37 392.86 -9.85 -43.22 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -6.96 Total: 11.99 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: -1.68 Total: -24.24 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.47 Total: -34.09 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -2.01 Total: -39.72 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Atomic # 16 Polarization: 23.43 SS G_CDS: -0.58 Total: 22.86 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.37 -9.85 -43.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361768400.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.050 kcal (2) G-P(sol) polarization free energy of solvation -33.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds