Wall clock time and date at job start Tue Mar 31 2020 22:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47255 * 2 1 4 4 C 1.50697 * 109.47496 * 239.99848 * 2 1 3 5 5 H 1.07998 * 120.00295 * 240.00283 * 4 2 1 6 6 C 1.37879 * 119.99820 * 59.99821 * 4 2 1 7 7 N 1.31511 * 120.00173 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00030 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46816 * 90.00158 * 8 6 4 10 10 H 1.48502 * 109.47249 * 209.99774 * 8 6 4 11 11 H 1.48496 * 109.47182 * 330.00323 * 8 6 4 12 12 C 1.53004 * 109.47105 * 119.99854 * 2 1 3 13 13 S 1.81401 * 109.46986 * 299.99938 * 12 2 1 14 14 O 1.42097 * 110.54052 * 68.37750 * 13 12 2 15 15 O 1.42097 * 110.54364 * 291.62354 * 13 12 2 16 16 N 1.65601 * 104.44964 * 180.02562 * 13 12 2 17 17 C 1.46500 * 119.99993 * 65.00186 * 16 13 12 18 18 C 1.52999 * 109.47296 * 165.00516 * 17 16 13 19 19 H 1.08998 * 110.12751 * 306.69459 * 18 17 16 20 20 O 1.44108 * 110.15963 * 68.44852 * 18 17 16 21 21 C 1.43945 * 104.86016 * 90.68314 * 20 18 17 22 22 C 1.51080 * 106.01517 * 28.46065 * 21 20 18 23 23 C 1.37971 * 132.68842 * 162.30429 * 22 21 20 24 24 C 1.38299 * 119.91915 * 180.02562 * 23 22 21 25 25 C 1.38260 * 120.04191 * 359.95804 * 24 23 22 26 26 C 1.38302 * 120.04185 * 0.02562 * 25 24 23 27 27 C 1.37964 * 119.91549 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47091 * 300.00026 * 1 2 3 29 29 H 1.09001 * 109.47121 * 59.99952 * 1 2 3 30 30 H 1.08999 * 109.46780 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47178 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47095 * 300.00064 * 3 2 1 33 33 H 1.09005 * 109.46827 * 59.99527 * 3 2 1 34 34 H 0.96999 * 120.00547 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.46752 * 180.02562 * 12 2 1 36 36 H 1.08999 * 109.47180 * 60.00394 * 12 2 1 37 37 H 0.97003 * 120.00541 * 245.00450 * 16 13 12 38 38 H 1.09000 * 109.47468 * 44.99665 * 17 16 13 39 39 H 1.09002 * 109.47285 * 285.00103 * 17 16 13 40 40 H 1.09002 * 110.15634 * 269.29957 * 21 20 18 41 41 H 1.09004 * 110.15146 * 147.61359 * 21 20 18 42 42 H 1.08000 * 120.04093 * 359.95911 * 23 22 21 43 43 H 1.07998 * 119.97852 * 179.97438 * 24 23 22 44 44 H 1.07997 * 119.98199 * 179.97438 * 25 24 23 45 45 H 1.07995 * 120.03916 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3428 -2.1617 -4.4118 10 1 2.4866 -0.1414 -5.1123 11 1 3.6294 -1.7583 -3.7121 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1340 2.7304 14 8 0.0280 -0.0183 2.8544 15 8 2.0479 1.4101 2.8544 16 7 2.0541 -0.7398 3.9937 17 6 3.5026 -0.7961 4.2055 18 6 3.7924 -1.3320 5.6089 19 1 3.2496 -0.7486 6.3527 20 8 3.4192 -2.7211 5.6970 21 6 4.6073 -3.4465 5.3304 22 6 5.7707 -2.5651 5.7203 23 6 7.1132 -2.8189 5.9130 24 6 7.9643 -1.7912 6.2763 25 6 7.4708 -0.5108 6.4453 26 6 6.1252 -0.2562 6.2518 27 6 5.2762 -1.2815 5.8894 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 0.7089 1.1613 -3.4844 35 1 3.1300 -0.7208 1.2495 36 1 1.6767 -1.7489 1.2493 37 1 1.4575 -1.2145 4.5934 38 1 3.9238 0.2042 4.1043 39 1 3.9528 -1.4565 3.4643 40 1 4.6187 -3.6301 4.2560 41 1 4.6531 -4.3908 5.8729 42 1 7.4986 -3.8192 5.7813 43 1 9.0152 -1.9889 6.4278 44 1 8.1362 0.2910 6.7294 45 1 5.7397 0.7439 6.3843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364069440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:42 Heat of formation + Delta-G solvation = -83.687082 kcal Electronic energy + Delta-G solvation = -27894.545764 eV Core-core repulsion = 24004.467154 eV Total energy + Delta-G solvation = -3890.078610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.14546 -37.81445 -36.53556 -36.26613 -35.34196 -34.95791 -31.83168 -31.66320 -31.62772 -28.66708 -26.61837 -26.07758 -25.70690 -25.22208 -23.69056 -21.85119 -21.32194 -19.59347 -18.76799 -17.45635 -17.05091 -16.74826 -16.64226 -15.95782 -15.84702 -15.33051 -15.30033 -14.74903 -14.57418 -14.34429 -14.11765 -13.64066 -13.46867 -13.08079 -13.00582 -12.83834 -12.56864 -12.49350 -12.26727 -12.07786 -11.97634 -11.48081 -11.42011 -11.19427 -11.06816 -11.06003 -10.92220 -10.69950 -10.38476 -10.30805 -10.26954 -10.11053 -9.65724 -9.63723 -9.30645 -9.21191 -8.90849 -8.66157 -8.39964 -6.03239 -4.15216 0.81450 0.92892 1.00385 3.15075 3.25674 3.32910 3.33614 3.34827 3.62648 3.87478 4.23636 4.31510 4.38992 4.56556 4.66709 4.69609 4.78083 4.90822 5.04861 5.09029 5.20778 5.21975 5.24117 5.37935 5.50849 5.57902 5.63300 5.69606 5.71358 5.89617 6.01770 6.06923 6.12073 6.38607 6.42069 6.57602 6.71116 6.80585 6.91614 7.03353 7.16367 7.32372 7.51258 7.68038 7.98808 8.10091 8.33424 8.83212 9.50134 10.98081 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014142 B = 0.003137 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.416813 B = 8922.715103 C = 9781.397284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 C -0.163 4.163 4 C -0.502 4.502 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.582 4.582 13 S 2.595 3.405 14 O -0.963 6.963 15 O -0.965 6.965 16 N -1.126 6.126 17 C 0.105 3.895 18 C 0.115 3.885 19 H 0.115 0.885 20 O -0.347 6.347 21 C 0.085 3.915 22 C -0.126 4.126 23 C -0.096 4.096 24 C -0.113 4.113 25 C -0.116 4.116 26 C -0.087 4.087 27 C -0.125 4.125 28 H 0.028 0.972 29 H 0.095 0.905 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.095 0.905 33 H 0.028 0.972 34 H 0.262 0.738 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.415 0.585 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.126 0.874 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.977 -6.154 18.161 22.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.080 3.920 3 C -0.221 4.221 4 C -0.541 4.541 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 C -0.716 4.716 13 S 2.692 3.308 14 O -0.954 6.954 15 O -0.955 6.955 16 N -0.883 5.883 17 C -0.022 4.022 18 C 0.056 3.944 19 H 0.133 0.867 20 O -0.266 6.266 21 C 0.009 3.991 22 C -0.126 4.126 23 C -0.114 4.114 24 C -0.131 4.131 25 C -0.134 4.134 26 C -0.105 4.105 27 C -0.126 4.126 28 H 0.047 0.953 29 H 0.114 0.886 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.113 0.887 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.134 0.866 36 H 0.138 0.862 37 H 0.249 0.751 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.117 0.883 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 11.252 -5.241 18.079 21.929 hybrid contribution 0.789 -1.221 -0.986 1.757 sum 12.041 -6.462 17.093 21.884 Atomic orbital electron populations 1.22278 0.96901 1.00674 1.02331 1.17928 0.92841 0.92198 0.89052 1.22272 0.99659 0.97816 1.02364 1.20942 1.31712 1.12052 0.89422 0.92345 1.24938 0.94917 0.94967 0.98921 1.69799 1.36345 1.22548 1.23466 0.86538 0.79164 0.79384 0.82553 1.20643 1.21126 1.19986 1.30522 1.11115 1.12969 1.16954 1.05586 0.74401 0.75182 0.75585 1.93556 1.29410 1.86661 1.85722 1.93533 1.78187 1.38223 1.85546 1.55766 1.13417 1.71168 1.47955 1.21614 0.81527 1.02425 0.96617 1.21576 0.91080 0.84451 0.97260 0.86742 1.89188 1.31784 1.16020 1.89574 1.21826 0.81455 0.95049 1.00812 1.21096 0.95396 0.95830 1.00301 1.20409 0.91457 0.99736 0.99813 1.21173 0.99765 0.92828 0.99313 1.21172 0.95014 0.97160 1.00041 1.20511 0.92938 0.98588 0.98490 1.20840 0.95680 0.94725 1.01334 0.95344 0.88643 0.94444 0.94526 0.88659 0.95297 0.92747 0.86620 0.86208 0.75119 0.88976 0.91313 0.90040 0.88302 0.85635 0.85419 0.85292 0.85263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 7.78 37.16 0.29 -3.79 16 2 C 0.08 2.00 0.52 -155.66 -0.08 1.92 16 3 C -0.16 -4.03 7.78 37.16 0.29 -3.74 16 4 C -0.50 -13.21 8.01 -34.44 -0.28 -13.49 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -24.17 9.35 55.43 0.52 -23.66 16 8 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 C -0.58 -11.41 5.01 37.16 0.19 -11.22 16 13 S 2.59 48.27 4.49 -107.50 -0.48 47.79 16 14 O -0.96 -20.44 15.70 -57.54 -0.90 -21.34 16 15 O -0.96 -20.10 15.11 -57.54 -0.87 -20.97 16 16 N -1.13 -15.77 5.88 -10.61 -0.06 -15.84 16 17 C 0.11 1.29 5.77 -4.04 -0.02 1.27 16 18 C 0.12 1.24 3.50 -27.69 -0.10 1.14 16 19 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 20 O -0.35 -3.93 11.41 -35.23 -0.40 -4.33 16 21 C 0.08 0.78 7.37 36.19 0.27 1.05 16 22 C -0.13 -1.20 6.32 -104.40 -0.66 -1.86 16 23 C -0.10 -0.77 10.04 -39.66 -0.40 -1.17 16 24 C -0.11 -0.83 10.05 -39.55 -0.40 -1.23 16 25 C -0.12 -0.89 10.05 -39.55 -0.40 -1.29 16 26 C -0.09 -0.78 10.04 -39.66 -0.40 -1.18 16 27 C -0.12 -1.26 5.62 -104.40 -0.59 -1.85 16 28 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 29 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 33 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 34 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 36 H 0.12 2.15 8.14 -51.92 -0.42 1.73 16 37 H 0.42 5.21 8.61 -34.48 -0.30 4.91 16 38 H 0.09 1.13 7.69 -51.93 -0.40 0.73 16 39 H 0.07 0.79 7.96 -51.93 -0.41 0.38 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 44 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 45 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 368.43 15.07 5.55 5.55 Total: -1.00 -32.76 368.43 -10.55 -43.30 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -6.50 Total: 7.66 kcal Atomic # 6 Polarization: -31.43 SS G_CDS: -2.38 Total: -33.80 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.46 Total: -39.49 kcal Atomic # 8 Polarization: -44.47 SS G_CDS: -2.17 Total: -46.64 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 48.27 SS G_CDS: -0.48 Total: 47.79 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.76 -10.55 -43.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364069440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.384 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds