Wall clock time and date at job start Tue Mar 31 2020 23:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.00292 * 2 1 4 4 C 1.54329 * 109.88272 * 121.09810 * 2 1 3 5 5 H 1.09002 * 110.72032 * 215.58441 * 4 2 1 6 6 C 1.52999 * 110.87192 * 338.78875 * 4 2 1 7 7 O 1.42896 * 109.47090 * 182.45397 * 6 4 2 8 8 C 1.55162 * 102.94140 * 97.22106 * 4 2 1 9 9 C 1.54904 * 101.58121 * 35.50310 * 8 4 2 10 10 N 1.47024 * 109.88108 * 238.90148 * 2 1 3 11 11 S 1.65601 * 125.64545 * 59.55885 * 10 2 1 12 12 O 1.42109 * 106.40328 * 23.52416 * 11 10 2 13 13 O 1.42099 * 106.40100 * 156.44119 * 11 10 2 14 14 C 1.76196 * 107.21958 * 269.98329 * 11 10 2 15 15 C 1.38234 * 120.00033 * 269.72643 * 14 11 10 16 16 C 1.38234 * 119.99797 * 179.74706 * 15 14 11 17 17 C 1.38230 * 120.00007 * 0.52927 * 16 15 14 18 18 C 1.50709 * 120.00021 * 179.77429 * 17 16 15 19 19 C 1.50706 * 109.46527 * 269.97223 * 18 17 16 20 20 H 1.07996 * 120.00029 * 0.02562 * 19 18 17 21 21 C 1.37871 * 119.99398 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00599 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99897 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46943 * 89.99646 * 23 21 19 25 25 H 1.48492 * 109.47496 * 210.00268 * 23 21 19 26 26 H 1.48500 * 109.46991 * 330.00336 * 23 21 19 27 27 C 1.38233 * 120.00123 * 359.74523 * 17 16 15 28 28 C 1.38236 * 120.00172 * 359.97438 * 27 17 16 29 29 H 1.09001 * 109.46858 * 298.90106 * 1 2 3 30 30 H 1.08999 * 109.47027 * 58.90393 * 1 2 3 31 31 H 1.09000 * 109.47467 * 178.90865 * 1 2 3 32 32 H 1.09001 * 109.47140 * 302.45187 * 6 4 2 33 33 H 1.08997 * 109.47368 * 62.44928 * 6 4 2 34 34 H 0.96702 * 114.00406 * 179.97438 * 7 6 4 35 35 H 1.09000 * 110.99946 * 153.57687 * 8 4 2 36 36 H 1.08995 * 111.00204 * 277.38470 * 8 4 2 37 37 H 1.08998 * 110.36955 * 81.82737 * 9 8 4 38 38 H 1.09000 * 110.36921 * 204.03941 * 9 8 4 39 39 H 1.08003 * 119.99735 * 359.97438 * 15 14 11 40 40 H 1.08002 * 120.00183 * 180.29628 * 16 15 14 41 41 H 1.08997 * 109.47058 * 29.96792 * 18 17 16 42 42 H 1.09000 * 109.46857 * 149.97645 * 18 17 16 43 43 H 0.96996 * 120.00627 * 179.97438 * 22 21 19 44 44 H 1.08007 * 120.00424 * 180.02562 * 27 17 16 45 45 H 1.07997 * 119.99896 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0549 -0.7496 1.2427 5 1 2.9658 -0.2833 1.6182 6 6 0.9870 -0.8056 2.3369 7 8 1.5223 -1.4542 3.4922 8 6 2.3518 -2.1696 0.6923 9 6 2.8567 -1.8499 -0.7368 10 7 2.0300 -0.7141 -1.1839 11 16 1.7170 -0.3092 -2.7588 12 8 1.3898 1.0737 -2.7602 13 8 2.7752 -0.8582 -3.5322 14 6 0.2542 -1.1670 -3.2371 15 6 0.3442 -2.4265 -3.7998 16 6 -0.8038 -3.1016 -4.1702 17 6 -2.0411 -2.5128 -3.9881 18 6 -3.2923 -3.2468 -4.3966 19 6 -3.6255 -2.9133 -5.8281 20 1 -2.9941 -2.2378 -6.3862 21 6 -4.7357 -3.4713 -6.4253 22 7 -5.5038 -4.2950 -5.7462 23 14 -5.1484 -3.0586 -8.1999 24 1 -4.4813 -4.0311 -9.1023 25 1 -6.6187 -3.1295 -8.3956 26 1 -4.6731 -1.6868 -8.5124 27 6 -2.1308 -1.2510 -3.4307 28 6 -0.9832 -0.5782 -3.0549 29 1 -0.3633 0.4967 0.8997 30 1 -0.3633 0.5308 -0.8800 31 1 -0.3634 -1.0275 -0.0196 32 1 0.6810 0.2075 2.5981 33 1 0.1239 -1.3636 1.9741 34 1 0.8988 -1.5249 4.2280 35 1 3.1270 -2.6619 1.2795 36 1 1.4453 -2.7739 0.6610 37 1 3.9091 -1.5668 -0.7129 38 1 2.7105 -2.7087 -1.3918 39 1 1.3113 -2.8844 -3.9465 40 1 -0.7338 -4.0876 -4.6054 41 1 -3.1310 -4.3206 -4.3019 42 1 -4.1176 -2.9449 -3.7517 43 1 -6.2851 -4.6873 -6.1663 44 1 -3.0975 -0.7911 -3.2880 45 1 -1.0533 0.4078 -2.6198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363878060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:10 Heat of formation + Delta-G solvation = -105.102610 kcal Electronic energy + Delta-G solvation = -27861.807521 eV Core-core repulsion = 23970.800264 eV Total energy + Delta-G solvation = -3891.007257 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.68818 -38.82230 -37.19725 -36.74163 -35.77888 -33.70515 -32.19764 -31.62938 -31.33415 -30.57813 -27.45512 -26.80733 -24.95494 -23.74758 -22.55425 -22.27147 -20.86049 -20.03068 -18.84401 -18.09751 -17.86399 -17.19817 -16.46747 -16.25806 -15.68132 -15.17729 -14.98114 -14.69218 -14.43132 -14.33040 -14.07303 -13.87630 -13.63410 -13.24967 -13.02699 -12.86951 -12.77600 -12.61611 -12.27051 -12.06362 -12.04112 -11.94512 -11.72166 -11.50922 -11.48332 -11.25506 -11.05449 -10.97385 -10.90200 -10.86493 -10.53481 -10.48843 -10.22628 -9.76587 -9.68282 -9.20749 -8.60448 -8.55484 -8.39074 -6.18892 -4.23985 0.41363 1.31825 1.77619 2.97197 3.23099 3.29699 3.34109 3.68737 3.77237 4.06207 4.15900 4.29352 4.36494 4.46526 4.65326 4.86100 4.97663 5.00427 5.06019 5.12326 5.16428 5.19102 5.21379 5.25804 5.35421 5.45034 5.57704 5.67948 5.71054 5.74198 5.76650 5.89214 5.93499 6.00434 6.05828 6.23047 6.26556 6.31312 6.51066 6.81921 6.88714 7.26287 7.27130 7.41141 7.56904 7.76194 8.11369 8.80836 9.41153 10.91123 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016753 B = 0.002951 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.973658 B = 9486.664988 C =10273.806265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.158 3.842 3 H 0.085 0.915 4 C -0.093 4.093 5 H 0.091 0.909 6 C 0.083 3.917 7 O -0.575 6.575 8 C -0.119 4.119 9 C 0.119 3.881 10 N -1.009 6.009 11 S 2.709 3.291 12 O -0.960 6.960 13 O -0.960 6.960 14 C -0.703 4.703 15 C -0.022 4.022 16 C -0.145 4.145 17 C 0.027 3.973 18 C 0.040 3.960 19 C -0.518 4.518 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.892 5.892 23 Si 0.898 3.102 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.272 1.272 27 C -0.145 4.145 28 C -0.023 4.023 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.380 0.620 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.264 0.736 44 H 0.128 0.872 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.839 5.826 17.592 23.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.052 3.948 3 H 0.103 0.897 4 C -0.113 4.113 5 H 0.110 0.890 6 C 0.005 3.995 7 O -0.380 6.380 8 C -0.158 4.158 9 C -0.006 4.006 10 N -0.846 5.846 11 S 2.804 3.196 12 O -0.951 6.951 13 O -0.951 6.951 14 C -0.793 4.793 15 C -0.042 4.042 16 C -0.164 4.164 17 C 0.026 3.974 18 C 0.003 3.997 19 C -0.556 4.556 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.530 5.530 23 Si 0.726 3.274 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.164 4.164 28 C -0.042 4.042 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.227 0.773 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.146 0.854 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 14.716 6.283 16.578 23.040 hybrid contribution -1.565 -0.284 -0.695 1.736 sum 13.151 5.999 15.883 21.476 Atomic orbital electron populations 1.22619 0.95039 1.03510 1.03669 1.21178 0.94079 0.95738 0.83787 0.89749 1.22180 0.99130 0.96938 0.93047 0.89020 1.22302 0.95358 0.96230 0.85600 1.86443 1.44001 1.81767 1.25804 1.22795 1.02349 0.96102 0.94533 1.22019 0.94569 0.88066 0.95907 1.58809 1.63094 1.40977 1.21734 1.01265 0.73873 0.73489 0.70936 1.93547 1.85315 1.30464 1.85735 1.93554 1.53913 1.80326 1.67299 1.30381 1.17495 1.10265 1.21116 1.20756 0.99053 0.91722 0.92671 1.21238 0.91902 1.01108 1.02152 1.21108 0.97211 0.93085 0.85951 1.18536 0.88595 0.95471 0.97101 1.20971 1.10363 1.28353 0.95888 0.92288 1.24998 0.95937 0.94807 0.98370 1.69940 1.15820 1.30290 1.36936 0.86481 0.77555 0.79038 0.84356 1.20435 1.21016 1.19686 1.21230 0.98240 0.95540 1.01400 1.20779 0.91187 0.97888 0.94369 0.90580 0.91333 0.91035 0.93207 0.92613 0.77269 0.89664 0.90381 0.91027 0.90369 0.85390 0.85368 0.94739 0.94742 0.92618 0.85392 0.85334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.72 7.77 37.16 0.29 -1.43 16 2 C 0.16 1.47 3.40 -66.95 -0.23 1.25 16 3 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.09 -0.72 3.14 -88.78 -0.28 -1.00 16 5 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 6 C 0.08 0.55 5.17 37.16 0.19 0.74 16 7 O -0.57 -4.10 13.55 -35.23 -0.48 -4.58 16 8 C -0.12 -0.94 6.43 -24.58 -0.16 -1.10 16 9 C 0.12 1.11 6.98 -2.53 -0.02 1.09 16 10 N -1.01 -11.27 3.41 -104.42 -0.36 -11.63 16 11 S 2.71 39.68 5.47 -107.50 -0.59 39.09 16 12 O -0.96 -15.82 16.49 -57.17 -0.94 -16.76 16 13 O -0.96 -16.14 16.86 -57.17 -0.96 -17.10 16 14 C -0.70 -11.19 5.97 -39.58 -0.24 -11.43 16 15 C -0.02 -0.37 9.52 -39.58 -0.38 -0.75 16 16 C -0.15 -2.68 9.70 -39.59 -0.38 -3.07 16 17 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 18 C 0.04 0.97 5.10 -29.03 -0.15 0.82 16 19 C -0.52 -14.00 9.09 -34.44 -0.31 -14.31 16 20 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 23 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 26 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 27 C -0.15 -2.66 9.70 -39.58 -0.38 -3.05 16 28 C -0.02 -0.37 8.52 -39.58 -0.34 -0.71 16 29 H 0.08 0.51 6.61 -51.93 -0.34 0.17 16 30 H 0.07 0.71 5.12 -51.93 -0.27 0.45 16 31 H 0.07 0.66 7.61 -51.93 -0.40 0.27 16 32 H 0.05 0.27 7.46 -51.93 -0.39 -0.11 16 33 H 0.06 0.36 6.76 -51.93 -0.35 0.01 16 34 H 0.38 1.14 9.12 45.56 0.42 1.56 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.64 7.98 -51.93 -0.41 0.23 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.13 1.82 7.61 -52.48 -0.40 1.42 16 40 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 41 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 42 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.13 2.22 8.06 -52.48 -0.42 1.80 16 45 H 0.13 1.80 6.10 -52.49 -0.32 1.48 16 LS Contribution 374.37 15.07 5.64 5.64 Total: -1.00 -33.50 374.37 -10.78 -44.28 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.80 Total: 1.02 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: -3.01 Total: -31.35 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.38 Total: -36.32 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -2.38 Total: -38.44 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 39.68 SS G_CDS: -0.59 Total: 39.09 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.50 -10.78 -44.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363878060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.818 kcal (2) G-P(sol) polarization free energy of solvation -33.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds