Wall clock time and date at job start Tue Mar 31 2020 23:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.99656 * 2 1 4 4 C 1.54339 * 109.99126 * 238.97061 * 2 1 3 5 5 H 1.09000 * 110.51366 * 336.97605 * 4 2 1 6 6 C 1.52998 * 111.00245 * 100.12441 * 4 2 1 7 7 O 1.42904 * 109.46903 * 180.23389 * 6 4 2 8 8 C 1.55153 * 103.01721 * 218.66462 * 4 2 1 9 9 C 1.54907 * 101.58593 * 35.30387 * 8 4 2 10 10 N 1.47016 * 109.88479 * 121.10118 * 2 1 3 11 11 S 1.65606 * 125.64731 * 298.39276 * 10 2 1 12 12 O 1.42099 * 106.40007 * 156.17759 * 11 10 2 13 13 O 1.42098 * 106.40005 * 23.25808 * 11 10 2 14 14 C 1.76199 * 107.21944 * 269.71621 * 11 10 2 15 15 C 1.38237 * 119.99795 * 89.99952 * 14 11 10 16 16 C 1.38240 * 119.99892 * 180.02562 * 15 14 11 17 17 C 1.38238 * 119.99966 * 359.95674 * 16 15 14 18 18 C 1.50698 * 119.99845 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.46993 * 90.00057 * 18 17 16 20 20 H 1.07991 * 120.00449 * 359.72131 * 19 18 17 21 21 C 1.37885 * 119.99686 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99913 * 359.72095 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 179.72528 * 21 19 18 24 24 H 1.48498 * 109.47416 * 59.99812 * 23 21 19 25 25 H 1.48508 * 109.46609 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46903 * 299.99397 * 23 21 19 27 27 C 1.38240 * 119.99731 * 0.27223 * 17 16 15 28 28 C 1.38233 * 120.00248 * 359.52316 * 27 17 16 29 29 H 1.09002 * 109.47078 * 300.35258 * 1 2 3 30 30 H 1.09002 * 109.47542 * 60.35196 * 1 2 3 31 31 H 1.09001 * 109.47526 * 180.35259 * 1 2 3 32 32 H 1.08995 * 109.47090 * 300.23019 * 6 4 2 33 33 H 1.08996 * 109.46992 * 60.23800 * 6 4 2 34 34 H 0.96699 * 113.99975 * 179.97438 * 7 6 4 35 35 H 1.08997 * 111.00501 * 277.22747 * 8 4 2 36 36 H 1.09001 * 111.00731 * 153.37845 * 8 4 2 37 37 H 1.09000 * 110.37067 * 204.14919 * 9 8 4 38 38 H 1.09003 * 110.45778 * 81.87418 * 9 8 4 39 39 H 1.07997 * 120.00113 * 359.97438 * 15 14 11 40 40 H 1.07993 * 119.99866 * 179.97438 * 16 15 14 41 41 H 1.08998 * 109.47083 * 329.99473 * 18 17 16 42 42 H 1.09001 * 109.46875 * 209.99736 * 18 17 16 43 43 H 0.97000 * 119.99651 * 180.02562 * 22 21 19 44 44 H 1.07995 * 119.99782 * 179.72830 * 27 17 16 45 45 H 1.07998 * 120.00399 * 180.25094 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7476 -1.2428 5 1 1.3052 -1.4404 -1.6199 6 6 2.4810 0.2359 -2.3357 7 8 2.9580 -0.4897 -3.4707 8 6 3.2863 -1.5182 -0.6916 9 6 2.8099 -1.8825 0.7366 10 7 2.0300 -0.7141 1.1838 11 16 1.7565 -0.2817 2.7588 12 8 1.9044 -1.4652 3.5313 13 8 0.5724 0.5039 2.7594 14 6 3.0671 0.7933 3.2397 15 6 2.9432 2.1582 3.0585 16 6 3.9717 3.0016 3.4353 17 6 5.1236 2.4802 3.9940 18 6 6.2445 3.3997 4.4053 19 6 6.0447 3.8263 5.8367 20 1 5.1890 3.4711 6.3916 21 6 6.9516 4.6743 6.4363 22 7 7.9939 5.1064 5.7607 23 14 6.6999 5.2092 8.2083 24 1 6.6894 4.0140 9.0895 25 1 7.8052 6.1143 8.6138 26 1 5.4046 5.9252 8.3299 27 6 5.2493 1.1149 4.1707 28 6 4.2192 0.2719 3.7979 29 1 -0.3633 0.5193 0.8868 30 1 -0.3634 0.5084 -0.8931 31 1 -0.3634 -1.0276 0.0063 32 1 1.6257 0.8453 -2.6273 33 1 3.2742 0.8804 -1.9569 34 1 3.2440 0.0714 -4.2044 35 1 4.1668 -0.8767 -0.6581 36 1 3.4807 -2.4154 -1.2793 37 1 3.6655 -2.0413 1.3930 38 1 2.1806 -2.7722 0.7130 39 1 2.0433 2.5655 2.6219 40 1 3.8750 4.0678 3.2934 41 1 6.2480 4.2790 3.7611 42 1 7.1963 2.8768 4.3114 43 1 8.6321 5.7027 6.1827 44 1 6.1511 0.7072 4.6032 45 1 4.3158 -0.7944 3.9397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363878086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:23 Heat of formation + Delta-G solvation = -108.933736 kcal Electronic energy + Delta-G solvation = -27609.378609 eV Core-core repulsion = 23718.205222 eV Total energy + Delta-G solvation = -3891.173387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.51194 -38.81438 -37.20383 -36.77725 -35.78426 -33.69415 -31.90398 -31.57593 -31.51386 -30.59495 -27.48784 -27.26332 -24.20837 -23.73552 -22.37204 -22.24858 -20.86140 -20.69872 -18.97054 -17.82417 -17.57885 -17.38644 -16.47697 -16.37098 -15.52288 -15.18622 -15.00894 -14.53554 -14.39300 -14.22156 -13.93178 -13.88008 -13.78452 -13.38190 -13.12481 -12.92876 -12.82191 -12.42629 -12.25130 -11.99240 -11.97622 -11.90542 -11.71900 -11.57533 -11.50236 -11.18240 -11.02894 -10.96337 -10.91773 -10.86119 -10.53866 -10.49568 -10.28843 -9.78134 -9.68729 -9.19430 -8.60984 -8.55010 -8.39658 -6.18595 -4.23751 0.41242 1.31712 1.77536 2.97642 3.25082 3.29210 3.32772 3.67836 3.76979 4.06020 4.15983 4.33099 4.37435 4.46371 4.67898 4.90686 4.97404 5.05459 5.05910 5.13846 5.15738 5.20089 5.21561 5.32178 5.35481 5.47916 5.61790 5.69856 5.70334 5.77034 5.81130 5.89284 5.92142 6.07550 6.19914 6.23128 6.26414 6.31283 6.51057 6.81841 6.88695 7.25061 7.27222 7.41211 7.57005 7.76327 8.11626 8.80784 9.41231 10.91410 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016560 B = 0.002859 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.382203 B = 9792.244916 C =10554.180355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.157 3.843 3 H 0.077 0.923 4 C -0.094 4.094 5 H 0.092 0.908 6 C 0.084 3.916 7 O -0.572 6.572 8 C -0.119 4.119 9 C 0.120 3.880 10 N -1.009 6.009 11 S 2.710 3.290 12 O -0.960 6.960 13 O -0.958 6.958 14 C -0.705 4.705 15 C -0.023 4.023 16 C -0.146 4.146 17 C 0.027 3.973 18 C 0.040 3.960 19 C -0.519 4.519 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.892 5.892 23 Si 0.899 3.101 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 C -0.145 4.145 28 C -0.023 4.023 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.381 0.619 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.034 0.966 42 H 0.035 0.965 43 H 0.265 0.735 44 H 0.129 0.871 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.967 -11.315 -17.505 23.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.051 3.949 3 H 0.095 0.905 4 C -0.114 4.114 5 H 0.111 0.889 6 C 0.006 3.994 7 O -0.378 6.378 8 C -0.158 4.158 9 C -0.005 4.005 10 N -0.846 5.846 11 S 2.805 3.195 12 O -0.951 6.951 13 O -0.948 6.948 14 C -0.794 4.794 15 C -0.043 4.043 16 C -0.165 4.165 17 C 0.026 3.974 18 C 0.003 3.997 19 C -0.557 4.557 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.530 5.530 23 Si 0.726 3.274 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.164 4.164 28 C -0.043 4.043 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.228 0.772 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.147 0.853 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.677 -11.974 -16.490 23.487 hybrid contribution 0.799 1.357 0.645 1.702 sum -10.878 -10.617 -15.845 21.957 Atomic orbital electron populations 1.22549 0.94277 1.03153 1.04412 1.21172 0.94318 0.95631 0.83756 0.90457 1.22251 0.98523 0.97515 0.93072 0.88925 1.22136 0.97801 0.93189 0.86259 1.86449 1.86082 1.37928 1.27308 1.22790 0.97447 1.01061 0.94532 1.22017 0.94893 0.87683 0.95914 1.58766 1.66892 1.37183 1.21766 1.01251 0.73906 0.73425 0.70882 1.93554 1.87115 1.47029 1.67363 1.93513 1.44231 1.71504 1.85576 1.30416 1.18376 1.09440 1.21162 1.20759 0.97799 0.91282 0.94427 1.21244 0.93761 1.00078 1.01383 1.21119 0.95708 0.94615 0.85943 1.18530 0.90781 0.93305 0.97064 1.20934 1.09689 1.29092 0.95968 0.92335 1.25003 0.94938 0.95772 0.98387 1.69937 1.12527 1.33438 1.37088 0.86534 0.77870 0.78681 0.84278 1.20016 1.21084 1.20028 1.21247 0.99453 0.93570 1.02134 1.20768 0.91204 0.99605 0.92724 0.89069 0.91430 0.92099 0.93263 0.93040 0.77234 0.90372 0.89650 0.90380 0.91097 0.85343 0.85358 0.94751 0.94703 0.92556 0.85333 0.85374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.70 9.05 37.15 0.34 -1.37 16 2 C 0.16 1.47 3.27 -66.95 -0.22 1.25 16 3 H 0.08 0.68 7.83 -51.93 -0.41 0.28 16 4 C -0.09 -0.74 2.75 -88.78 -0.24 -0.98 16 5 H 0.09 0.72 7.84 -51.93 -0.41 0.31 16 6 C 0.08 0.58 6.35 37.16 0.24 0.81 16 7 O -0.57 -4.12 13.51 -35.23 -0.48 -4.60 16 8 C -0.12 -0.97 6.39 -24.59 -0.16 -1.12 16 9 C 0.12 1.12 6.98 -2.53 -0.02 1.10 16 10 N -1.01 -11.23 3.40 -104.42 -0.35 -11.59 16 11 S 2.71 39.04 5.90 -107.50 -0.63 38.41 16 12 O -0.96 -15.98 16.87 -57.17 -0.96 -16.95 16 13 O -0.96 -15.15 14.44 -57.17 -0.83 -15.97 16 14 C -0.70 -11.29 5.97 -39.58 -0.24 -11.52 16 15 C -0.02 -0.38 9.52 -39.58 -0.38 -0.76 16 16 C -0.15 -2.70 9.70 -39.58 -0.38 -3.09 16 17 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16 18 C 0.04 0.98 5.10 -29.04 -0.15 0.83 16 19 C -0.52 -14.08 9.09 -34.44 -0.31 -14.39 16 20 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 23 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 27 C -0.15 -2.71 9.70 -39.58 -0.38 -3.09 16 28 C -0.02 -0.39 9.52 -39.58 -0.38 -0.77 16 29 H 0.09 1.03 5.79 -51.93 -0.30 0.73 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.35 8.10 -51.93 -0.42 -0.07 16 34 H 0.38 1.16 9.12 45.56 0.42 1.58 16 35 H 0.08 0.66 8.02 -51.93 -0.42 0.24 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.13 1.79 7.62 -52.49 -0.40 1.39 16 40 H 0.13 2.25 8.06 -52.49 -0.42 1.82 16 41 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 42 H 0.03 0.89 8.08 -51.93 -0.42 0.47 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 45 H 0.13 1.84 7.62 -52.49 -0.40 1.44 16 LS Contribution 381.33 15.07 5.75 5.75 Total: -1.00 -33.30 381.33 -10.80 -44.10 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.10 Total: 1.00 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: -2.91 Total: -31.49 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.38 Total: -36.34 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -2.27 Total: -37.52 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 39.04 SS G_CDS: -0.63 Total: 38.41 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.30 -10.80 -44.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363878086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.834 kcal (2) G-P(sol) polarization free energy of solvation -33.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds