Wall clock time and date at job start Tue Mar 31 2020 22:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47255 * 2 1 4 4 C 1.50697 * 109.47496 * 239.99848 * 2 1 3 5 5 H 1.07998 * 120.00295 * 240.00283 * 4 2 1 6 6 C 1.37879 * 119.99820 * 59.99821 * 4 2 1 7 7 N 1.31511 * 120.00173 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00030 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46816 * 90.00158 * 8 6 4 10 10 H 1.48502 * 109.47249 * 209.99774 * 8 6 4 11 11 H 1.48496 * 109.47182 * 330.00323 * 8 6 4 12 12 C 1.53004 * 109.47105 * 119.99854 * 2 1 3 13 13 S 1.81401 * 109.46986 * 299.99938 * 12 2 1 14 14 O 1.42097 * 110.54052 * 68.37750 * 13 12 2 15 15 O 1.42097 * 110.54364 * 291.62354 * 13 12 2 16 16 N 1.65601 * 104.44964 * 180.02562 * 13 12 2 17 17 C 1.46500 * 119.99993 * 65.00186 * 16 13 12 18 18 C 1.52999 * 109.47296 * 165.00516 * 17 16 13 19 19 H 1.08998 * 110.12751 * 306.69459 * 18 17 16 20 20 O 1.44108 * 110.15963 * 68.44852 * 18 17 16 21 21 C 1.43945 * 104.86016 * 90.68314 * 20 18 17 22 22 C 1.51080 * 106.01517 * 28.46065 * 21 20 18 23 23 C 1.37971 * 132.68842 * 162.30429 * 22 21 20 24 24 C 1.38299 * 119.91915 * 180.02562 * 23 22 21 25 25 C 1.38260 * 120.04191 * 359.95804 * 24 23 22 26 26 C 1.38302 * 120.04185 * 0.02562 * 25 24 23 27 27 C 1.37964 * 119.91549 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47091 * 300.00026 * 1 2 3 29 29 H 1.09001 * 109.47121 * 59.99952 * 1 2 3 30 30 H 1.08999 * 109.46780 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47178 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47095 * 300.00064 * 3 2 1 33 33 H 1.09005 * 109.46827 * 59.99527 * 3 2 1 34 34 H 0.96999 * 120.00547 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.46752 * 180.02562 * 12 2 1 36 36 H 1.08999 * 109.47180 * 60.00394 * 12 2 1 37 37 H 0.97003 * 120.00541 * 245.00450 * 16 13 12 38 38 H 1.09000 * 109.47468 * 44.99665 * 17 16 13 39 39 H 1.09002 * 109.47285 * 285.00103 * 17 16 13 40 40 H 1.09002 * 110.15634 * 269.29957 * 21 20 18 41 41 H 1.09004 * 110.15146 * 147.61359 * 21 20 18 42 42 H 1.08000 * 120.04093 * 359.95911 * 23 22 21 43 43 H 1.07998 * 119.97852 * 179.97438 * 24 23 22 44 44 H 1.07997 * 119.98199 * 179.97438 * 25 24 23 45 45 H 1.07995 * 120.03916 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3428 -2.1617 -4.4118 10 1 2.4866 -0.1414 -5.1123 11 1 3.6294 -1.7583 -3.7121 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1340 2.7304 14 8 0.0280 -0.0183 2.8544 15 8 2.0479 1.4101 2.8544 16 7 2.0541 -0.7398 3.9937 17 6 3.5026 -0.7961 4.2055 18 6 3.7924 -1.3320 5.6089 19 1 3.2496 -0.7486 6.3527 20 8 3.4192 -2.7211 5.6970 21 6 4.6073 -3.4465 5.3304 22 6 5.7707 -2.5651 5.7203 23 6 7.1132 -2.8189 5.9130 24 6 7.9643 -1.7912 6.2763 25 6 7.4708 -0.5108 6.4453 26 6 6.1252 -0.2562 6.2518 27 6 5.2762 -1.2815 5.8894 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 0.7089 1.1613 -3.4844 35 1 3.1300 -0.7208 1.2495 36 1 1.6767 -1.7489 1.2493 37 1 1.4575 -1.2145 4.5934 38 1 3.9238 0.2042 4.1043 39 1 3.9528 -1.4565 3.4643 40 1 4.6187 -3.6301 4.2560 41 1 4.6531 -4.3908 5.8729 42 1 7.4986 -3.8192 5.7813 43 1 9.0152 -1.9889 6.4278 44 1 8.1362 0.2910 6.7294 45 1 5.7397 0.7439 6.3843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364069440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:41 Heat of formation + Delta-G solvation = -105.362552 kcal Electronic energy + Delta-G solvation = -27895.485683 eV Core-core repulsion = 24004.467154 eV Total energy + Delta-G solvation = -3891.018529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.84096 -38.50063 -38.13272 -38.11589 -36.92434 -36.06898 -33.63620 -32.51743 -32.27955 -29.48270 -28.31127 -27.69024 -27.25886 -26.82997 -24.44526 -22.47666 -22.08142 -21.36159 -20.25476 -18.85309 -18.01543 -17.81854 -17.63814 -17.37315 -16.89360 -16.71377 -16.60468 -16.26501 -15.58876 -15.29837 -15.04452 -14.80244 -14.66822 -14.42750 -14.31729 -14.20903 -13.83723 -13.62934 -13.38124 -13.31414 -13.04545 -12.96650 -12.89165 -12.86466 -12.76673 -12.51048 -12.21374 -12.18034 -12.11750 -11.97112 -11.77504 -11.56925 -11.38748 -11.08846 -10.73031 -10.41944 -10.38174 -9.84394 -9.55306 -8.03077 -6.21778 -0.63109 0.25749 0.39416 1.43972 1.45702 1.54322 1.84873 2.44111 2.71804 2.82187 2.87247 3.17280 3.19524 3.31935 3.57223 3.74530 3.97053 4.01421 4.11996 4.16273 4.20894 4.35994 4.44880 4.54054 4.58293 4.60150 4.62067 4.73845 4.83264 4.86563 4.87920 4.93364 4.99166 5.08835 5.09280 5.35930 5.38526 5.44617 5.50944 5.54867 5.64515 5.71254 5.97590 5.99717 6.07176 6.11728 6.34109 6.82853 7.46504 8.96822 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014142 B = 0.003137 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.416813 B = 8922.715103 C = 9781.397284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.069 3.931 3 C -0.159 4.159 4 C -0.518 4.518 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.908 5.908 8 Si 0.954 3.046 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.267 1.267 12 C -0.586 4.586 13 S 2.616 3.384 14 O -0.991 6.991 15 O -0.988 6.988 16 N -1.110 6.110 17 C 0.097 3.903 18 C 0.119 3.881 19 H 0.119 0.881 20 O -0.363 6.363 21 C 0.079 3.921 22 C -0.139 4.139 23 C -0.102 4.102 24 C -0.114 4.114 25 C -0.121 4.121 26 C -0.100 4.100 27 C -0.145 4.145 28 H 0.032 0.968 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.033 0.967 34 H 0.261 0.739 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.424 0.576 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.116 0.884 42 H 0.146 0.854 43 H 0.153 0.847 44 H 0.150 0.850 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.031 -7.563 19.110 24.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.067 3.933 3 C -0.217 4.217 4 C -0.557 4.557 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.546 5.546 8 Si 0.781 3.219 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.191 1.191 12 C -0.719 4.719 13 S 2.713 3.287 14 O -0.981 6.981 15 O -0.978 6.978 16 N -0.870 5.870 17 C -0.029 4.029 18 C 0.060 3.940 19 H 0.136 0.864 20 O -0.282 6.282 21 C 0.003 3.997 22 C -0.139 4.139 23 C -0.120 4.120 24 C -0.132 4.132 25 C -0.139 4.139 26 C -0.118 4.118 27 C -0.146 4.146 28 H 0.051 0.949 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.260 0.740 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.134 0.866 42 H 0.164 0.836 43 H 0.171 0.829 44 H 0.168 0.832 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 13.305 -6.660 19.028 24.154 hybrid contribution 0.216 -0.796 -1.203 1.458 sum 13.521 -7.456 17.825 23.582 Atomic orbital electron populations 1.22221 0.97815 1.00494 1.01379 1.17922 0.92297 0.92221 0.90824 1.22199 0.99842 0.98270 1.01393 1.21292 1.31687 1.12274 0.90412 0.91913 1.25679 0.95197 0.95638 1.01670 1.69941 1.37201 1.23652 1.23852 0.85612 0.78871 0.78244 0.79222 1.20437 1.21224 1.19125 1.30456 1.12454 1.13421 1.15534 1.04673 0.73476 0.74824 0.75701 1.93511 1.31387 1.87050 1.86199 1.93499 1.78448 1.39890 1.85950 1.55300 1.14614 1.70685 1.46437 1.21851 0.79928 1.02876 0.98263 1.21492 0.91997 0.84352 0.96146 0.86360 1.89160 1.33011 1.16339 1.89656 1.21993 0.80826 0.95520 1.01325 1.21255 0.96131 0.95612 1.00898 1.20739 0.90972 1.01056 0.99256 1.21556 1.01023 0.92461 0.98112 1.21506 0.94810 0.98160 0.99426 1.20758 0.93594 0.98841 0.98654 1.20874 0.95259 0.95566 1.02913 0.94877 0.90983 0.94165 0.94041 0.91061 0.94801 0.92919 0.84653 0.84556 0.73980 0.89046 0.90346 0.89697 0.86633 0.83591 0.82886 0.83183 0.84526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.09 7.78 71.98 0.56 -7.53 16 2 C 0.07 3.36 0.52 -52.93 -0.03 3.33 16 3 C -0.16 -7.90 7.78 71.98 0.56 -7.34 16 4 C -0.52 -26.96 8.01 25.60 0.21 -26.75 16 5 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 6 C 0.02 0.93 5.15 84.66 0.44 1.37 16 7 N -0.91 -50.37 9.35 21.45 0.20 -50.17 16 8 Si 0.95 42.08 29.54 68.60 2.03 44.11 16 9 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 12 C -0.59 -22.23 5.01 71.98 0.36 -21.87 16 13 S 2.62 95.16 4.49 -56.49 -0.25 94.90 16 14 O -0.99 -41.62 15.70 -127.65 -2.00 -43.62 16 15 O -0.99 -40.58 15.11 -127.65 -1.93 -42.51 16 16 N -1.11 -29.65 5.88 -187.49 -1.10 -30.75 16 17 C 0.10 2.25 5.77 86.38 0.50 2.75 16 18 C 0.12 2.43 3.50 29.97 0.11 2.54 16 19 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 20 O -0.36 -7.75 11.41 -148.98 -1.70 -9.45 16 21 C 0.08 1.33 7.37 71.36 0.53 1.85 16 22 C -0.14 -2.40 6.32 -19.72 -0.12 -2.52 16 23 C -0.10 -1.39 10.04 22.22 0.22 -1.17 16 24 C -0.11 -1.36 10.05 22.29 0.22 -1.14 16 25 C -0.12 -1.59 10.05 22.29 0.22 -1.37 16 26 C -0.10 -1.65 10.04 22.22 0.22 -1.43 16 27 C -0.15 -2.75 5.62 -19.72 -0.11 -2.86 16 28 H 0.03 1.58 5.46 -2.39 -0.01 1.57 16 29 H 0.07 3.93 6.07 -2.39 -0.01 3.92 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 33 H 0.03 1.60 5.46 -2.38 -0.01 1.58 16 34 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 35 H 0.14 4.53 8.14 -2.39 -0.02 4.51 16 36 H 0.14 4.67 8.14 -2.39 -0.02 4.65 16 37 H 0.42 10.08 8.61 -96.74 -0.83 9.25 16 38 H 0.09 2.14 7.69 -2.39 -0.02 2.13 16 39 H 0.08 1.67 7.96 -2.39 -0.02 1.65 16 40 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16 42 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 43 H 0.15 0.99 8.06 -2.91 -0.02 0.96 16 44 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 45 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -69.37 368.43 -0.71 -70.08 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: 0.17 Total: 29.54 kcal Atomic # 6 Polarization: -66.01 SS G_CDS: 3.88 Total: -62.13 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -0.90 Total: -80.92 kcal Atomic # 8 Polarization: -89.95 SS G_CDS: -5.63 Total: -95.58 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 95.16 SS G_CDS: -0.25 Total: 94.90 kcal Total: -69.37 -0.71 -70.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364069440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.285 kcal (2) G-P(sol) polarization free energy of solvation -69.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds