Wall clock time and date at job start Wed Apr 1 2020 00:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47329 * 2 1 4 4 C 1.53002 * 109.47142 * 239.99955 * 2 1 3 5 5 C 1.52994 * 109.47293 * 175.00186 * 4 2 1 6 6 S 1.81401 * 109.47076 * 180.02562 * 5 4 2 7 7 C 1.81407 * 101.92018 * 179.97438 * 6 5 4 8 8 O 1.42094 * 108.57673 * 294.48417 * 6 5 4 9 9 O 1.42096 * 108.58015 * 65.51497 * 6 5 4 10 10 N 1.46498 * 109.47152 * 119.99898 * 2 1 3 11 11 C 1.34778 * 120.00150 * 275.00126 * 10 2 1 12 12 O 1.21277 * 120.00114 * 359.97438 * 11 10 2 13 13 C 1.50704 * 119.99764 * 180.27716 * 11 10 2 14 14 H 1.09001 * 109.46713 * 299.71935 * 13 11 10 15 15 C 1.50697 * 109.47259 * 59.72258 * 13 11 10 16 16 H 1.07998 * 120.00171 * 33.98742 * 15 13 11 17 17 C 1.37879 * 119.99838 * 213.98861 * 15 13 11 18 18 N 1.31516 * 120.00183 * 6.39175 * 17 15 13 19 19 Si 1.86794 * 120.00217 * 186.39375 * 17 15 13 20 20 H 1.48507 * 109.46818 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47365 * 119.99903 * 19 17 15 22 22 H 1.48503 * 109.47209 * 239.99955 * 19 17 15 23 23 C 1.50705 * 109.46892 * 179.72271 * 13 11 10 24 24 C 1.38232 * 119.99875 * 293.85173 * 23 13 11 25 25 C 1.38234 * 120.00162 * 179.79142 * 24 23 13 26 26 C 1.38236 * 119.99702 * 0.43413 * 25 24 23 27 27 C 1.38243 * 120.00208 * 359.81458 * 26 25 24 28 28 C 1.38233 * 119.99717 * 359.97438 * 27 26 25 29 29 H 1.08994 * 109.46840 * 59.99810 * 1 2 3 30 30 H 1.08999 * 109.47329 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46782 * 300.00145 * 1 2 3 32 32 H 1.09005 * 109.46790 * 295.00040 * 4 2 1 33 33 H 1.09004 * 109.46868 * 54.99715 * 4 2 1 34 34 H 1.09004 * 109.47117 * 300.00220 * 5 4 2 35 35 H 1.09000 * 109.47051 * 59.99966 * 5 4 2 36 36 H 1.09002 * 109.47096 * 59.99626 * 7 6 5 37 37 H 1.09001 * 109.46709 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.46736 * 299.99765 * 7 6 5 39 39 H 0.97009 * 120.00120 * 94.99924 * 10 2 1 40 40 H 0.96993 * 120.00697 * 180.02562 * 18 17 15 41 41 H 1.08000 * 119.99844 * 359.97438 * 24 23 13 42 42 H 1.07998 * 120.00527 * 180.27033 * 25 24 23 43 43 H 1.07999 * 120.00592 * 179.83552 * 26 25 24 44 44 H 1.07990 * 120.00478 * 179.97438 * 27 26 25 45 45 H 1.07996 * 120.00185 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 16 4.1694 -1.4679 -2.7952 7 6 5.9613 -1.2153 -2.6685 8 8 3.8966 -2.8558 -2.6603 9 8 3.6953 -0.7759 -3.9422 10 7 2.0184 -0.6906 1.1962 11 6 2.1471 -0.0182 2.3571 12 8 1.8591 1.1586 2.4115 13 6 2.6554 -0.7272 3.5861 14 1 1.9841 -1.5491 3.8350 15 6 4.0357 -1.2694 3.3184 16 1 4.7131 -0.7280 2.6747 17 6 4.4338 -2.4567 3.8953 18 7 3.5708 -3.1791 4.5757 19 14 6.1989 -3.0393 3.7106 20 1 6.9636 -2.0538 2.9046 21 1 6.8201 -3.1702 5.0530 22 1 6.2162 -4.3573 3.0265 23 6 2.7112 0.2425 4.7383 24 6 3.5971 1.3032 4.7067 25 6 3.6453 2.1952 5.7616 26 6 2.8141 2.0213 6.8523 27 6 1.9318 0.9575 6.8863 28 6 1.8805 0.0681 5.8294 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7516 -1.7716 -1.2055 33 1 1.6053 -0.2617 -2.1370 34 1 3.8532 0.4369 -1.3573 35 1 3.9994 -1.0729 -0.4260 36 1 6.3258 -1.6572 -1.7411 37 1 6.4559 -1.6901 -3.5159 38 1 6.1788 -0.1473 -2.6721 39 1 2.2491 -1.6318 1.1526 40 1 3.8508 -4.0142 4.9819 41 1 4.2494 1.4368 3.8563 42 1 4.3343 3.0264 5.7350 43 1 2.8535 2.7165 7.6778 44 1 1.2826 0.8214 7.7385 45 1 1.1915 -0.7631 5.8561 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361768400.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:39 Heat of formation + Delta-G solvation = -120.728610 kcal Electronic energy + Delta-G solvation = -27774.835776 eV Core-core repulsion = 23883.150925 eV Total energy + Delta-G solvation = -3891.684851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.92275 -39.48733 -37.95578 -37.37416 -36.97954 -35.48860 -33.29897 -32.80001 -31.53594 -31.03918 -30.26157 -28.91381 -25.91292 -25.19335 -23.23447 -22.92249 -21.63170 -20.96595 -19.75398 -18.66152 -17.91228 -17.65016 -17.41697 -17.14535 -16.91254 -16.77412 -16.27971 -15.89882 -15.54454 -15.23476 -15.04324 -14.74173 -14.37941 -14.12596 -14.00937 -13.97130 -13.91989 -13.83488 -13.36567 -13.29689 -13.09827 -13.00345 -12.99729 -12.87121 -12.79038 -12.73646 -12.38096 -12.15829 -12.06637 -11.94540 -11.87500 -11.64298 -11.25824 -11.21817 -10.68666 -10.35173 -9.84786 -9.55902 -9.25729 -8.20235 -6.30248 -0.88389 0.75325 0.80563 1.41950 1.46272 1.54624 1.89613 2.01066 2.43567 2.57540 2.72796 3.10049 3.16606 3.28146 3.62568 3.80666 3.91973 4.11676 4.22551 4.24570 4.30147 4.39184 4.40621 4.45588 4.51990 4.60211 4.62555 4.73219 4.84908 4.88903 4.97678 4.98112 5.03381 5.12984 5.15306 5.31929 5.37585 5.46405 5.66454 5.78022 5.79051 5.84965 5.97231 6.24521 6.40863 6.75342 6.85046 7.36627 7.61710 8.88509 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011186 B = 0.003892 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.472104 B = 7192.810195 C = 8579.019201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.077 0.923 4 C -0.119 4.119 5 C -0.612 4.612 6 S 2.436 3.564 7 C -0.646 4.646 8 O -0.984 6.984 9 O -0.977 6.977 10 N -0.715 5.715 11 C 0.530 3.470 12 O -0.592 6.592 13 C 0.047 3.953 14 H 0.065 0.935 15 C -0.512 4.512 16 H 0.062 0.938 17 C 0.034 3.966 18 N -0.908 5.908 19 Si 0.946 3.054 20 H -0.258 1.258 21 H -0.290 1.290 22 H -0.276 1.276 23 C -0.039 4.039 24 C -0.108 4.108 25 C -0.135 4.135 26 C -0.145 4.145 27 C -0.131 4.131 28 C -0.147 4.147 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.037 0.963 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.155 0.845 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.152 0.848 39 H 0.408 0.592 40 H 0.266 0.734 41 H 0.100 0.900 42 H 0.137 0.863 43 H 0.146 0.854 44 H 0.137 0.863 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.933 5.114 -9.226 10.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.095 0.905 4 C -0.158 4.158 5 C -0.741 4.741 6 S 2.623 3.377 7 C -0.798 4.798 8 O -0.981 6.981 9 O -0.975 6.975 10 N -0.366 5.366 11 C 0.319 3.681 12 O -0.473 6.473 13 C 0.026 3.974 14 H 0.083 0.917 15 C -0.550 4.550 16 H 0.080 0.920 17 C -0.168 4.168 18 N -0.546 5.546 19 Si 0.771 3.229 20 H -0.181 1.181 21 H -0.216 1.216 22 H -0.201 1.201 23 C -0.040 4.040 24 C -0.126 4.126 25 C -0.153 4.153 26 C -0.162 4.162 27 C -0.149 4.149 28 C -0.165 4.165 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.107 0.893 33 H 0.129 0.871 34 H 0.173 0.827 35 H 0.156 0.844 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.171 0.829 39 H 0.243 0.757 40 H 0.075 0.925 41 H 0.118 0.882 42 H 0.154 0.846 43 H 0.163 0.837 44 H 0.155 0.845 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.218 5.300 -9.799 11.207 hybrid contribution 1.313 -0.766 0.858 1.746 sum 2.531 4.534 -8.941 10.339 Atomic orbital electron populations 1.22179 0.94797 1.02665 1.02373 1.20910 0.94344 0.96942 0.83692 0.90532 1.21678 0.91656 1.03248 0.99214 1.30346 1.06179 1.16444 1.21140 1.07115 0.79556 0.74621 0.76445 1.30145 1.22454 1.13986 1.13193 1.93550 1.84806 1.32608 1.87140 1.93535 1.80343 1.75932 1.47661 1.45990 1.67162 1.14491 1.08980 1.21270 0.74582 0.86407 0.85835 1.90547 1.52781 1.17769 1.86220 1.18059 0.98587 0.93134 0.87667 0.91696 1.20804 0.97530 1.06059 1.30559 0.91997 1.25596 1.00629 0.96255 0.94341 1.69989 1.35524 1.14179 1.34865 0.85682 0.80679 0.78638 0.77875 1.18136 1.21618 1.20104 1.20166 0.93496 0.94189 0.96107 1.20860 0.98368 0.95027 0.98342 1.21344 1.00240 0.99516 0.94175 1.21274 0.97079 0.98869 0.99011 1.21294 0.99913 0.95316 0.98352 1.21154 1.00163 0.99826 0.95353 0.89366 0.91674 0.94402 0.89348 0.87061 0.82740 0.84396 0.83992 0.84141 0.82939 0.75682 0.92496 0.88192 0.84564 0.83650 0.84474 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 9.48 71.98 0.68 -3.44 16 2 C 0.15 4.01 2.58 44.99 0.12 4.13 16 3 H 0.08 2.28 7.58 -2.39 -0.02 2.26 16 4 C -0.12 -2.51 4.76 30.59 0.15 -2.36 16 5 C -0.61 -11.14 5.69 71.98 0.41 -10.73 16 6 S 2.44 44.21 5.36 -56.49 -0.30 43.91 16 7 C -0.65 -7.11 10.62 113.37 1.20 -5.90 16 8 O -0.98 -26.56 18.10 -127.37 -2.30 -28.86 16 9 O -0.98 -23.53 18.10 -127.37 -2.30 -25.83 16 10 N -0.71 -24.51 4.43 -442.53 -1.96 -26.47 16 11 C 0.53 22.72 7.01 87.66 0.61 23.34 16 12 O -0.59 -27.82 15.08 -3.02 -0.05 -27.87 16 13 C 0.05 2.21 2.45 -13.03 -0.03 2.17 16 14 H 0.07 3.36 7.00 -2.39 -0.02 3.34 16 15 C -0.51 -24.58 7.45 25.60 0.19 -24.39 16 16 H 0.06 2.91 7.82 -2.91 -0.02 2.89 16 17 C 0.03 1.65 5.45 84.65 0.46 2.11 16 18 N -0.91 -47.73 12.78 21.45 0.27 -47.46 16 19 Si 0.95 39.04 29.54 68.60 2.03 41.07 16 20 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 21 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 23 C -0.04 -1.80 4.30 -19.86 -0.09 -1.88 16 24 C -0.11 -4.69 8.31 22.27 0.19 -4.51 16 25 C -0.13 -4.92 10.05 22.27 0.22 -4.70 16 26 C -0.14 -4.84 10.05 22.27 0.22 -4.62 16 27 C -0.13 -4.76 10.05 22.27 0.22 -4.53 16 28 C -0.15 -6.39 9.67 22.27 0.22 -6.18 16 29 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.15 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.14 2.72 7.75 -2.39 -0.02 2.70 16 36 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.15 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.41 13.59 8.48 -92.70 -0.79 12.80 16 40 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 41 H 0.10 4.42 7.89 -2.91 -0.02 4.40 16 42 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16 43 H 0.15 3.69 8.06 -2.91 -0.02 3.66 16 44 H 0.14 4.04 8.06 -2.92 -0.02 4.01 16 45 H 0.10 4.53 7.95 -2.91 -0.02 4.50 16 Total: -1.00 -73.70 392.86 0.36 -73.34 By element: Atomic # 1 Polarization: 39.48 SS G_CDS: 0.20 Total: 39.68 kcal Atomic # 6 Polarization: -46.28 SS G_CDS: 4.78 Total: -41.50 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -1.68 Total: -73.93 kcal Atomic # 8 Polarization: -77.91 SS G_CDS: -4.66 Total: -82.56 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Atomic # 16 Polarization: 44.21 SS G_CDS: -0.30 Total: 43.91 kcal Total: -73.70 0.36 -73.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361768400.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.390 kcal (2) G-P(sol) polarization free energy of solvation -73.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds