Wall clock time and date at job start Tue Mar 31 2020 23:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.00292 * 2 1 4 4 C 1.54329 * 109.88272 * 121.09810 * 2 1 3 5 5 H 1.09002 * 110.72032 * 215.58441 * 4 2 1 6 6 C 1.52999 * 110.87192 * 338.78875 * 4 2 1 7 7 O 1.42896 * 109.47090 * 182.45397 * 6 4 2 8 8 C 1.55162 * 102.94140 * 97.22106 * 4 2 1 9 9 C 1.54904 * 101.58121 * 35.50310 * 8 4 2 10 10 N 1.47024 * 109.88108 * 238.90148 * 2 1 3 11 11 S 1.65601 * 125.64545 * 59.55885 * 10 2 1 12 12 O 1.42109 * 106.40328 * 23.52416 * 11 10 2 13 13 O 1.42099 * 106.40100 * 156.44119 * 11 10 2 14 14 C 1.76196 * 107.21958 * 269.98329 * 11 10 2 15 15 C 1.38234 * 120.00033 * 269.72643 * 14 11 10 16 16 C 1.38234 * 119.99797 * 179.74706 * 15 14 11 17 17 C 1.38230 * 120.00007 * 0.52927 * 16 15 14 18 18 C 1.50709 * 120.00021 * 179.77429 * 17 16 15 19 19 C 1.50706 * 109.46527 * 269.97223 * 18 17 16 20 20 H 1.07996 * 120.00029 * 0.02562 * 19 18 17 21 21 C 1.37871 * 119.99398 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00599 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99897 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46943 * 89.99646 * 23 21 19 25 25 H 1.48492 * 109.47496 * 210.00268 * 23 21 19 26 26 H 1.48500 * 109.46991 * 330.00336 * 23 21 19 27 27 C 1.38233 * 120.00123 * 359.74523 * 17 16 15 28 28 C 1.38236 * 120.00172 * 359.97438 * 27 17 16 29 29 H 1.09001 * 109.46858 * 298.90106 * 1 2 3 30 30 H 1.08999 * 109.47027 * 58.90393 * 1 2 3 31 31 H 1.09000 * 109.47467 * 178.90865 * 1 2 3 32 32 H 1.09001 * 109.47140 * 302.45187 * 6 4 2 33 33 H 1.08997 * 109.47368 * 62.44928 * 6 4 2 34 34 H 0.96702 * 114.00406 * 179.97438 * 7 6 4 35 35 H 1.09000 * 110.99946 * 153.57687 * 8 4 2 36 36 H 1.08995 * 111.00204 * 277.38470 * 8 4 2 37 37 H 1.08998 * 110.36955 * 81.82737 * 9 8 4 38 38 H 1.09000 * 110.36921 * 204.03941 * 9 8 4 39 39 H 1.08003 * 119.99735 * 359.97438 * 15 14 11 40 40 H 1.08002 * 120.00183 * 180.29628 * 16 15 14 41 41 H 1.08997 * 109.47058 * 29.96792 * 18 17 16 42 42 H 1.09000 * 109.46857 * 149.97645 * 18 17 16 43 43 H 0.96996 * 120.00627 * 179.97438 * 22 21 19 44 44 H 1.08007 * 120.00424 * 180.02562 * 27 17 16 45 45 H 1.07997 * 119.99896 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0549 -0.7496 1.2427 5 1 2.9658 -0.2833 1.6182 6 6 0.9870 -0.8056 2.3369 7 8 1.5223 -1.4542 3.4922 8 6 2.3518 -2.1696 0.6923 9 6 2.8567 -1.8499 -0.7368 10 7 2.0300 -0.7141 -1.1839 11 16 1.7170 -0.3092 -2.7588 12 8 1.3898 1.0737 -2.7602 13 8 2.7752 -0.8582 -3.5322 14 6 0.2542 -1.1670 -3.2371 15 6 0.3442 -2.4265 -3.7998 16 6 -0.8038 -3.1016 -4.1702 17 6 -2.0411 -2.5128 -3.9881 18 6 -3.2923 -3.2468 -4.3966 19 6 -3.6255 -2.9133 -5.8281 20 1 -2.9941 -2.2378 -6.3862 21 6 -4.7357 -3.4713 -6.4253 22 7 -5.5038 -4.2950 -5.7462 23 14 -5.1484 -3.0586 -8.1999 24 1 -4.4813 -4.0311 -9.1023 25 1 -6.6187 -3.1295 -8.3956 26 1 -4.6731 -1.6868 -8.5124 27 6 -2.1308 -1.2510 -3.4307 28 6 -0.9832 -0.5782 -3.0549 29 1 -0.3633 0.4967 0.8997 30 1 -0.3633 0.5308 -0.8800 31 1 -0.3634 -1.0275 -0.0196 32 1 0.6810 0.2075 2.5981 33 1 0.1239 -1.3636 1.9741 34 1 0.8988 -1.5249 4.2280 35 1 3.1270 -2.6619 1.2795 36 1 1.4453 -2.7739 0.6610 37 1 3.9091 -1.5668 -0.7129 38 1 2.7105 -2.7087 -1.3918 39 1 1.3113 -2.8844 -3.9465 40 1 -0.7338 -4.0876 -4.6054 41 1 -3.1310 -4.3206 -4.3019 42 1 -4.1176 -2.9449 -3.7517 43 1 -6.2851 -4.6873 -6.1663 44 1 -3.0975 -0.7911 -3.2880 45 1 -1.0533 0.4078 -2.6198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363878060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:09 Heat of formation + Delta-G solvation = -128.751151 kcal Electronic energy + Delta-G solvation = -27862.832999 eV Core-core repulsion = 23970.800264 eV Total energy + Delta-G solvation = -3892.032735 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.40421 -40.22686 -38.44234 -37.27756 -37.03437 -35.61606 -33.36106 -32.91195 -32.16985 -31.87341 -29.26390 -27.47690 -25.67658 -25.51420 -23.79185 -23.22016 -22.41805 -20.77301 -19.86154 -19.16999 -18.61662 -18.49022 -18.23170 -17.14478 -16.90389 -16.62615 -16.02682 -15.96770 -15.63133 -15.34080 -15.14155 -14.84430 -14.62732 -14.57473 -14.29501 -13.98880 -13.70240 -13.61238 -13.43879 -13.41572 -13.32473 -13.24544 -13.18951 -12.81646 -12.69850 -12.67965 -12.33612 -12.15629 -12.05611 -11.84750 -11.69913 -11.66482 -11.46367 -11.41595 -10.71188 -10.66408 -10.12981 -9.97956 -9.90817 -8.28173 -6.40903 -0.75074 -0.08496 0.37689 1.37534 1.37911 1.49298 1.89929 2.33816 2.54617 2.76728 3.01317 3.04534 3.30676 3.58674 3.72684 3.82934 3.91884 4.02651 4.13581 4.22523 4.37532 4.39072 4.44423 4.45669 4.48049 4.56914 4.65915 4.71410 4.78072 4.79747 4.88653 4.95309 5.03411 5.07935 5.13415 5.22246 5.24305 5.25228 5.27628 5.32167 5.39429 5.49936 5.66040 5.84522 5.90212 6.08614 6.70820 6.97612 7.28279 8.81863 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016753 B = 0.002951 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.973658 B = 9486.664988 C =10273.806265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.152 3.848 3 H 0.090 0.910 4 C -0.089 4.089 5 H 0.097 0.903 6 C 0.083 3.917 7 O -0.591 6.591 8 C -0.114 4.114 9 C 0.109 3.891 10 N -1.005 6.005 11 S 2.730 3.270 12 O -0.977 6.977 13 O -0.981 6.981 14 C -0.700 4.700 15 C -0.019 4.019 16 C -0.153 4.153 17 C -0.001 4.001 18 C 0.049 3.951 19 C -0.534 4.534 20 H 0.053 0.947 21 C 0.011 3.989 22 N -0.925 5.925 23 Si 0.963 3.037 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.268 1.268 27 C -0.152 4.152 28 C -0.016 4.016 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.397 0.603 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.152 0.848 40 H 0.130 0.870 41 H 0.013 0.987 42 H 0.014 0.986 43 H 0.268 0.732 44 H 0.131 0.869 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.233 6.876 18.513 24.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.046 3.954 3 H 0.108 0.892 4 C -0.109 4.109 5 H 0.115 0.885 6 C 0.006 3.994 7 O -0.400 6.400 8 C -0.153 4.153 9 C -0.015 4.015 10 N -0.844 5.844 11 S 2.824 3.176 12 O -0.968 6.968 13 O -0.971 6.971 14 C -0.788 4.788 15 C -0.038 4.038 16 C -0.172 4.172 17 C -0.002 4.002 18 C 0.012 3.988 19 C -0.572 4.572 20 H 0.071 0.929 21 C -0.188 4.188 22 N -0.564 5.564 23 Si 0.787 3.213 24 H -0.197 1.197 25 H -0.203 1.203 26 H -0.193 1.193 27 C -0.171 4.171 28 C -0.035 4.035 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.247 0.753 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.170 0.830 40 H 0.148 0.852 41 H 0.032 0.968 42 H 0.033 0.967 43 H 0.076 0.924 44 H 0.149 0.851 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 16.090 7.324 17.503 24.877 hybrid contribution -1.896 -0.587 -0.835 2.154 sum 14.194 6.737 16.668 22.906 Atomic orbital electron populations 1.22674 0.94896 1.03378 1.04278 1.21400 0.94301 0.96080 0.83570 0.89197 1.22163 0.99684 0.96381 0.92644 0.88496 1.22287 0.94766 0.97076 0.85302 1.86389 1.45196 1.81880 1.26528 1.22772 1.02466 0.96331 0.93713 1.22290 0.94971 0.87506 0.96751 1.58564 1.63043 1.41841 1.20966 1.00563 0.72894 0.72717 0.71462 1.93522 1.85382 1.31419 1.86429 1.93526 1.54210 1.80576 1.68792 1.30805 1.18321 1.09908 1.19718 1.20983 0.99266 0.91819 0.91773 1.21286 0.91937 1.01478 1.02526 1.20810 0.96278 0.94241 0.88831 1.18260 0.90061 0.94634 0.95827 1.21288 1.10452 1.28154 0.97320 0.92867 1.25843 0.95813 0.94613 1.02570 1.70045 1.16347 1.31262 1.38739 0.85475 0.77565 0.78914 0.79310 1.19710 1.20259 1.19270 1.21285 0.99359 0.94969 1.01508 1.20995 0.90454 0.98594 0.93441 0.88093 0.92748 0.91449 0.91766 0.92574 0.75298 0.88587 0.90772 0.89817 0.90151 0.83019 0.85239 0.96847 0.96736 0.92352 0.85139 0.82953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.10 7.77 71.98 0.56 -2.54 16 2 C 0.15 2.47 3.40 45.34 0.15 2.62 16 3 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 4 C -0.09 -1.14 3.14 -9.60 -0.03 -1.17 16 5 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 6 C 0.08 0.89 5.17 71.98 0.37 1.26 16 7 O -0.59 -6.95 13.55 -148.98 -2.02 -8.97 16 8 C -0.11 -1.54 6.43 31.99 0.21 -1.33 16 9 C 0.11 1.78 6.98 86.85 0.61 2.39 16 10 N -1.00 -20.37 3.41 -484.28 -1.65 -22.03 16 11 S 2.73 75.24 5.47 -56.49 -0.31 74.93 16 12 O -0.98 -30.47 16.49 -128.00 -2.11 -32.58 16 13 O -0.98 -31.26 16.86 -128.00 -2.16 -33.42 16 14 C -0.70 -21.37 5.97 22.27 0.13 -21.24 16 15 C -0.02 -0.61 9.52 22.27 0.21 -0.40 16 16 C -0.15 -5.73 9.70 22.27 0.22 -5.51 16 17 C 0.00 -0.05 5.07 -19.86 -0.10 -0.15 16 18 C 0.05 2.50 5.10 29.11 0.15 2.65 16 19 C -0.53 -29.69 9.09 25.60 0.23 -29.46 16 20 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 21 C 0.01 0.60 5.46 84.65 0.46 1.06 16 22 N -0.92 -53.93 13.29 21.44 0.28 -53.64 16 23 Si 0.96 43.53 29.54 68.60 2.03 45.56 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 27 C -0.15 -5.62 9.70 22.27 0.22 -5.41 16 28 C -0.02 -0.50 8.52 22.27 0.19 -0.31 16 29 H 0.10 1.07 6.61 -2.39 -0.02 1.06 16 30 H 0.05 1.02 5.12 -2.39 -0.01 1.01 16 31 H 0.07 1.13 7.61 -2.39 -0.02 1.11 16 32 H 0.06 0.50 7.46 -2.39 -0.02 0.48 16 33 H 0.06 0.59 6.76 -2.39 -0.02 0.58 16 34 H 0.40 1.45 9.12 -74.06 -0.68 0.77 16 35 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.07 7.98 -2.39 -0.02 1.05 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.15 4.06 7.61 -2.91 -0.02 4.03 16 40 H 0.13 4.67 8.06 -2.91 -0.02 4.64 16 41 H 0.01 0.71 8.08 -2.39 -0.02 0.69 16 42 H 0.01 0.77 8.09 -2.39 -0.02 0.75 16 43 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 44 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 45 H 0.15 4.01 6.10 -2.91 -0.02 3.99 16 Total: -1.00 -71.83 374.37 -2.03 -73.86 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.33 Total: 13.83 kcal Atomic # 6 Polarization: -61.12 SS G_CDS: 3.58 Total: -57.55 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -1.37 Total: -75.67 kcal Atomic # 8 Polarization: -68.68 SS G_CDS: -6.29 Total: -74.96 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 75.24 SS G_CDS: -0.31 Total: 74.93 kcal Total: -71.83 -2.03 -73.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363878060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.893 kcal (2) G-P(sol) polarization free energy of solvation -71.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds