Wall clock time and date at job start Wed Apr 1 2020 00:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47255 * 2 1 4 4 C 1.53002 * 109.47266 * 239.99833 * 2 1 3 5 5 C 1.53005 * 109.47098 * 175.00077 * 4 2 1 6 6 S 1.81401 * 109.47057 * 179.97438 * 5 4 2 7 7 C 1.81402 * 101.92121 * 179.97438 * 6 5 4 8 8 O 1.42093 * 108.57937 * 294.49252 * 6 5 4 9 9 O 1.42104 * 108.57156 * 65.51735 * 6 5 4 10 10 N 1.46501 * 109.47084 * 120.00002 * 2 1 3 11 11 C 1.34779 * 119.99662 * 275.00439 * 10 2 1 12 12 O 1.21280 * 120.00198 * 359.97438 * 11 10 2 13 13 C 1.50709 * 119.99756 * 180.02562 * 11 10 2 14 14 H 1.09000 * 109.47027 * 59.99194 * 13 11 10 15 15 C 1.50697 * 109.46544 * 299.99435 * 13 11 10 16 16 H 1.07995 * 120.00361 * 333.16802 * 15 13 11 17 17 C 1.37885 * 119.99590 * 153.17060 * 15 13 11 18 18 N 1.31513 * 119.99940 * 6.15164 * 17 15 13 19 19 Si 1.86807 * 119.99748 * 186.43242 * 17 15 13 20 20 H 1.48502 * 109.46673 * 269.72058 * 19 17 15 21 21 H 1.48498 * 109.47262 * 29.71845 * 19 17 15 22 22 H 1.48500 * 109.47035 * 149.72396 * 19 17 15 23 23 C 1.50697 * 109.46969 * 179.97438 * 13 11 10 24 24 C 1.38233 * 120.00580 * 66.38602 * 23 13 11 25 25 C 1.38229 * 120.00232 * 179.78832 * 24 23 13 26 26 C 1.38234 * 119.99914 * 0.44527 * 25 24 23 27 27 C 1.38228 * 120.00041 * 359.80679 * 26 25 24 28 28 C 1.38233 * 119.99478 * 246.66180 * 23 13 11 29 29 H 1.08997 * 109.47471 * 300.00323 * 1 2 3 30 30 H 1.09000 * 109.46536 * 60.00236 * 1 2 3 31 31 H 1.08995 * 109.47174 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46938 * 294.99995 * 4 2 1 33 33 H 1.08997 * 109.47229 * 55.00134 * 4 2 1 34 34 H 1.08997 * 109.47218 * 300.00332 * 5 4 2 35 35 H 1.09001 * 109.46673 * 60.00299 * 5 4 2 36 36 H 1.09007 * 109.46884 * 60.00182 * 7 6 5 37 37 H 1.08995 * 109.46965 * 179.97438 * 7 6 5 38 38 H 1.08996 * 109.46892 * 300.00757 * 7 6 5 39 39 H 0.97001 * 120.00216 * 94.99557 * 10 2 1 40 40 H 0.96992 * 119.99891 * 355.80870 * 18 17 15 41 41 H 1.08002 * 119.99342 * 359.97438 * 24 23 13 42 42 H 1.08000 * 120.00040 * 180.27839 * 25 24 23 43 43 H 1.08001 * 120.00097 * 179.83925 * 26 25 24 44 44 H 1.08003 * 120.00288 * 179.97438 * 27 26 25 45 45 H 1.08000 * 120.00245 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 16 4.1697 -1.4691 -2.7943 7 6 5.9615 -1.2164 -2.6676 8 8 3.8969 -2.8570 -2.6582 9 8 3.6955 -0.7780 -3.9419 10 7 2.0183 -0.6906 1.1962 11 6 2.1469 -0.0182 2.3572 12 8 1.8588 1.1586 2.4115 13 6 2.6498 -0.7285 3.5876 14 1 3.6491 -1.1203 3.3979 15 6 1.7204 -1.8653 3.9263 16 1 0.6817 -1.8191 3.6342 17 6 2.1962 -2.9646 4.6092 18 7 3.4277 -2.9696 5.0708 19 14 1.0941 -4.4499 4.8720 20 1 0.3518 -4.2956 6.1489 21 1 0.1291 -4.5553 3.7482 22 1 1.9252 -5.6792 4.9280 23 6 2.7009 0.2400 4.7410 24 6 1.5303 0.7679 5.2527 25 6 1.5769 1.6529 6.3136 26 6 2.7947 2.0170 6.8568 27 6 3.9656 1.4932 6.3418 28 6 3.9188 0.6048 5.2837 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7517 -1.7715 -1.2055 33 1 1.6055 -0.2618 -2.1370 34 1 3.8533 0.4369 -1.3572 35 1 3.9994 -1.0729 -0.4259 36 1 6.3260 -1.6575 -1.7398 37 1 6.4563 -1.6919 -3.5145 38 1 6.1789 -0.1483 -2.6720 39 1 2.2490 -1.6318 1.1527 40 1 4.0205 -2.2264 4.8788 41 1 0.5791 0.4866 4.8255 42 1 0.6620 2.0618 6.7162 43 1 2.8314 2.7105 7.6840 44 1 4.9172 1.7780 6.7660 45 1 4.8336 0.1955 4.8813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361768405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:43 Heat of formation + Delta-G solvation = -124.337448 kcal Electronic energy + Delta-G solvation = -27657.352748 eV Core-core repulsion = 23765.511406 eV Total energy + Delta-G solvation = -3891.841342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.07926 -39.60153 -37.97668 -37.46500 -37.00233 -35.85018 -33.37299 -32.63254 -31.63674 -31.11105 -30.27991 -28.78869 -25.74465 -25.26776 -23.30755 -23.02060 -21.74853 -21.22470 -19.76997 -19.23333 -17.89616 -17.70197 -17.45391 -17.16254 -16.93607 -16.77402 -16.24280 -15.80724 -15.63423 -15.29429 -15.10956 -14.82464 -14.50673 -14.36691 -14.07425 -13.99104 -13.92769 -13.86599 -13.70718 -13.29489 -13.11469 -13.05781 -13.01566 -12.85719 -12.81182 -12.59714 -12.43277 -12.12120 -11.95971 -11.91583 -11.89715 -11.78607 -11.27932 -10.91220 -10.60691 -10.49941 -9.95534 -9.65308 -9.33629 -8.61345 -6.36615 -0.91094 0.65648 0.71559 1.56755 1.62292 1.80142 1.87312 1.88462 2.46012 2.57233 2.71271 3.09480 3.14022 3.22564 3.57160 3.74664 3.85987 4.10577 4.11023 4.21324 4.22445 4.29470 4.33851 4.37554 4.39213 4.45903 4.57311 4.67080 4.68329 4.79045 4.84041 4.90770 4.95000 4.98660 5.05874 5.26393 5.27372 5.32585 5.66383 5.70120 5.73454 5.77138 6.06352 6.16729 6.31464 6.56343 6.72375 7.40169 7.48190 8.78040 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010799 B = 0.003509 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.103076 B = 7978.523995 C = 8874.192606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.079 0.921 4 C -0.121 4.121 5 C -0.611 4.611 6 S 2.436 3.564 7 C -0.643 4.643 8 O -0.984 6.984 9 O -0.979 6.979 10 N -0.714 5.714 11 C 0.534 3.466 12 O -0.588 6.588 13 C 0.041 3.959 14 H 0.051 0.949 15 C -0.587 4.587 16 H 0.046 0.954 17 C -0.007 4.007 18 N -0.920 5.920 19 Si 1.107 2.893 20 H -0.285 1.285 21 H -0.269 1.269 22 H -0.282 1.282 23 C -0.044 4.044 24 C -0.107 4.107 25 C -0.136 4.136 26 C -0.142 4.142 27 C -0.127 4.127 28 C -0.149 4.149 29 H 0.033 0.967 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.156 0.844 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.139 0.861 38 H 0.152 0.848 39 H 0.408 0.592 40 H 0.265 0.735 41 H 0.091 0.909 42 H 0.135 0.865 43 H 0.148 0.852 44 H 0.142 0.858 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.722 5.464 -11.099 12.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.097 0.903 4 C -0.159 4.159 5 C -0.740 4.740 6 S 2.623 3.377 7 C -0.795 4.795 8 O -0.981 6.981 9 O -0.976 6.976 10 N -0.365 5.365 11 C 0.323 3.677 12 O -0.469 6.469 13 C 0.020 3.980 14 H 0.069 0.931 15 C -0.625 4.625 16 H 0.064 0.936 17 C -0.209 4.209 18 N -0.556 5.556 19 Si 0.930 3.070 20 H -0.212 1.212 21 H -0.193 1.193 22 H -0.207 1.207 23 C -0.045 4.045 24 C -0.126 4.126 25 C -0.153 4.153 26 C -0.160 4.160 27 C -0.145 4.145 28 C -0.167 4.167 29 H 0.053 0.947 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.130 0.870 34 H 0.174 0.826 35 H 0.156 0.844 36 H 0.163 0.837 37 H 0.158 0.842 38 H 0.171 0.829 39 H 0.243 0.757 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.153 0.847 43 H 0.166 0.834 44 H 0.160 0.840 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.973 4.346 -11.059 12.249 hybrid contribution 0.551 1.315 0.111 1.430 sum 3.524 5.661 -10.948 12.819 Atomic orbital electron populations 1.22174 0.95100 1.02582 1.02225 1.20926 0.94277 0.96977 0.83611 0.90266 1.21683 0.91960 1.03264 0.99041 1.30349 1.05832 1.16588 1.21264 1.07120 0.79666 0.74551 0.76372 1.30124 1.22059 1.13988 1.13332 1.93556 1.84879 1.32612 1.87095 1.93540 1.80443 1.75983 1.47645 1.45983 1.67259 1.14366 1.08931 1.20985 0.75647 0.85959 0.85143 1.90560 1.52805 1.17738 1.85817 1.18119 0.98376 0.93130 0.88394 0.93064 1.21628 0.96116 1.02325 1.42385 0.93574 1.26908 0.98860 1.02959 0.92196 1.70855 1.07573 1.35735 1.41400 0.83032 0.73912 0.72990 0.77038 1.21167 1.19329 1.20742 1.20173 0.93180 0.93952 0.97188 1.20804 0.97398 0.97450 0.96909 1.21347 0.99098 0.98309 0.96590 1.21299 0.91970 1.01511 1.01213 1.21320 0.99412 0.97339 0.96431 1.21162 0.96849 0.99704 0.98974 0.94729 0.89253 0.91883 0.89339 0.87005 0.82591 0.84380 0.83672 0.84225 0.82943 0.75650 0.92351 0.89036 0.84734 0.83432 0.83997 0.87117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.32 9.48 71.98 0.68 -3.64 16 2 C 0.15 3.98 2.57 44.99 0.12 4.09 16 3 H 0.08 2.28 7.58 -2.38 -0.02 2.26 16 4 C -0.12 -2.41 4.76 30.60 0.15 -2.26 16 5 C -0.61 -9.52 5.69 71.98 0.41 -9.11 16 6 S 2.44 38.82 5.36 -56.49 -0.30 38.51 16 7 C -0.64 -5.23 10.62 113.37 1.20 -4.03 16 8 O -0.98 -24.65 18.10 -127.37 -2.31 -26.96 16 9 O -0.98 -22.11 18.10 -127.37 -2.30 -24.42 16 10 N -0.71 -24.08 4.43 -442.51 -1.96 -26.04 16 11 C 0.53 22.80 7.01 87.66 0.61 23.41 16 12 O -0.59 -27.73 15.09 -3.03 -0.05 -27.77 16 13 C 0.04 1.93 1.94 -13.03 -0.03 1.90 16 14 H 0.05 2.47 6.63 -2.39 -0.02 2.46 16 15 C -0.59 -29.52 7.45 25.60 0.19 -29.33 16 16 H 0.05 2.38 7.82 -2.91 -0.02 2.36 16 17 C -0.01 -0.38 5.45 84.66 0.46 0.08 16 18 N -0.92 -50.66 13.63 21.45 0.29 -50.37 16 19 Si 1.11 46.89 29.91 68.60 2.05 48.95 16 20 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 22 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 23 C -0.04 -2.05 4.17 -19.87 -0.08 -2.13 16 24 C -0.11 -4.89 8.33 22.27 0.19 -4.71 16 25 C -0.14 -5.16 10.05 22.27 0.22 -4.94 16 26 C -0.14 -4.83 10.05 22.27 0.22 -4.61 16 27 C -0.13 -4.55 10.05 22.27 0.22 -4.33 16 28 C -0.15 -6.29 9.50 22.27 0.21 -6.08 16 29 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 33 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.16 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.14 2.14 7.75 -2.39 -0.02 2.12 16 36 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.15 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.41 13.14 8.49 -92.71 -0.79 12.36 16 40 H 0.27 14.56 6.48 -92.71 -0.60 13.96 16 41 H 0.09 4.40 7.88 -2.91 -0.02 4.37 16 42 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 43 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 44 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 45 H 0.11 4.45 7.96 -2.91 -0.02 4.43 16 Total: -1.00 -78.21 391.09 0.58 -77.64 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: 0.37 Total: 36.14 kcal Atomic # 6 Polarization: -50.46 SS G_CDS: 4.78 Total: -45.68 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -1.67 Total: -76.41 kcal Atomic # 8 Polarization: -74.49 SS G_CDS: -4.66 Total: -79.15 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.05 Total: 48.95 kcal Atomic # 16 Polarization: 38.82 SS G_CDS: -0.30 Total: 38.51 kcal Total: -78.21 0.58 -77.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361768405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.699 kcal (2) G-P(sol) polarization free energy of solvation -78.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds