Wall clock time and date at job start Wed Apr 1 2020 00:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47255 * 2 1 4 4 C 1.53002 * 109.47266 * 239.99833 * 2 1 3 5 5 C 1.53005 * 109.47098 * 175.00077 * 4 2 1 6 6 S 1.81401 * 109.47057 * 179.97438 * 5 4 2 7 7 C 1.81402 * 101.92121 * 179.97438 * 6 5 4 8 8 O 1.42093 * 108.57937 * 294.49252 * 6 5 4 9 9 O 1.42104 * 108.57156 * 65.51735 * 6 5 4 10 10 N 1.46501 * 109.47084 * 120.00002 * 2 1 3 11 11 C 1.34779 * 119.99662 * 275.00439 * 10 2 1 12 12 O 1.21280 * 120.00198 * 359.97438 * 11 10 2 13 13 C 1.50709 * 119.99756 * 180.02562 * 11 10 2 14 14 H 1.09000 * 109.47027 * 59.99194 * 13 11 10 15 15 C 1.50697 * 109.46544 * 299.99435 * 13 11 10 16 16 H 1.07995 * 120.00361 * 333.16802 * 15 13 11 17 17 C 1.37885 * 119.99590 * 153.17060 * 15 13 11 18 18 N 1.31513 * 119.99940 * 6.15164 * 17 15 13 19 19 Si 1.86807 * 119.99748 * 186.43242 * 17 15 13 20 20 H 1.48502 * 109.46673 * 269.72058 * 19 17 15 21 21 H 1.48498 * 109.47262 * 29.71845 * 19 17 15 22 22 H 1.48500 * 109.47035 * 149.72396 * 19 17 15 23 23 C 1.50697 * 109.46969 * 179.97438 * 13 11 10 24 24 C 1.38233 * 120.00580 * 66.38602 * 23 13 11 25 25 C 1.38229 * 120.00232 * 179.78832 * 24 23 13 26 26 C 1.38234 * 119.99914 * 0.44527 * 25 24 23 27 27 C 1.38228 * 120.00041 * 359.80679 * 26 25 24 28 28 C 1.38233 * 119.99478 * 246.66180 * 23 13 11 29 29 H 1.08997 * 109.47471 * 300.00323 * 1 2 3 30 30 H 1.09000 * 109.46536 * 60.00236 * 1 2 3 31 31 H 1.08995 * 109.47174 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46938 * 294.99995 * 4 2 1 33 33 H 1.08997 * 109.47229 * 55.00134 * 4 2 1 34 34 H 1.08997 * 109.47218 * 300.00332 * 5 4 2 35 35 H 1.09001 * 109.46673 * 60.00299 * 5 4 2 36 36 H 1.09007 * 109.46884 * 60.00182 * 7 6 5 37 37 H 1.08995 * 109.46965 * 179.97438 * 7 6 5 38 38 H 1.08996 * 109.46892 * 300.00757 * 7 6 5 39 39 H 0.97001 * 120.00216 * 94.99557 * 10 2 1 40 40 H 0.96992 * 119.99891 * 355.80870 * 18 17 15 41 41 H 1.08002 * 119.99342 * 359.97438 * 24 23 13 42 42 H 1.08000 * 120.00040 * 180.27839 * 25 24 23 43 43 H 1.08001 * 120.00097 * 179.83925 * 26 25 24 44 44 H 1.08003 * 120.00288 * 179.97438 * 27 26 25 45 45 H 1.08000 * 120.00245 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 16 4.1697 -1.4691 -2.7943 7 6 5.9615 -1.2164 -2.6676 8 8 3.8969 -2.8570 -2.6582 9 8 3.6955 -0.7780 -3.9419 10 7 2.0183 -0.6906 1.1962 11 6 2.1469 -0.0182 2.3572 12 8 1.8588 1.1586 2.4115 13 6 2.6498 -0.7285 3.5876 14 1 3.6491 -1.1203 3.3979 15 6 1.7204 -1.8653 3.9263 16 1 0.6817 -1.8191 3.6342 17 6 2.1962 -2.9646 4.6092 18 7 3.4277 -2.9696 5.0708 19 14 1.0941 -4.4499 4.8720 20 1 0.3518 -4.2956 6.1489 21 1 0.1291 -4.5553 3.7482 22 1 1.9252 -5.6792 4.9280 23 6 2.7009 0.2400 4.7410 24 6 1.5303 0.7679 5.2527 25 6 1.5769 1.6529 6.3136 26 6 2.7947 2.0170 6.8568 27 6 3.9656 1.4932 6.3418 28 6 3.9188 0.6048 5.2837 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7517 -1.7715 -1.2055 33 1 1.6055 -0.2618 -2.1370 34 1 3.8533 0.4369 -1.3572 35 1 3.9994 -1.0729 -0.4259 36 1 6.3260 -1.6575 -1.7398 37 1 6.4563 -1.6919 -3.5145 38 1 6.1789 -0.1483 -2.6720 39 1 2.2490 -1.6318 1.1527 40 1 4.0205 -2.2264 4.8788 41 1 0.5791 0.4866 4.8255 42 1 0.6620 2.0618 6.7162 43 1 2.8314 2.7105 7.6840 44 1 4.9172 1.7780 6.7660 45 1 4.8336 0.1955 4.8813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361768405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:43 Heat of formation + Delta-G solvation = -100.028531 kcal Electronic energy + Delta-G solvation = -27656.298634 eV Core-core repulsion = 23765.511406 eV Total energy + Delta-G solvation = -3890.787228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.50587 -38.10704 -37.15960 -36.30645 -36.06697 -34.01576 -32.17038 -30.93259 -30.11506 -30.06885 -29.64324 -27.12013 -24.45441 -23.74383 -21.79507 -21.59899 -20.44651 -19.63257 -19.05005 -17.46761 -16.88333 -16.46938 -16.28843 -16.11499 -15.94186 -15.52408 -14.63206 -14.34399 -14.08682 -13.95227 -13.87836 -13.62136 -13.47680 -13.41090 -13.00920 -12.93459 -12.59911 -12.37192 -12.27245 -12.18285 -12.17170 -11.94472 -11.83980 -11.62782 -11.55582 -11.28958 -11.02891 -10.98141 -10.86000 -10.44742 -10.34203 -10.25067 -10.18716 -9.05191 -8.87457 -8.63425 -8.52306 -8.07032 -7.69803 -6.61010 -4.36777 -0.24142 2.24014 2.28948 2.51102 3.33298 3.35389 3.38631 3.50690 3.53513 3.78807 3.84405 4.35359 4.37262 4.47411 4.51224 4.71144 4.75497 4.79414 5.13017 5.29193 5.34349 5.38094 5.48291 5.58400 5.61831 5.65512 5.73138 5.78242 5.84142 5.99652 6.04277 6.26018 6.34720 6.41433 6.41870 6.56016 6.82911 6.92440 7.07775 7.24565 7.31127 7.53794 7.77774 7.90837 8.15350 8.22200 8.56820 9.06912 9.35118 10.77857 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010799 B = 0.003509 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.103076 B = 7978.523995 C = 8874.192606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.150 3.850 3 H 0.086 0.914 4 C -0.118 4.118 5 C -0.609 4.609 6 S 2.421 3.579 7 C -0.658 4.658 8 O -0.937 6.937 9 O -0.944 6.944 10 N -0.727 5.727 11 C 0.534 3.466 12 O -0.563 6.563 13 C 0.043 3.957 14 H 0.063 0.937 15 C -0.593 4.593 16 H 0.058 0.942 17 C 0.032 3.968 18 N -0.893 5.893 19 Si 1.070 2.930 20 H -0.286 1.286 21 H -0.285 1.285 22 H -0.282 1.282 23 C -0.018 4.018 24 C -0.078 4.078 25 C -0.132 4.132 26 C -0.146 4.146 27 C -0.129 4.129 28 C -0.128 4.128 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.404 0.596 40 H 0.273 0.727 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.914 4.542 -11.086 12.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 H 0.104 0.896 4 C -0.157 4.157 5 C -0.738 4.738 6 S 2.603 3.397 7 C -0.807 4.807 8 O -0.935 6.935 9 O -0.941 6.941 10 N -0.380 5.380 11 C 0.323 3.677 12 O -0.441 6.441 13 C 0.022 3.978 14 H 0.081 0.919 15 C -0.631 4.631 16 H 0.077 0.923 17 C -0.175 4.175 18 N -0.527 5.527 19 Si 0.897 3.103 20 H -0.213 1.213 21 H -0.211 1.211 22 H -0.208 1.208 23 C -0.019 4.019 24 C -0.096 4.096 25 C -0.151 4.151 26 C -0.164 4.164 27 C -0.147 4.147 28 C -0.146 4.146 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.240 0.760 40 H 0.085 0.915 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.210 3.436 -11.003 11.737 hybrid contribution 0.752 1.488 0.100 1.670 sum 2.962 4.924 -10.904 12.325 Atomic orbital electron populations 1.22187 0.95334 1.02412 1.02330 1.20724 0.94023 0.97181 0.83674 0.89589 1.21660 0.90349 1.03457 1.00214 1.30340 1.07178 1.15019 1.21265 1.07829 0.78300 0.76155 0.77404 1.30277 1.26636 1.11862 1.11939 1.93616 1.83191 1.29985 1.86666 1.93589 1.78642 1.75769 1.46102 1.46041 1.68570 1.14336 1.09014 1.21301 0.75547 0.86296 0.84513 1.90589 1.51440 1.16810 1.85296 1.18169 0.99412 0.93235 0.87024 0.91914 1.21559 0.96556 1.01720 1.43256 0.92333 1.25858 0.98481 1.00732 0.92435 1.70772 1.06767 1.35594 1.39582 0.83517 0.74837 0.75381 0.76562 1.21293 1.21133 1.20779 1.20097 0.92158 0.92923 0.96755 1.20781 0.98330 0.95411 0.95073 1.20988 0.97050 0.99371 0.97648 1.20821 0.92969 1.01796 1.00838 1.20880 0.97420 0.98754 0.97636 1.20948 0.97302 0.98571 0.97793 0.91641 0.92179 0.92193 0.89420 0.88985 0.84812 0.84513 0.85138 0.85413 0.85412 0.76045 0.91546 0.87031 0.87416 0.87524 0.87437 0.87427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.48 37.16 0.35 -1.84 16 2 C 0.15 2.05 2.57 -67.93 -0.17 1.87 16 3 H 0.09 1.25 7.58 -51.93 -0.39 0.85 16 4 C -0.12 -1.23 4.76 -26.73 -0.13 -1.36 16 5 C -0.61 -5.14 5.69 37.16 0.21 -4.93 16 6 S 2.42 20.61 5.36 -107.50 -0.58 20.04 16 7 C -0.66 -3.61 10.62 101.05 1.07 -2.54 16 8 O -0.94 -11.80 18.10 -57.83 -1.05 -12.85 16 9 O -0.94 -11.09 18.10 -57.83 -1.05 -12.14 16 10 N -0.73 -12.04 4.43 -53.80 -0.24 -12.28 16 11 C 0.53 11.05 7.01 -10.98 -0.08 10.97 16 12 O -0.56 -12.87 15.09 5.56 0.08 -12.79 16 13 C 0.04 0.97 1.94 -94.07 -0.18 0.79 16 14 H 0.06 1.45 6.63 -51.93 -0.34 1.10 16 15 C -0.59 -14.50 7.45 -34.44 -0.26 -14.76 16 16 H 0.06 1.46 7.82 -52.49 -0.41 1.05 16 17 C 0.03 0.82 5.45 -17.82 -0.10 0.72 16 18 N -0.89 -24.14 13.63 55.43 0.76 -23.38 16 19 Si 1.07 23.12 29.91 -169.99 -5.08 18.04 16 20 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.29 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 23 C -0.02 -0.42 4.17 -104.63 -0.44 -0.85 16 24 C -0.08 -1.74 8.33 -39.59 -0.33 -2.07 16 25 C -0.13 -2.60 10.05 -39.59 -0.40 -3.00 16 26 C -0.15 -2.69 10.05 -39.59 -0.40 -3.08 16 27 C -0.13 -2.44 10.05 -39.58 -0.40 -2.84 16 28 C -0.13 -2.70 9.50 -39.58 -0.38 -3.08 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.14 1.13 7.75 -51.92 -0.40 0.72 16 36 H 0.13 0.59 8.14 -51.92 -0.42 0.17 16 37 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.40 6.39 8.49 -40.82 -0.35 6.05 16 40 H 0.27 7.26 6.48 -40.82 -0.26 7.00 16 41 H 0.11 2.55 7.88 -52.49 -0.41 2.14 16 42 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 43 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 44 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 45 H 0.11 2.12 7.96 -52.49 -0.42 1.71 16 LS Contribution 391.09 15.07 5.89 5.89 Total: -1.00 -35.25 391.09 -9.73 -44.98 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -6.86 Total: 10.48 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: -1.61 Total: -25.99 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.52 Total: -35.66 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -2.01 Total: -37.77 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.08 Total: 18.04 kcal Atomic # 16 Polarization: 20.61 SS G_CDS: -0.58 Total: 20.04 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.25 -9.73 -44.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361768405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.049 kcal (2) G-P(sol) polarization free energy of solvation -35.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds