Wall clock time and date at job start Tue Mar 31 2020 23:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.99872 * 2 1 4 4 C 1.54315 * 109.98788 * 238.96767 * 2 1 3 5 5 H 1.08995 * 110.92460 * 144.63239 * 4 2 1 6 6 C 1.53003 * 110.74117 * 21.37545 * 4 2 1 7 7 O 1.42894 * 109.47042 * 180.10716 * 6 4 2 8 8 C 1.55162 * 102.86150 * 263.04823 * 4 2 1 9 9 C 1.54907 * 101.58350 * 324.30208 * 8 4 2 10 10 N 1.47027 * 109.88073 * 121.08980 * 2 1 3 11 11 S 1.65595 * 125.64979 * 300.51395 * 10 2 1 12 12 O 1.42103 * 106.40132 * 156.17916 * 11 10 2 13 13 O 1.42104 * 106.40409 * 23.25677 * 11 10 2 14 14 C 1.76202 * 107.21980 * 269.71690 * 11 10 2 15 15 C 1.38235 * 120.00249 * 89.99626 * 14 11 10 16 16 C 1.38234 * 120.00220 * 179.97438 * 15 14 11 17 17 C 1.38233 * 120.00037 * 0.28719 * 16 15 14 18 18 C 1.50693 * 120.00207 * 179.72405 * 17 16 15 19 19 C 1.50709 * 109.47444 * 89.99457 * 18 17 16 20 20 H 1.07999 * 119.99476 * 0.02562 * 19 18 17 21 21 C 1.37873 * 120.00210 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99914 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00074 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47133 * 59.99916 * 23 21 19 25 25 H 1.48496 * 109.47035 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47085 * 300.00229 * 23 21 19 27 27 C 1.38238 * 119.99747 * 359.50225 * 17 16 15 28 28 C 1.38234 * 120.00083 * 0.44989 * 27 17 16 29 29 H 1.09008 * 109.46946 * 300.36519 * 1 2 3 30 30 H 1.09000 * 109.47214 * 60.35804 * 1 2 3 31 31 H 1.08998 * 109.47123 * 180.36201 * 1 2 3 32 32 H 1.08993 * 109.47442 * 300.11204 * 6 4 2 33 33 H 1.09000 * 109.46550 * 60.10982 * 6 4 2 34 34 H 0.96695 * 114.00095 * 180.02562 * 7 6 4 35 35 H 1.08999 * 111.00259 * 206.22526 * 8 4 2 36 36 H 1.08999 * 111.00108 * 82.37409 * 8 4 2 37 37 H 1.08993 * 110.36810 * 278.17335 * 9 8 4 38 38 H 1.08996 * 110.46078 * 155.89719 * 9 8 4 39 39 H 1.07999 * 119.99770 * 359.97438 * 15 14 11 40 40 H 1.08002 * 119.99744 * 180.02562 * 16 15 14 41 41 H 1.09000 * 109.47097 * 209.99342 * 18 17 16 42 42 H 1.09001 * 109.47081 * 329.99847 * 18 17 16 43 43 H 0.97001 * 119.99867 * 179.97438 * 22 21 19 44 44 H 1.07999 * 119.99927 * 180.28388 * 27 17 16 45 45 H 1.08002 * 120.00281 * 179.83134 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0574 -0.7476 -1.2426 5 1 2.9707 -0.2850 -1.6167 6 6 0.9905 -0.7980 -2.3381 7 8 1.5057 -1.4970 -3.4729 8 6 2.3476 -2.1693 -0.6930 9 6 2.8523 -1.8530 0.7369 10 7 2.0300 -0.7140 1.1840 11 16 1.7156 -0.3099 2.7589 12 8 1.8851 -1.4982 3.5195 13 8 0.5088 0.4402 2.7475 14 6 2.9848 0.7974 3.2765 15 6 2.8235 2.1601 3.1098 16 6 3.8189 3.0288 3.5164 17 6 4.9782 2.5345 4.0843 18 6 6.0660 3.4811 4.5219 19 6 5.8348 3.8839 5.9557 20 1 4.9853 3.4931 6.4960 21 6 6.7077 4.7512 6.5774 22 7 7.7419 5.2275 5.9192 23 14 6.4207 5.2510 8.3543 24 1 6.4396 4.0429 9.2176 25 1 7.4920 6.1847 8.7851 26 1 5.1018 5.9233 8.4725 27 6 5.1376 1.1720 4.2551 28 6 4.1418 0.3033 3.8494 29 1 -0.3633 0.5195 0.8868 30 1 -0.3634 0.5083 -0.8932 31 1 -0.3633 -1.0276 0.0065 32 1 0.1081 -1.3158 -1.9623 33 1 0.7199 0.2171 -2.6286 34 1 0.8817 -1.5672 -4.2082 35 1 3.1212 -2.6646 -1.2798 36 1 1.4382 -2.7694 -0.6625 37 1 3.9058 -1.5746 0.7144 38 1 2.7012 -2.7105 1.3927 39 1 1.9198 2.5461 2.6618 40 1 3.6927 4.0936 3.3864 41 1 7.0339 2.9874 4.4348 42 1 6.0522 4.3681 3.8886 43 1 8.3558 5.8380 6.3566 44 1 6.0414 0.7860 4.7030 45 1 4.2675 -0.7613 3.9803 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363878081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:18 Heat of formation + Delta-G solvation = -128.152823 kcal Electronic energy + Delta-G solvation = -27524.462754 eV Core-core repulsion = 23632.455965 eV Total energy + Delta-G solvation = -3892.006789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.35327 -40.25900 -38.42091 -37.27567 -37.00860 -35.61558 -33.34603 -32.87378 -32.02328 -31.98147 -29.26662 -27.43899 -25.60270 -25.57225 -23.76428 -23.22189 -22.44945 -20.73074 -19.97236 -18.87980 -18.73389 -18.56158 -18.22720 -17.05460 -16.89572 -16.63829 -16.02274 -15.97905 -15.61496 -15.41574 -15.06073 -14.81762 -14.63640 -14.48493 -14.27804 -13.96384 -13.86382 -13.67361 -13.43159 -13.41626 -13.25945 -13.21116 -13.07495 -12.85011 -12.68773 -12.67050 -12.25423 -12.08341 -12.06752 -11.82745 -11.71224 -11.59538 -11.45682 -11.41684 -10.70001 -10.66476 -10.10872 -9.99666 -9.93117 -8.28404 -6.41442 -0.73373 -0.09123 0.36501 1.37510 1.39160 1.47707 1.91373 2.33702 2.55343 2.76087 3.03223 3.04112 3.32412 3.61032 3.73119 3.84976 3.93853 4.07628 4.13151 4.24626 4.39245 4.41209 4.43069 4.44555 4.50672 4.58242 4.65765 4.78242 4.78478 4.84233 4.87864 4.96172 5.05511 5.07497 5.13099 5.21573 5.23883 5.27454 5.30364 5.32744 5.48841 5.54300 5.65301 5.83315 5.89610 6.07867 6.69965 6.99433 7.27634 8.81531 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021162 B = 0.002606 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.790478 B =10741.706909 C =11133.146051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.150 3.850 3 H 0.083 0.917 4 C -0.092 4.092 5 H 0.089 0.911 6 C 0.085 3.915 7 O -0.592 6.592 8 C -0.109 4.109 9 C 0.103 3.897 10 N -1.004 6.004 11 S 2.734 3.266 12 O -0.981 6.981 13 O -0.969 6.969 14 C -0.703 4.703 15 C -0.019 4.019 16 C -0.154 4.154 17 C -0.003 4.003 18 C 0.049 3.951 19 C -0.535 4.535 20 H 0.053 0.947 21 C 0.010 3.990 22 N -0.925 5.925 23 Si 0.964 3.036 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.155 4.155 28 C -0.021 4.021 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.397 0.603 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.156 0.844 40 H 0.131 0.869 41 H 0.013 0.987 42 H 0.014 0.986 43 H 0.268 0.732 44 H 0.130 0.870 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.602 -14.312 -18.757 27.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.044 3.956 3 H 0.101 0.899 4 C -0.112 4.112 5 H 0.107 0.893 6 C 0.007 3.993 7 O -0.401 6.401 8 C -0.148 4.148 9 C -0.021 4.021 10 N -0.844 5.844 11 S 2.827 3.173 12 O -0.971 6.971 13 O -0.959 6.959 14 C -0.790 4.790 15 C -0.038 4.038 16 C -0.173 4.173 17 C -0.004 4.004 18 C 0.012 3.988 19 C -0.573 4.573 20 H 0.072 0.928 21 C -0.189 4.189 22 N -0.564 5.564 23 Si 0.788 3.212 24 H -0.194 1.194 25 H -0.203 1.203 26 H -0.193 1.193 27 C -0.173 4.173 28 C -0.041 4.041 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.247 0.753 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.174 0.826 40 H 0.149 0.851 41 H 0.031 0.969 42 H 0.032 0.968 43 H 0.077 0.923 44 H 0.148 0.852 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.630 -14.507 -17.751 27.195 hybrid contribution 0.661 1.203 0.820 1.599 sum -13.970 -13.304 -16.931 25.667 Atomic orbital electron populations 1.22684 0.94164 1.03464 1.04850 1.21397 0.94783 0.95849 0.83540 0.89875 1.22178 0.99605 0.96544 0.92922 0.89251 1.22283 0.94998 0.96424 0.85593 1.86404 1.46466 1.79168 1.28038 1.22721 1.02586 0.96232 0.93259 1.22334 0.94984 0.87640 0.97150 1.58522 1.65025 1.39928 1.20925 1.00518 0.72979 0.72511 0.71313 1.93521 1.87114 1.47065 1.69437 1.93501 1.42861 1.73354 1.86202 1.30918 1.17948 1.10434 1.19723 1.21022 0.97972 0.91138 0.93637 1.21316 0.93913 1.00695 1.01389 1.20830 0.95447 0.95098 0.88977 1.18257 0.91857 0.92913 0.95766 1.21256 1.10888 1.27977 0.97172 0.92832 1.25868 0.94579 0.95704 1.02774 1.70048 1.14871 1.32602 1.38917 0.85514 0.78153 0.78399 0.79117 1.19378 1.20316 1.19338 1.21305 1.00681 0.92914 1.02449 1.21012 0.90665 1.00553 0.91829 0.90970 0.88781 0.91575 0.91868 0.92050 0.75278 0.88793 0.90134 0.90511 0.89662 0.82609 0.85096 0.96864 0.96784 0.92332 0.85215 0.82953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.92 7.86 71.98 0.57 -2.35 16 2 C 0.15 2.43 3.63 45.34 0.16 2.59 16 3 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 4 C -0.09 -1.22 3.16 -9.61 -0.03 -1.25 16 5 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 6 C 0.08 0.83 5.19 71.98 0.37 1.20 16 7 O -0.59 -6.52 13.50 -148.98 -2.01 -8.53 16 8 C -0.11 -1.42 6.38 31.99 0.20 -1.22 16 9 C 0.10 1.71 7.11 86.85 0.62 2.32 16 10 N -1.00 -20.18 3.41 -484.28 -1.65 -21.84 16 11 S 2.73 73.51 5.89 -56.49 -0.33 73.18 16 12 O -0.98 -30.74 16.60 -128.00 -2.13 -32.86 16 13 O -0.97 -28.60 14.31 -128.00 -1.83 -30.43 16 14 C -0.70 -21.73 5.97 22.27 0.13 -21.59 16 15 C -0.02 -0.59 9.52 22.27 0.21 -0.38 16 16 C -0.15 -5.83 9.70 22.27 0.22 -5.61 16 17 C 0.00 -0.14 5.07 -19.87 -0.10 -0.24 16 18 C 0.05 2.53 5.10 29.10 0.15 2.68 16 19 C -0.54 -30.01 9.09 25.60 0.23 -29.78 16 20 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 21 C 0.01 0.55 5.46 84.65 0.46 1.02 16 22 N -0.93 -54.45 13.29 21.45 0.28 -54.16 16 23 Si 0.96 43.77 29.54 68.60 2.03 45.79 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 27 C -0.15 -5.91 9.70 22.27 0.22 -5.69 16 28 C -0.02 -0.70 9.52 22.27 0.21 -0.49 16 29 H 0.07 1.45 5.68 -2.38 -0.01 1.44 16 30 H 0.09 0.92 6.71 -2.39 -0.02 0.91 16 31 H 0.07 0.93 7.56 -2.39 -0.02 0.91 16 32 H 0.06 0.51 6.61 -2.39 -0.02 0.49 16 33 H 0.06 0.46 7.61 -2.39 -0.02 0.44 16 34 H 0.40 0.95 9.12 -74.06 -0.68 0.27 16 35 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 0.98 8.02 -2.39 -0.02 0.96 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 1.41 7.78 -2.39 -0.02 1.39 16 39 H 0.16 4.05 7.62 -2.91 -0.02 4.03 16 40 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 41 H 0.01 0.72 8.09 -2.39 -0.02 0.70 16 42 H 0.01 0.76 8.09 -2.39 -0.02 0.74 16 43 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 44 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 45 H 0.15 4.15 7.62 -2.91 -0.02 4.13 16 Total: -1.00 -72.10 375.57 -1.69 -73.79 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.33 Total: 13.84 kcal Atomic # 6 Polarization: -62.42 SS G_CDS: 3.63 Total: -58.79 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -1.37 Total: -76.00 kcal Atomic # 8 Polarization: -65.85 SS G_CDS: -5.97 Total: -71.82 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 73.51 SS G_CDS: -0.33 Total: 73.18 kcal Total: -72.10 -1.69 -73.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363878081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.360 kcal (2) G-P(sol) polarization free energy of solvation -72.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds