Wall clock time and date at job start Tue Mar 31 2020 23:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.99656 * 2 1 4 4 C 1.54339 * 109.99126 * 238.97061 * 2 1 3 5 5 H 1.09000 * 110.51366 * 336.97605 * 4 2 1 6 6 C 1.52998 * 111.00245 * 100.12441 * 4 2 1 7 7 O 1.42904 * 109.46903 * 180.23389 * 6 4 2 8 8 C 1.55153 * 103.01721 * 218.66462 * 4 2 1 9 9 C 1.54907 * 101.58593 * 35.30387 * 8 4 2 10 10 N 1.47016 * 109.88479 * 121.10118 * 2 1 3 11 11 S 1.65606 * 125.64731 * 298.39276 * 10 2 1 12 12 O 1.42099 * 106.40007 * 156.17759 * 11 10 2 13 13 O 1.42098 * 106.40005 * 23.25808 * 11 10 2 14 14 C 1.76199 * 107.21944 * 269.71621 * 11 10 2 15 15 C 1.38237 * 119.99795 * 89.99952 * 14 11 10 16 16 C 1.38240 * 119.99892 * 180.02562 * 15 14 11 17 17 C 1.38238 * 119.99966 * 359.95674 * 16 15 14 18 18 C 1.50698 * 119.99845 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.46993 * 90.00057 * 18 17 16 20 20 H 1.07991 * 120.00449 * 359.72131 * 19 18 17 21 21 C 1.37885 * 119.99686 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99913 * 359.72095 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 179.72528 * 21 19 18 24 24 H 1.48498 * 109.47416 * 59.99812 * 23 21 19 25 25 H 1.48508 * 109.46609 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46903 * 299.99397 * 23 21 19 27 27 C 1.38240 * 119.99731 * 0.27223 * 17 16 15 28 28 C 1.38233 * 120.00248 * 359.52316 * 27 17 16 29 29 H 1.09002 * 109.47078 * 300.35258 * 1 2 3 30 30 H 1.09002 * 109.47542 * 60.35196 * 1 2 3 31 31 H 1.09001 * 109.47526 * 180.35259 * 1 2 3 32 32 H 1.08995 * 109.47090 * 300.23019 * 6 4 2 33 33 H 1.08996 * 109.46992 * 60.23800 * 6 4 2 34 34 H 0.96699 * 113.99975 * 179.97438 * 7 6 4 35 35 H 1.08997 * 111.00501 * 277.22747 * 8 4 2 36 36 H 1.09001 * 111.00731 * 153.37845 * 8 4 2 37 37 H 1.09000 * 110.37067 * 204.14919 * 9 8 4 38 38 H 1.09003 * 110.45778 * 81.87418 * 9 8 4 39 39 H 1.07997 * 120.00113 * 359.97438 * 15 14 11 40 40 H 1.07993 * 119.99866 * 179.97438 * 16 15 14 41 41 H 1.08998 * 109.47083 * 329.99473 * 18 17 16 42 42 H 1.09001 * 109.46875 * 209.99736 * 18 17 16 43 43 H 0.97000 * 119.99651 * 180.02562 * 22 21 19 44 44 H 1.07995 * 119.99782 * 179.72830 * 27 17 16 45 45 H 1.07998 * 120.00399 * 180.25094 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7476 -1.2428 5 1 1.3052 -1.4404 -1.6199 6 6 2.4810 0.2359 -2.3357 7 8 2.9580 -0.4897 -3.4707 8 6 3.2863 -1.5182 -0.6916 9 6 2.8099 -1.8825 0.7366 10 7 2.0300 -0.7141 1.1838 11 16 1.7565 -0.2817 2.7588 12 8 1.9044 -1.4652 3.5313 13 8 0.5724 0.5039 2.7594 14 6 3.0671 0.7933 3.2397 15 6 2.9432 2.1582 3.0585 16 6 3.9717 3.0016 3.4353 17 6 5.1236 2.4802 3.9940 18 6 6.2445 3.3997 4.4053 19 6 6.0447 3.8263 5.8367 20 1 5.1890 3.4711 6.3916 21 6 6.9516 4.6743 6.4363 22 7 7.9939 5.1064 5.7607 23 14 6.6999 5.2092 8.2083 24 1 6.6894 4.0140 9.0895 25 1 7.8052 6.1143 8.6138 26 1 5.4046 5.9252 8.3299 27 6 5.2493 1.1149 4.1707 28 6 4.2192 0.2719 3.7979 29 1 -0.3633 0.5193 0.8868 30 1 -0.3634 0.5084 -0.8931 31 1 -0.3634 -1.0276 0.0063 32 1 1.6257 0.8453 -2.6273 33 1 3.2742 0.8804 -1.9569 34 1 3.2440 0.0714 -4.2044 35 1 4.1668 -0.8767 -0.6581 36 1 3.4807 -2.4154 -1.2793 37 1 3.6655 -2.0413 1.3930 38 1 2.1806 -2.7722 0.7130 39 1 2.0433 2.5655 2.6219 40 1 3.8750 4.0678 3.2934 41 1 6.2480 4.2790 3.7611 42 1 7.1963 2.8768 4.3114 43 1 8.6321 5.7027 6.1827 44 1 6.1511 0.7072 4.6032 45 1 4.3158 -0.7944 3.9397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363878086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:22 Heat of formation + Delta-G solvation = -131.951334 kcal Electronic energy + Delta-G solvation = -27610.376727 eV Core-core repulsion = 23718.205222 eV Total energy + Delta-G solvation = -3892.171505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.25972 -40.20260 -38.42132 -37.31894 -37.01079 -35.61327 -33.34259 -32.62325 -32.22275 -31.98902 -29.26663 -27.97000 -25.60351 -24.84899 -23.75398 -23.07101 -22.41380 -21.36124 -20.07217 -18.85782 -18.60718 -18.49657 -18.12081 -17.24674 -16.87171 -16.61671 -16.01783 -15.85791 -15.68431 -15.25568 -14.96601 -14.74773 -14.61767 -14.54544 -14.43124 -14.11430 -13.92861 -13.71652 -13.42962 -13.39996 -13.21222 -13.17737 -12.93699 -12.71100 -12.66926 -12.65517 -12.41893 -12.14427 -12.06852 -11.79859 -11.71199 -11.64560 -11.53676 -11.44251 -10.77322 -10.66241 -10.11752 -9.99407 -9.92227 -8.28342 -6.41265 -0.73840 -0.08887 0.36719 1.37788 1.39305 1.47834 1.91483 2.33872 2.55671 2.76194 3.02285 3.04274 3.29332 3.60519 3.73706 3.84861 3.93955 4.08205 4.13533 4.21940 4.39458 4.39824 4.43786 4.44862 4.48358 4.57566 4.67821 4.75286 4.78676 4.80905 4.88176 5.00388 5.04331 5.08151 5.15631 5.20943 5.22465 5.24175 5.30573 5.41144 5.45751 5.49678 5.65537 5.83659 5.89763 6.08213 6.70222 6.95623 7.27836 8.81559 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016560 B = 0.002859 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.382203 B = 9792.244916 C =10554.180355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.150 3.850 3 H 0.083 0.917 4 C -0.089 4.089 5 H 0.097 0.903 6 C 0.085 3.915 7 O -0.589 6.589 8 C -0.115 4.115 9 C 0.110 3.890 10 N -1.005 6.005 11 S 2.732 3.268 12 O -0.981 6.981 13 O -0.970 6.970 14 C -0.702 4.702 15 C -0.018 4.018 16 C -0.154 4.154 17 C -0.003 4.003 18 C 0.049 3.951 19 C -0.536 4.536 20 H 0.053 0.947 21 C 0.011 3.989 22 N -0.925 5.925 23 Si 0.963 3.037 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.269 1.269 27 C -0.154 4.154 28 C -0.021 4.021 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.398 0.602 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.156 0.844 40 H 0.131 0.869 41 H 0.014 0.986 42 H 0.013 0.987 43 H 0.268 0.732 44 H 0.130 0.870 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.525 -12.266 -18.425 25.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.044 3.956 3 H 0.101 0.899 4 C -0.109 4.109 5 H 0.115 0.885 6 C 0.007 3.993 7 O -0.397 6.397 8 C -0.154 4.154 9 C -0.014 4.014 10 N -0.844 5.844 11 S 2.825 3.175 12 O -0.971 6.971 13 O -0.960 6.960 14 C -0.789 4.789 15 C -0.037 4.037 16 C -0.173 4.173 17 C -0.003 4.003 18 C 0.012 3.988 19 C -0.574 4.574 20 H 0.072 0.928 21 C -0.189 4.189 22 N -0.564 5.564 23 Si 0.788 3.212 24 H -0.194 1.194 25 H -0.203 1.203 26 H -0.193 1.193 27 C -0.173 4.173 28 C -0.040 4.040 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.247 0.753 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.174 0.826 40 H 0.149 0.851 41 H 0.032 0.968 42 H 0.032 0.968 43 H 0.077 0.923 44 H 0.148 0.852 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -13.220 -12.906 -17.412 25.387 hybrid contribution 1.220 1.563 0.786 2.133 sum -12.000 -11.343 -16.626 23.432 Atomic orbital electron populations 1.22546 0.94041 1.03345 1.04487 1.21403 0.94573 0.96054 0.83548 0.89855 1.22219 0.98385 0.97605 0.92678 0.88453 1.22119 0.98371 0.92829 0.86014 1.86394 1.86244 1.39047 1.28014 1.22768 0.97351 1.01483 0.93764 1.22277 0.95103 0.87342 0.96723 1.58529 1.67067 1.37748 1.21053 1.00576 0.73042 0.72526 0.71344 1.93526 1.87212 1.47530 1.68846 1.93503 1.44501 1.71841 1.86195 1.30895 1.18521 1.09865 1.19664 1.21016 0.97922 0.91232 0.93561 1.21314 0.93737 1.00714 1.01497 1.20828 0.95640 0.94960 0.88874 1.18254 0.91552 0.93141 0.95830 1.21264 1.09520 1.29218 0.97395 0.92838 1.25859 0.94593 0.95767 1.02632 1.70046 1.13354 1.34102 1.38896 0.85523 0.78090 0.78442 0.79177 1.19413 1.20313 1.19346 1.21301 1.00399 0.93064 1.02537 1.21006 0.90624 1.00553 0.91853 0.91169 0.89194 0.91843 0.91830 0.93123 0.75257 0.90791 0.88604 0.90151 0.89956 0.82648 0.85078 0.96758 0.96837 0.92330 0.85223 0.82989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.97 9.05 71.98 0.65 -2.32 16 2 C 0.15 2.44 3.27 45.34 0.15 2.59 16 3 H 0.08 1.27 7.83 -2.39 -0.02 1.25 16 4 C -0.09 -1.17 2.75 -9.60 -0.03 -1.19 16 5 H 0.10 1.22 7.84 -2.39 -0.02 1.20 16 6 C 0.08 0.94 6.35 71.98 0.46 1.39 16 7 O -0.59 -7.03 13.51 -148.98 -2.01 -9.04 16 8 C -0.11 -1.58 6.39 31.98 0.20 -1.38 16 9 C 0.11 1.81 6.98 86.85 0.61 2.41 16 10 N -1.00 -20.22 3.40 -484.27 -1.65 -21.87 16 11 S 2.73 73.73 5.90 -56.49 -0.33 73.39 16 12 O -0.98 -30.91 16.87 -128.00 -2.16 -33.07 16 13 O -0.97 -28.94 14.44 -128.00 -1.85 -30.79 16 14 C -0.70 -21.47 5.97 22.27 0.13 -21.34 16 15 C -0.02 -0.57 9.52 22.27 0.21 -0.36 16 16 C -0.15 -5.73 9.70 22.27 0.22 -5.51 16 17 C 0.00 -0.11 5.07 -19.86 -0.10 -0.21 16 18 C 0.05 2.52 5.10 29.10 0.15 2.67 16 19 C -0.54 -29.91 9.09 25.60 0.23 -29.68 16 20 H 0.05 2.96 7.74 -2.92 -0.02 2.94 16 21 C 0.01 0.59 5.46 84.66 0.46 1.06 16 22 N -0.92 -54.10 13.29 21.45 0.28 -53.82 16 23 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 27 C -0.15 -5.82 9.70 22.27 0.22 -5.60 16 28 C -0.02 -0.68 9.52 22.27 0.21 -0.47 16 29 H 0.07 1.45 5.79 -2.39 -0.01 1.44 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 0.57 8.10 -2.39 -0.02 0.55 16 34 H 0.40 1.51 9.12 -74.06 -0.68 0.84 16 35 H 0.07 1.10 8.02 -2.39 -0.02 1.08 16 36 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.16 3.99 7.62 -2.91 -0.02 3.97 16 40 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 41 H 0.01 0.76 8.09 -2.39 -0.02 0.74 16 42 H 0.01 0.72 8.08 -2.39 -0.02 0.70 16 43 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 44 H 0.13 4.72 8.06 -2.91 -0.02 4.69 16 45 H 0.15 4.09 7.62 -2.91 -0.02 4.07 16 Total: -1.00 -71.54 381.33 -1.60 -73.14 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.32 Total: 14.41 kcal Atomic # 6 Polarization: -61.72 SS G_CDS: 3.77 Total: -57.95 kcal Atomic # 7 Polarization: -74.32 SS G_CDS: -1.36 Total: -75.68 kcal Atomic # 8 Polarization: -66.88 SS G_CDS: -6.02 Total: -72.90 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 73.73 SS G_CDS: -0.33 Total: 73.39 kcal Total: -71.54 -1.60 -73.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363878086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.814 kcal (2) G-P(sol) polarization free energy of solvation -71.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds