Wall clock time and date at job start Tue Mar 31 2020 23:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.99872 * 2 1 4 4 C 1.54315 * 109.98788 * 238.96767 * 2 1 3 5 5 H 1.08995 * 110.92460 * 144.63239 * 4 2 1 6 6 C 1.53003 * 110.74117 * 21.37545 * 4 2 1 7 7 O 1.42894 * 109.47042 * 180.10716 * 6 4 2 8 8 C 1.55162 * 102.86150 * 263.04823 * 4 2 1 9 9 C 1.54907 * 101.58350 * 324.30208 * 8 4 2 10 10 N 1.47027 * 109.88073 * 121.08980 * 2 1 3 11 11 S 1.65595 * 125.64979 * 300.51395 * 10 2 1 12 12 O 1.42103 * 106.40132 * 156.17916 * 11 10 2 13 13 O 1.42104 * 106.40409 * 23.25677 * 11 10 2 14 14 C 1.76202 * 107.21980 * 269.71690 * 11 10 2 15 15 C 1.38235 * 120.00249 * 89.99626 * 14 11 10 16 16 C 1.38234 * 120.00220 * 179.97438 * 15 14 11 17 17 C 1.38233 * 120.00037 * 0.28719 * 16 15 14 18 18 C 1.50693 * 120.00207 * 179.72405 * 17 16 15 19 19 C 1.50709 * 109.47444 * 89.99457 * 18 17 16 20 20 H 1.07999 * 119.99476 * 0.02562 * 19 18 17 21 21 C 1.37873 * 120.00210 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99914 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00074 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47133 * 59.99916 * 23 21 19 25 25 H 1.48496 * 109.47035 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47085 * 300.00229 * 23 21 19 27 27 C 1.38238 * 119.99747 * 359.50225 * 17 16 15 28 28 C 1.38234 * 120.00083 * 0.44989 * 27 17 16 29 29 H 1.09008 * 109.46946 * 300.36519 * 1 2 3 30 30 H 1.09000 * 109.47214 * 60.35804 * 1 2 3 31 31 H 1.08998 * 109.47123 * 180.36201 * 1 2 3 32 32 H 1.08993 * 109.47442 * 300.11204 * 6 4 2 33 33 H 1.09000 * 109.46550 * 60.10982 * 6 4 2 34 34 H 0.96695 * 114.00095 * 180.02562 * 7 6 4 35 35 H 1.08999 * 111.00259 * 206.22526 * 8 4 2 36 36 H 1.08999 * 111.00108 * 82.37409 * 8 4 2 37 37 H 1.08993 * 110.36810 * 278.17335 * 9 8 4 38 38 H 1.08996 * 110.46078 * 155.89719 * 9 8 4 39 39 H 1.07999 * 119.99770 * 359.97438 * 15 14 11 40 40 H 1.08002 * 119.99744 * 180.02562 * 16 15 14 41 41 H 1.09000 * 109.47097 * 209.99342 * 18 17 16 42 42 H 1.09001 * 109.47081 * 329.99847 * 18 17 16 43 43 H 0.97001 * 119.99867 * 179.97438 * 22 21 19 44 44 H 1.07999 * 119.99927 * 180.28388 * 27 17 16 45 45 H 1.08002 * 120.00281 * 179.83134 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0574 -0.7476 -1.2426 5 1 2.9707 -0.2850 -1.6167 6 6 0.9905 -0.7980 -2.3381 7 8 1.5057 -1.4970 -3.4729 8 6 2.3476 -2.1693 -0.6930 9 6 2.8523 -1.8530 0.7369 10 7 2.0300 -0.7140 1.1840 11 16 1.7156 -0.3099 2.7589 12 8 1.8851 -1.4982 3.5195 13 8 0.5088 0.4402 2.7475 14 6 2.9848 0.7974 3.2765 15 6 2.8235 2.1601 3.1098 16 6 3.8189 3.0288 3.5164 17 6 4.9782 2.5345 4.0843 18 6 6.0660 3.4811 4.5219 19 6 5.8348 3.8839 5.9557 20 1 4.9853 3.4931 6.4960 21 6 6.7077 4.7512 6.5774 22 7 7.7419 5.2275 5.9192 23 14 6.4207 5.2510 8.3543 24 1 6.4396 4.0429 9.2176 25 1 7.4920 6.1847 8.7851 26 1 5.1018 5.9233 8.4725 27 6 5.1376 1.1720 4.2551 28 6 4.1418 0.3033 3.8494 29 1 -0.3633 0.5195 0.8868 30 1 -0.3634 0.5083 -0.8932 31 1 -0.3633 -1.0276 0.0065 32 1 0.1081 -1.3158 -1.9623 33 1 0.7199 0.2171 -2.6286 34 1 0.8817 -1.5672 -4.2082 35 1 3.1212 -2.6646 -1.2798 36 1 1.4382 -2.7694 -0.6625 37 1 3.9058 -1.5746 0.7144 38 1 2.7012 -2.7105 1.3927 39 1 1.9198 2.5461 2.6618 40 1 3.6927 4.0936 3.3864 41 1 7.0339 2.9874 4.4348 42 1 6.0522 4.3681 3.8886 43 1 8.3558 5.8380 6.3566 44 1 6.0414 0.7860 4.7030 45 1 4.2675 -0.7613 3.9803 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363878081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:19 Heat of formation + Delta-G solvation = -104.864943 kcal Electronic energy + Delta-G solvation = -27523.452916 eV Core-core repulsion = 23632.455965 eV Total energy + Delta-G solvation = -3890.996951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.67959 -38.80314 -37.20874 -36.76391 -35.78772 -33.68438 -32.17534 -31.55928 -31.32035 -30.58281 -27.44603 -26.78219 -24.96129 -23.72347 -22.48450 -22.32963 -20.86512 -20.00347 -18.91887 -18.04223 -17.74511 -17.38318 -16.45594 -16.15683 -15.68281 -15.15773 -15.02199 -14.71079 -14.38360 -14.35208 -14.06502 -13.80800 -13.58432 -13.12302 -13.08116 -13.00729 -12.82663 -12.62428 -12.23778 -12.17486 -11.99763 -11.91759 -11.70742 -11.49334 -11.40744 -11.24094 -11.00221 -10.91227 -10.88939 -10.83739 -10.52050 -10.48452 -10.24330 -9.77748 -9.67200 -9.19666 -8.59741 -8.54113 -8.38566 -6.17607 -4.22782 0.41500 1.32608 1.78888 2.97180 3.25649 3.29801 3.33303 3.67530 3.77540 4.06720 4.17565 4.28643 4.37160 4.46900 4.67409 4.87501 4.98630 4.99222 5.09605 5.13799 5.15920 5.20677 5.22973 5.26821 5.37228 5.47957 5.57893 5.70116 5.71474 5.74276 5.79337 5.90567 5.94671 6.00022 6.22039 6.24376 6.27487 6.32418 6.52140 6.83109 6.89984 7.23596 7.28417 7.42525 7.58250 7.77235 8.12560 8.81700 9.42142 10.92402 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021162 B = 0.002606 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.790478 B =10741.706909 C =11133.146051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.158 3.842 3 H 0.080 0.920 4 C -0.095 4.095 5 H 0.093 0.907 6 C 0.084 3.916 7 O -0.574 6.574 8 C -0.115 4.115 9 C 0.113 3.887 10 N -1.009 6.009 11 S 2.711 3.289 12 O -0.961 6.961 13 O -0.958 6.958 14 C -0.705 4.705 15 C -0.023 4.023 16 C -0.145 4.145 17 C 0.026 3.974 18 C 0.040 3.960 19 C -0.518 4.518 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.892 5.892 23 Si 0.899 3.101 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 C -0.145 4.145 28 C -0.023 4.023 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.379 0.621 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.265 0.735 44 H 0.129 0.871 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.803 -13.164 -17.774 25.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.052 3.948 3 H 0.098 0.902 4 C -0.115 4.115 5 H 0.111 0.889 6 C 0.006 3.994 7 O -0.379 6.379 8 C -0.154 4.154 9 C -0.012 4.012 10 N -0.846 5.846 11 S 2.807 3.193 12 O -0.952 6.952 13 O -0.948 6.948 14 C -0.794 4.794 15 C -0.043 4.043 16 C -0.164 4.164 17 C 0.026 3.974 18 C 0.003 3.997 19 C -0.556 4.556 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.530 5.530 23 Si 0.726 3.274 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.164 4.164 28 C -0.043 4.043 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.226 0.774 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.147 0.853 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.835 -13.372 -16.768 24.994 hybrid contribution 0.165 0.941 0.664 1.163 sum -12.670 -12.431 -16.104 23.966 Atomic orbital electron populations 1.22681 0.94682 1.03099 1.04686 1.21164 0.94296 0.95573 0.83771 0.90216 1.22200 0.99201 0.96961 0.93097 0.88910 1.22298 0.95532 0.95577 0.86015 1.86458 1.45166 1.79077 1.27237 1.22733 1.02144 0.96081 0.94432 1.22098 0.94747 0.88280 0.96116 1.58751 1.64800 1.39428 1.21645 1.01196 0.73836 0.73446 0.70856 1.93547 1.87015 1.46608 1.67981 1.93507 1.42643 1.73078 1.85606 1.30406 1.17853 1.09943 1.21223 1.20759 0.97806 0.91212 0.94497 1.21244 0.93956 1.00016 1.01224 1.21120 0.95364 0.94836 0.86072 1.18533 0.91257 0.92991 0.96918 1.20932 1.11055 1.27872 0.95765 0.92347 1.25002 0.94905 0.95765 0.98453 1.69938 1.14004 1.31946 1.37104 0.86533 0.77961 0.78560 0.84304 1.20024 1.21091 1.20035 1.21247 0.99760 0.93387 1.02013 1.20769 0.91188 0.99643 0.92700 0.88775 0.91281 0.92058 0.92761 0.93215 0.77376 0.89619 0.90655 0.91184 0.89734 0.85329 0.85341 0.94714 0.94716 0.92560 0.85324 0.85354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.71 7.86 37.16 0.29 -1.41 16 2 C 0.16 1.47 3.63 -66.96 -0.24 1.23 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.09 -0.75 3.16 -88.79 -0.28 -1.03 16 5 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 6 C 0.08 0.53 5.19 37.16 0.19 0.73 16 7 O -0.57 -3.95 13.50 -35.23 -0.48 -4.42 16 8 C -0.11 -0.90 6.38 -24.58 -0.16 -1.05 16 9 C 0.11 1.05 7.11 -2.53 -0.02 1.03 16 10 N -1.01 -11.18 3.41 -104.42 -0.36 -11.54 16 11 S 2.71 38.87 5.89 -107.50 -0.63 38.24 16 12 O -0.96 -15.88 16.60 -57.17 -0.95 -16.83 16 13 O -0.96 -15.01 14.31 -57.17 -0.82 -15.82 16 14 C -0.70 -11.37 5.97 -39.58 -0.24 -11.61 16 15 C -0.02 -0.38 9.52 -39.58 -0.38 -0.76 16 16 C -0.15 -2.73 9.70 -39.58 -0.38 -3.11 16 17 C 0.03 0.55 5.07 -104.63 -0.53 0.02 16 18 C 0.04 0.98 5.10 -29.03 -0.15 0.83 16 19 C -0.52 -14.12 9.09 -34.44 -0.31 -14.43 16 20 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -25.60 13.29 55.43 0.74 -24.87 16 23 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 27 C -0.15 -2.74 9.70 -39.58 -0.38 -3.12 16 28 C -0.02 -0.39 9.52 -39.58 -0.38 -0.77 16 29 H 0.09 1.04 5.68 -51.92 -0.29 0.75 16 30 H 0.07 0.45 6.71 -51.93 -0.35 0.10 16 31 H 0.06 0.51 7.56 -51.93 -0.39 0.12 16 32 H 0.05 0.31 6.61 -51.93 -0.34 -0.03 16 33 H 0.05 0.27 7.61 -51.93 -0.40 -0.13 16 34 H 0.38 0.97 9.12 45.56 0.42 1.38 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.56 8.02 -51.93 -0.42 0.15 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.78 7.78 -51.93 -0.40 0.38 16 39 H 0.13 1.80 7.62 -52.49 -0.40 1.40 16 40 H 0.13 2.28 8.06 -52.49 -0.42 1.85 16 41 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 42 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.13 2.30 8.06 -52.49 -0.42 1.87 16 45 H 0.13 1.86 7.62 -52.49 -0.40 1.46 16 LS Contribution 375.57 15.07 5.66 5.66 Total: -1.00 -33.43 375.57 -10.82 -44.25 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -5.90 Total: 1.04 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: -3.06 Total: -31.87 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.38 Total: -36.40 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -2.24 Total: -37.08 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 38.87 SS G_CDS: -0.63 Total: 38.24 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.43 -10.82 -44.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363878081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.619 kcal (2) G-P(sol) polarization free energy of solvation -33.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds