Wall clock time and date at job start Tue Mar 31 2020 22:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47269 * 2 1 4 4 C 1.50695 * 109.47348 * 239.99715 * 2 1 3 5 5 H 1.07996 * 119.99924 * 237.69757 * 4 2 1 6 6 C 1.37871 * 120.00136 * 57.69461 * 4 2 1 7 7 N 1.31522 * 119.99881 * 6.58294 * 6 4 2 8 8 Si 1.86799 * 120.00472 * 186.58184 * 6 4 2 9 9 H 1.48497 * 109.46983 * 84.99430 * 8 6 4 10 10 H 1.48494 * 109.47337 * 205.00040 * 8 6 4 11 11 H 1.48506 * 109.47041 * 324.99707 * 8 6 4 12 12 C 1.53005 * 109.46703 * 119.99563 * 2 1 3 13 13 S 1.81397 * 109.47449 * 300.00199 * 12 2 1 14 14 O 1.42100 * 110.54687 * 68.37304 * 13 12 2 15 15 O 1.42109 * 110.53927 * 291.62463 * 13 12 2 16 16 N 1.65599 * 104.45129 * 180.02562 * 13 12 2 17 17 C 1.46499 * 119.99874 * 64.99794 * 16 13 12 18 18 C 1.53006 * 109.47069 * 165.00159 * 17 16 13 19 19 H 1.09002 * 110.12931 * 60.24474 * 18 17 16 20 20 O 1.43936 * 110.15291 * 298.54423 * 18 17 16 21 21 C 1.43937 * 104.95280 * 269.32390 * 20 18 17 22 22 C 1.51085 * 105.95485 * 331.55629 * 21 20 18 23 23 C 1.37967 * 132.68722 * 197.64442 * 22 21 20 24 24 C 1.38297 * 119.91841 * 180.02562 * 23 22 21 25 25 C 1.38260 * 120.04291 * 359.97438 * 24 23 22 26 26 C 1.38297 * 120.03938 * 359.97438 * 25 24 23 27 27 C 1.37966 * 119.91921 * 0.27908 * 26 25 24 28 28 H 1.08998 * 109.47242 * 306.67614 * 1 2 3 29 29 H 1.09001 * 109.46888 * 66.66893 * 1 2 3 30 30 H 1.08998 * 109.47629 * 186.67398 * 1 2 3 31 31 H 1.08999 * 109.47041 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47078 * 300.00088 * 3 2 1 33 33 H 1.08999 * 109.46877 * 59.99925 * 3 2 1 34 34 H 0.97000 * 120.00299 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.46692 * 180.02562 * 12 2 1 36 36 H 1.08997 * 109.46815 * 60.00393 * 12 2 1 37 37 H 0.96997 * 120.00230 * 245.00299 * 16 13 12 38 38 H 1.09001 * 109.47539 * 45.00136 * 17 16 13 39 39 H 1.09007 * 109.47467 * 285.00073 * 17 16 13 40 40 H 1.08999 * 110.15602 * 212.44010 * 21 20 18 41 41 H 1.08996 * 110.15718 * 90.68071 * 21 20 18 42 42 H 1.07996 * 120.04063 * 0.06845 * 23 22 21 43 43 H 1.08001 * 119.98013 * 180.02562 * 24 23 22 44 44 H 1.07994 * 119.98525 * 180.02562 * 25 24 23 45 45 H 1.08005 * 120.04280 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6836 -1.5663 -1.1316 6 6 1.6606 -0.2679 -2.4821 7 7 0.9756 0.8477 -2.6085 8 14 2.1297 -1.2526 -3.9985 9 1 1.1193 -2.3158 -4.2304 10 1 2.1800 -0.3516 -5.1778 11 1 3.4631 -1.8733 -3.7927 12 6 2.0399 -0.7212 1.2494 13 16 1.4352 0.1340 2.7304 14 8 0.0278 -0.0181 2.8544 15 8 2.0479 1.4102 2.8544 16 7 2.0539 -0.7399 3.9937 17 6 3.5024 -0.7961 4.2055 18 6 3.7921 -1.3320 5.6091 19 1 3.3790 -2.3345 5.7206 20 8 3.2328 -0.4518 6.6012 21 6 4.2825 0.4869 6.8991 22 6 5.5792 -0.2458 6.6453 23 6 6.8808 -0.0059 7.0347 24 6 7.8881 -0.8687 6.6430 25 6 7.5911 -1.9707 5.8626 26 6 6.2862 -2.2118 5.4732 27 6 5.2820 -1.3482 5.8596 28 1 -0.3633 0.6138 0.8242 29 1 -0.3633 0.4070 -0.9437 30 1 -0.3634 -1.0207 0.1194 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7143 1.1594 -3.4891 35 1 3.1299 -0.7208 1.2496 36 1 1.6766 -1.7488 1.2493 37 1 1.4573 -1.2145 4.5934 38 1 3.9236 0.2041 4.1044 39 1 3.9527 -1.4566 3.4644 40 1 4.2243 0.7967 7.9425 41 1 4.2072 1.3549 6.2442 42 1 7.1127 0.8542 7.6452 43 1 8.9074 -0.6821 6.9475 44 1 8.3784 -2.6441 5.5576 45 1 6.0541 -3.0724 4.8632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364069436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:39 Heat of formation + Delta-G solvation = -83.562179 kcal Electronic energy + Delta-G solvation = -27903.475607 eV Core-core repulsion = 24013.402413 eV Total energy + Delta-G solvation = -3890.073194 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.12744 -37.79927 -36.49983 -36.26729 -35.30692 -34.94332 -31.83167 -31.67346 -31.60481 -28.66350 -26.62768 -26.04500 -25.71355 -25.22735 -23.67322 -21.83345 -21.32534 -19.59641 -18.75971 -17.43371 -16.93033 -16.78470 -16.64479 -15.96468 -15.82876 -15.41274 -15.22398 -14.76423 -14.53933 -14.18094 -14.13771 -13.66117 -13.46577 -13.12992 -13.04313 -12.90717 -12.50778 -12.42489 -12.23923 -11.99609 -11.95572 -11.50066 -11.39677 -11.21331 -11.10784 -11.01995 -10.92340 -10.70712 -10.38826 -10.30181 -10.24581 -10.09830 -9.66905 -9.62330 -9.26985 -9.22956 -8.89544 -8.69079 -8.38206 -6.04311 -4.15919 0.82339 0.93959 1.01015 3.17214 3.25713 3.32740 3.33937 3.34564 3.67566 3.88690 4.24762 4.33596 4.40949 4.56710 4.67306 4.69821 4.80623 4.89953 5.07206 5.10936 5.20448 5.24773 5.27249 5.39000 5.53759 5.54911 5.64017 5.69826 5.72776 5.90420 6.02160 6.08317 6.12523 6.37826 6.45602 6.58409 6.69119 6.79129 6.91920 7.03962 7.17007 7.31551 7.49148 7.67346 7.97911 8.09885 8.33431 8.82363 9.49190 10.96803 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015679 B = 0.003078 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.389978 B = 9093.779332 C =10181.325639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.503 4.503 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.882 5.882 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.583 4.583 13 S 2.595 3.405 14 O -0.964 6.964 15 O -0.964 6.964 16 N -1.124 6.124 17 C 0.104 3.896 18 C 0.117 3.883 19 H 0.113 0.887 20 O -0.345 6.345 21 C 0.084 3.916 22 C -0.124 4.124 23 C -0.096 4.096 24 C -0.113 4.113 25 C -0.117 4.117 26 C -0.088 4.088 27 C -0.126 4.126 28 H 0.026 0.974 29 H 0.094 0.906 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.097 0.903 33 H 0.027 0.973 34 H 0.263 0.737 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.414 0.586 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.126 0.874 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.759 -5.234 18.541 22.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.080 3.920 3 C -0.222 4.222 4 C -0.542 4.542 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.717 4.717 13 S 2.693 3.307 14 O -0.954 6.954 15 O -0.954 6.954 16 N -0.881 5.881 17 C -0.024 4.024 18 C 0.057 3.943 19 H 0.131 0.869 20 O -0.263 6.263 21 C 0.007 3.993 22 C -0.124 4.124 23 C -0.114 4.114 24 C -0.131 4.131 25 C -0.135 4.135 26 C -0.106 4.106 27 C -0.127 4.127 28 H 0.045 0.955 29 H 0.113 0.887 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.116 0.884 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.134 0.866 36 H 0.138 0.862 37 H 0.247 0.753 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.117 0.883 41 H 0.102 0.898 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.026 -4.225 18.494 21.942 hybrid contribution 0.711 -1.306 -0.984 1.783 sum 11.737 -5.531 17.510 21.793 Atomic orbital electron populations 1.22213 0.96972 0.99701 1.03022 1.17926 0.92738 0.92296 0.89057 1.22308 0.99662 0.97770 1.02417 1.20931 1.30070 1.13782 0.89433 0.92311 1.24941 0.95083 0.94822 0.98892 1.69816 1.38497 1.20150 1.23536 0.86562 0.78842 0.79966 0.82325 1.20541 1.21194 1.20029 1.30550 1.11157 1.12934 1.17042 1.05576 0.74401 0.75224 0.75531 1.93559 1.29407 1.86640 1.85804 1.93533 1.78136 1.38226 1.85508 1.55704 1.13339 1.71501 1.47531 1.21632 0.81570 1.02883 0.96274 1.21537 0.88847 0.95491 0.88393 0.86914 1.89159 1.34918 1.43974 1.58219 1.21858 0.82658 0.92367 1.02394 1.21118 0.95723 0.96652 0.98922 1.20415 0.90877 0.99888 1.00235 1.21171 0.99149 0.94757 0.97976 1.21162 0.96165 0.97896 0.98276 1.20480 0.91794 0.98771 0.99524 1.20860 0.95556 0.96841 0.99453 0.95476 0.88747 0.94554 0.94567 0.88421 0.95408 0.92707 0.86587 0.86220 0.75281 0.89839 0.90496 0.88301 0.89826 0.85613 0.85424 0.85328 0.85356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 7.58 37.16 0.28 -3.71 16 2 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 3 C -0.16 -4.06 7.80 37.16 0.29 -3.77 16 4 C -0.50 -13.17 8.01 -34.44 -0.28 -13.45 16 5 H 0.06 1.49 7.75 -52.49 -0.41 1.09 16 6 C 0.06 1.71 5.09 -17.82 -0.09 1.62 16 7 N -0.88 -24.09 9.39 55.43 0.52 -23.57 16 8 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 12 C -0.58 -11.32 5.01 37.16 0.19 -11.13 16 13 S 2.59 48.72 4.49 -107.50 -0.48 48.23 16 14 O -0.96 -20.60 15.84 -57.54 -0.91 -21.51 16 15 O -0.96 -20.56 15.12 -57.54 -0.87 -21.43 16 16 N -1.12 -15.78 5.80 -10.61 -0.06 -15.84 16 17 C 0.10 1.27 5.76 -4.04 -0.02 1.24 16 18 C 0.12 1.25 3.54 -27.69 -0.10 1.15 16 19 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 20 O -0.34 -4.22 11.32 -35.23 -0.40 -4.62 16 21 C 0.08 0.86 7.43 36.19 0.27 1.13 16 22 C -0.12 -1.23 6.32 -104.40 -0.66 -1.89 16 23 C -0.10 -0.80 10.04 -39.66 -0.40 -1.20 16 24 C -0.11 -0.84 10.05 -39.55 -0.40 -1.24 16 25 C -0.12 -0.89 10.05 -39.55 -0.40 -1.29 16 26 C -0.09 -0.75 10.04 -39.66 -0.40 -1.15 16 27 C -0.13 -1.27 5.62 -104.40 -0.59 -1.86 16 28 H 0.03 0.64 5.96 -51.93 -0.31 0.33 16 29 H 0.09 2.51 5.99 -51.93 -0.31 2.20 16 30 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.10 2.61 6.01 -51.93 -0.31 2.30 16 33 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 34 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.12 2.02 8.14 -51.92 -0.42 1.59 16 36 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 37 H 0.41 5.10 8.62 -34.47 -0.30 4.80 16 38 H 0.08 1.12 7.58 -51.93 -0.39 0.73 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 44 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 45 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 368.71 15.07 5.56 5.56 Total: -1.00 -33.17 368.71 -10.57 -43.75 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -6.52 Total: 7.52 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: -2.38 Total: -33.63 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.46 Total: -39.41 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -2.18 Total: -47.55 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 48.72 SS G_CDS: -0.48 Total: 48.23 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.17 -10.57 -43.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364069436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.817 kcal (2) G-P(sol) polarization free energy of solvation -33.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds