Wall clock time and date at job start Tue Mar 31 2020 22:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47269 * 2 1 4 4 C 1.50695 * 109.47348 * 239.99715 * 2 1 3 5 5 H 1.07996 * 119.99924 * 237.69757 * 4 2 1 6 6 C 1.37871 * 120.00136 * 57.69461 * 4 2 1 7 7 N 1.31522 * 119.99881 * 6.58294 * 6 4 2 8 8 Si 1.86799 * 120.00472 * 186.58184 * 6 4 2 9 9 H 1.48497 * 109.46983 * 84.99430 * 8 6 4 10 10 H 1.48494 * 109.47337 * 205.00040 * 8 6 4 11 11 H 1.48506 * 109.47041 * 324.99707 * 8 6 4 12 12 C 1.53005 * 109.46703 * 119.99563 * 2 1 3 13 13 S 1.81397 * 109.47449 * 300.00199 * 12 2 1 14 14 O 1.42100 * 110.54687 * 68.37304 * 13 12 2 15 15 O 1.42109 * 110.53927 * 291.62463 * 13 12 2 16 16 N 1.65599 * 104.45129 * 180.02562 * 13 12 2 17 17 C 1.46499 * 119.99874 * 64.99794 * 16 13 12 18 18 C 1.53006 * 109.47069 * 165.00159 * 17 16 13 19 19 H 1.09002 * 110.12931 * 60.24474 * 18 17 16 20 20 O 1.43936 * 110.15291 * 298.54423 * 18 17 16 21 21 C 1.43937 * 104.95280 * 269.32390 * 20 18 17 22 22 C 1.51085 * 105.95485 * 331.55629 * 21 20 18 23 23 C 1.37967 * 132.68722 * 197.64442 * 22 21 20 24 24 C 1.38297 * 119.91841 * 180.02562 * 23 22 21 25 25 C 1.38260 * 120.04291 * 359.97438 * 24 23 22 26 26 C 1.38297 * 120.03938 * 359.97438 * 25 24 23 27 27 C 1.37966 * 119.91921 * 0.27908 * 26 25 24 28 28 H 1.08998 * 109.47242 * 306.67614 * 1 2 3 29 29 H 1.09001 * 109.46888 * 66.66893 * 1 2 3 30 30 H 1.08998 * 109.47629 * 186.67398 * 1 2 3 31 31 H 1.08999 * 109.47041 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47078 * 300.00088 * 3 2 1 33 33 H 1.08999 * 109.46877 * 59.99925 * 3 2 1 34 34 H 0.97000 * 120.00299 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.46692 * 180.02562 * 12 2 1 36 36 H 1.08997 * 109.46815 * 60.00393 * 12 2 1 37 37 H 0.96997 * 120.00230 * 245.00299 * 16 13 12 38 38 H 1.09001 * 109.47539 * 45.00136 * 17 16 13 39 39 H 1.09007 * 109.47467 * 285.00073 * 17 16 13 40 40 H 1.08999 * 110.15602 * 212.44010 * 21 20 18 41 41 H 1.08996 * 110.15718 * 90.68071 * 21 20 18 42 42 H 1.07996 * 120.04063 * 0.06845 * 23 22 21 43 43 H 1.08001 * 119.98013 * 180.02562 * 24 23 22 44 44 H 1.07994 * 119.98525 * 180.02562 * 25 24 23 45 45 H 1.08005 * 120.04280 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6836 -1.5663 -1.1316 6 6 1.6606 -0.2679 -2.4821 7 7 0.9756 0.8477 -2.6085 8 14 2.1297 -1.2526 -3.9985 9 1 1.1193 -2.3158 -4.2304 10 1 2.1800 -0.3516 -5.1778 11 1 3.4631 -1.8733 -3.7927 12 6 2.0399 -0.7212 1.2494 13 16 1.4352 0.1340 2.7304 14 8 0.0278 -0.0181 2.8544 15 8 2.0479 1.4102 2.8544 16 7 2.0539 -0.7399 3.9937 17 6 3.5024 -0.7961 4.2055 18 6 3.7921 -1.3320 5.6091 19 1 3.3790 -2.3345 5.7206 20 8 3.2328 -0.4518 6.6012 21 6 4.2825 0.4869 6.8991 22 6 5.5792 -0.2458 6.6453 23 6 6.8808 -0.0059 7.0347 24 6 7.8881 -0.8687 6.6430 25 6 7.5911 -1.9707 5.8626 26 6 6.2862 -2.2118 5.4732 27 6 5.2820 -1.3482 5.8596 28 1 -0.3633 0.6138 0.8242 29 1 -0.3633 0.4070 -0.9437 30 1 -0.3634 -1.0207 0.1194 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7143 1.1594 -3.4891 35 1 3.1299 -0.7208 1.2496 36 1 1.6766 -1.7488 1.2493 37 1 1.4573 -1.2145 4.5934 38 1 3.9236 0.2041 4.1044 39 1 3.9527 -1.4566 3.4644 40 1 4.2243 0.7967 7.9425 41 1 4.2072 1.3549 6.2442 42 1 7.1127 0.8542 7.6452 43 1 8.9074 -0.6821 6.9475 44 1 8.3784 -2.6441 5.5576 45 1 6.0541 -3.0724 4.8632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364069436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:37 Heat of formation + Delta-G solvation = -105.798225 kcal Electronic energy + Delta-G solvation = -27904.439834 eV Core-core repulsion = 24013.402413 eV Total energy + Delta-G solvation = -3891.037421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.84407 -38.50338 -38.12874 -38.09012 -36.89992 -36.05355 -33.63720 -32.52329 -32.27827 -29.48851 -28.31312 -27.69718 -27.25225 -26.83687 -24.42487 -22.47686 -22.09221 -21.36794 -20.24152 -18.83202 -17.95811 -17.75121 -17.68540 -17.41987 -16.89190 -16.71917 -16.59955 -16.26446 -15.65592 -15.15820 -14.94535 -14.81882 -14.69003 -14.45311 -14.41985 -14.18531 -13.79553 -13.67998 -13.41926 -13.20330 -13.01579 -12.98248 -12.90286 -12.83750 -12.77098 -12.50463 -12.21395 -12.21182 -12.12483 -11.94857 -11.76967 -11.57230 -11.38283 -11.06643 -10.74515 -10.39983 -10.34639 -9.84022 -9.55597 -8.03032 -6.21277 -0.62298 0.26209 0.40181 1.45384 1.47018 1.54952 1.87572 2.44903 2.72371 2.85629 2.88391 3.18978 3.20193 3.32995 3.55957 3.76106 3.96238 4.02861 4.13476 4.18052 4.21553 4.38281 4.42032 4.53365 4.58014 4.59575 4.61304 4.73429 4.85148 4.85466 4.88031 4.92697 4.99015 5.08761 5.10308 5.36680 5.38618 5.44864 5.49223 5.55371 5.65008 5.71853 5.96807 6.00290 6.10157 6.12261 6.34576 6.83489 7.46854 8.96805 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015679 B = 0.003078 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.389978 B = 9093.779332 C =10181.325639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.069 3.931 3 C -0.160 4.160 4 C -0.517 4.517 5 H 0.066 0.934 6 C 0.017 3.983 7 N -0.908 5.908 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.266 1.266 12 C -0.584 4.584 13 S 2.613 3.387 14 O -0.993 6.993 15 O -0.993 6.993 16 N -1.108 6.108 17 C 0.095 3.905 18 C 0.118 3.882 19 H 0.131 0.869 20 O -0.366 6.366 21 C 0.078 3.922 22 C -0.142 4.142 23 C -0.105 4.105 24 C -0.115 4.115 25 C -0.121 4.121 26 C -0.095 4.095 27 C -0.143 4.143 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.030 0.970 34 H 0.261 0.739 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.424 0.576 38 H 0.068 0.932 39 H 0.103 0.897 40 H 0.114 0.886 41 H 0.072 0.928 42 H 0.143 0.857 43 H 0.153 0.847 44 H 0.153 0.847 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.849 -7.227 19.310 24.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.067 3.933 3 C -0.218 4.218 4 C -0.556 4.556 5 H 0.084 0.916 6 C -0.182 4.182 7 N -0.546 5.546 8 Si 0.781 3.219 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.191 1.191 12 C -0.717 4.717 13 S 2.710 3.290 14 O -0.983 6.983 15 O -0.983 6.983 16 N -0.869 5.869 17 C -0.032 4.032 18 C 0.059 3.941 19 H 0.149 0.851 20 O -0.285 6.285 21 C 0.002 3.998 22 C -0.143 4.143 23 C -0.122 4.122 24 C -0.132 4.132 25 C -0.139 4.139 26 C -0.113 4.113 27 C -0.144 4.144 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.156 0.844 36 H 0.160 0.840 37 H 0.260 0.740 38 H 0.086 0.914 39 H 0.121 0.879 40 H 0.132 0.868 41 H 0.090 0.910 42 H 0.160 0.840 43 H 0.171 0.829 44 H 0.171 0.829 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.114 -6.223 19.269 24.125 hybrid contribution 0.129 -0.673 -1.150 1.338 sum 13.243 -6.896 18.120 23.479 Atomic orbital electron populations 1.22162 0.97861 0.99945 1.01707 1.17922 0.92229 0.92163 0.90965 1.22239 0.99773 0.98456 1.01308 1.21288 1.30062 1.13986 0.90299 0.91623 1.25694 0.95240 0.95626 1.01681 1.69961 1.39395 1.21376 1.23894 0.85620 0.78847 0.78525 0.78925 1.20260 1.21460 1.19062 1.30456 1.12599 1.13531 1.15094 1.04750 0.73489 0.74871 0.75873 1.93512 1.31422 1.87030 1.86358 1.93494 1.78472 1.40311 1.86043 1.55217 1.14592 1.70969 1.46085 1.21907 0.79952 1.02895 0.98396 1.21585 0.89739 0.95823 0.86950 0.85132 1.89120 1.36107 1.44594 1.58638 1.21938 0.82883 0.91866 1.03086 1.21221 0.96132 0.96977 0.99939 1.20719 0.90457 1.00723 1.00343 1.21550 1.00143 0.94268 0.97269 1.21538 0.96424 0.98209 0.97681 1.20779 0.91894 0.99036 0.99593 1.20907 0.95303 0.97694 1.00492 0.95411 0.91119 0.93754 0.94180 0.90876 0.95143 0.92930 0.84418 0.84019 0.74007 0.91383 0.87939 0.86765 0.90959 0.83958 0.82945 0.82946 0.83627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.92 7.58 71.98 0.55 -7.38 16 2 C 0.07 3.33 0.52 -52.93 -0.03 3.30 16 3 C -0.16 -8.00 7.80 71.98 0.56 -7.44 16 4 C -0.52 -26.63 8.01 25.60 0.20 -26.43 16 5 H 0.07 3.21 7.75 -2.91 -0.02 3.19 16 6 C 0.02 0.90 5.09 84.65 0.43 1.33 16 7 N -0.91 -50.28 9.39 21.45 0.20 -50.08 16 8 Si 0.95 41.72 29.54 68.60 2.03 43.75 16 9 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 10 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 12 C -0.58 -21.69 5.01 71.98 0.36 -21.32 16 13 S 2.61 96.18 4.49 -56.49 -0.25 95.93 16 14 O -0.99 -42.12 15.84 -127.65 -2.02 -44.14 16 15 O -0.99 -42.38 15.12 -127.65 -1.93 -44.31 16 16 N -1.11 -29.55 5.80 -187.47 -1.09 -30.64 16 17 C 0.10 2.17 5.76 86.38 0.50 2.67 16 18 C 0.12 2.36 3.54 29.97 0.11 2.46 16 19 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 20 O -0.37 -8.75 11.32 -148.98 -1.69 -10.43 16 21 C 0.08 1.59 7.43 71.36 0.53 2.12 16 22 C -0.14 -2.69 6.32 -19.72 -0.12 -2.81 16 23 C -0.10 -1.55 10.04 22.22 0.22 -1.33 16 24 C -0.11 -1.40 10.05 22.29 0.22 -1.17 16 25 C -0.12 -1.48 10.05 22.29 0.22 -1.26 16 26 C -0.10 -1.40 10.04 22.22 0.22 -1.18 16 27 C -0.14 -2.65 5.62 -19.72 -0.11 -2.77 16 28 H 0.03 1.33 5.96 -2.39 -0.01 1.32 16 29 H 0.07 3.84 5.99 -2.39 -0.01 3.83 16 30 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.07 4.00 6.01 -2.39 -0.01 3.99 16 33 H 0.03 1.46 5.46 -2.39 -0.01 1.45 16 34 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 35 H 0.14 4.46 8.14 -2.39 -0.02 4.44 16 36 H 0.14 4.60 8.14 -2.39 -0.02 4.58 16 37 H 0.42 9.80 8.62 -96.75 -0.83 8.97 16 38 H 0.07 1.79 7.58 -2.39 -0.02 1.77 16 39 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 43 H 0.15 1.03 8.06 -2.91 -0.02 1.00 16 44 H 0.15 1.08 8.06 -2.91 -0.02 1.05 16 45 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -71.21 368.71 -0.71 -71.93 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: 0.17 Total: 29.21 kcal Atomic # 6 Polarization: -65.07 SS G_CDS: 3.87 Total: -61.20 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -0.89 Total: -80.72 kcal Atomic # 8 Polarization: -93.25 SS G_CDS: -5.64 Total: -98.88 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 16 Polarization: 96.18 SS G_CDS: -0.25 Total: 95.93 kcal Total: -71.21 -0.71 -71.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364069436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.872 kcal (2) G-P(sol) polarization free energy of solvation -71.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds