Wall clock time and date at job start Tue Mar 31 2020 23:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.46230 * 2 1 4 4 C 1.53035 * 109.46254 * 240.02566 * 2 1 3 5 5 C 1.53186 * 109.31659 * 178.60211 * 4 2 1 6 6 N 1.46929 * 108.76409 * 54.65182 * 5 4 2 7 7 S 1.65608 * 120.62855 * 126.36554 * 6 5 4 8 8 O 1.42098 * 104.27322 * 26.09403 * 7 6 5 9 9 O 1.42093 * 104.27583 * 153.95096 * 7 6 5 10 10 C 1.81398 * 104.44623 * 270.02238 * 7 6 5 11 11 C 1.50702 * 109.46742 * 180.02562 * 10 7 6 12 12 C 1.38639 * 119.74755 * 269.72898 * 11 10 7 13 13 C 1.37618 * 120.24538 * 179.72545 * 12 11 10 14 14 C 1.40711 * 119.74626 * 0.52300 * 13 12 11 15 15 C 1.41398 * 120.24481 * 179.72789 * 14 13 12 16 16 H 1.07999 * 120.00133 * 24.41007 * 15 14 13 17 17 C 1.39950 * 119.99782 * 204.40685 * 15 14 13 18 18 N 1.30818 * 120.00153 * 17.86037 * 17 15 14 19 19 Si 1.86803 * 119.99652 * 197.85512 * 17 15 14 20 20 H 1.48498 * 109.46817 * 90.00519 * 19 17 15 21 21 H 1.48501 * 109.47066 * 210.00194 * 19 17 15 22 22 H 1.48491 * 109.47189 * 330.00198 * 19 17 15 23 23 C 1.40723 * 119.51375 * 359.74913 * 14 13 12 24 24 C 1.37615 * 119.73883 * 0.02562 * 23 14 13 25 25 C 1.46920 * 118.74182 * 306.38304 * 6 5 4 26 26 C 1.53047 * 109.45924 * 119.96960 * 2 1 3 27 27 H 1.08999 * 109.49414 * 301.33510 * 26 2 1 28 28 O 1.42901 * 109.49735 * 61.43560 * 26 2 1 29 29 H 1.09007 * 109.47481 * 300.00478 * 1 2 3 30 30 H 1.09002 * 109.47305 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47279 * 60.00140 * 1 2 3 32 32 H 1.09010 * 109.49727 * 298.56525 * 4 2 1 33 33 H 1.08997 * 109.49846 * 58.65934 * 4 2 1 34 34 H 1.09007 * 109.59692 * 294.86838 * 5 4 2 35 35 H 1.08996 * 109.70649 * 174.50472 * 5 4 2 36 36 H 1.09000 * 109.47339 * 299.99700 * 10 7 6 37 37 H 1.08996 * 109.46981 * 60.00196 * 10 7 6 38 38 H 1.07998 * 119.87675 * 359.97407 * 12 11 10 39 39 H 1.08002 * 120.12482 * 180.27253 * 13 12 11 40 40 H 0.96999 * 120.00559 * 179.97438 * 18 17 15 41 41 H 1.07996 * 120.13074 * 179.97438 * 23 14 13 42 42 H 1.08006 * 119.87262 * 180.02562 * 24 23 14 43 43 H 1.09001 * 109.58964 * 293.82767 * 25 6 5 44 44 H 1.08999 * 109.70574 * 173.46428 * 25 6 5 45 45 H 0.96690 * 113.99748 * 180.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5713 -0.6885 -1.2643 6 7 4.0678 -1.2488 0.0000 7 16 5.1658 -2.4886 -0.0001 8 8 5.8513 -2.3493 -1.2370 9 8 5.8510 -2.3499 1.2369 10 6 4.1508 -3.9920 -0.0006 11 6 5.0473 -5.2033 -0.0001 12 6 5.4526 -5.7596 -1.2035 13 6 6.2759 -6.8624 -1.2150 14 6 6.6973 -7.4318 0.0008 15 6 7.5385 -8.5683 0.0012 16 1 8.1706 -8.7726 -0.8503 17 6 7.5520 -9.4284 1.1052 18 7 6.5692 -9.4004 1.9682 19 14 8.9732 -10.6164 1.3462 20 1 10.0326 -9.9630 2.1562 21 1 8.4894 -11.8306 2.0510 22 1 9.5275 -11.0000 0.0231 23 6 6.2750 -6.8620 1.2163 24 6 5.4556 -5.7565 1.2037 25 6 3.5714 -0.6886 1.2642 26 6 2.0398 -0.7209 1.2501 27 1 1.6572 -0.2208 2.1398 28 8 1.5914 -2.0776 1.2346 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 1.6978 -1.7559 -1.2380 33 1 1.6572 -0.2211 -2.1397 34 1 3.9142 0.3411 -1.3673 35 1 3.9437 -1.2828 -2.0986 36 1 3.5215 -4.0059 0.8893 37 1 3.5218 -4.0054 -0.8906 38 1 5.1243 -5.3236 -2.1354 39 1 6.5940 -7.2915 -2.1537 40 1 6.5783 -9.9968 2.7331 41 1 6.5921 -7.2912 2.1552 42 1 5.1305 -5.3173 2.1354 43 1 3.9142 0.3409 1.3674 44 1 3.9416 -1.2825 2.0999 45 1 1.8780 -2.5953 1.9993 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364810933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:45 Heat of formation + Delta-G solvation = -138.078293 kcal Electronic energy + Delta-G solvation = -28043.727334 eV Core-core repulsion = 24151.290144 eV Total energy + Delta-G solvation = -3892.437190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.22199 -39.59515 -38.20452 -36.98239 -36.33781 -35.94908 -34.44491 -33.21026 -31.29516 -31.21579 -29.54414 -28.42555 -25.98378 -24.21789 -23.71228 -23.02495 -22.11684 -20.95906 -19.92134 -19.31000 -18.86395 -17.73113 -17.45148 -17.20885 -16.92305 -16.15964 -15.89178 -15.83934 -15.69868 -15.57702 -15.26835 -14.72795 -14.52215 -14.38636 -13.95718 -13.92265 -13.66405 -13.49615 -13.30543 -13.26276 -13.17794 -13.14576 -12.97770 -12.79070 -12.59196 -12.55491 -12.42702 -12.32047 -11.98900 -11.75120 -11.59496 -11.54457 -11.35911 -11.24281 -11.05010 -10.88400 -9.84039 -9.48462 -9.26483 -8.72186 -6.41517 -0.75641 0.86857 1.05127 1.37284 1.49898 1.50893 1.76621 2.17602 2.62281 2.92218 3.14808 3.44992 3.59980 3.64343 3.82154 3.85786 3.98302 4.03391 4.15237 4.23404 4.42375 4.48812 4.49619 4.62401 4.72395 4.73337 4.76862 4.79572 4.91517 4.93951 4.97401 5.07728 5.08634 5.21840 5.24194 5.30725 5.33579 5.43074 5.59858 5.62510 5.68473 5.82571 6.01103 6.03246 6.26957 6.59342 6.83971 6.91664 6.92509 8.24355 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.024924 B = 0.002774 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.159931 B =10090.606400 C =10346.975351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.083 4.083 3 H 0.096 0.904 4 C -0.124 4.124 5 C 0.113 3.887 6 N -0.991 5.991 7 S 2.597 3.403 8 O -0.996 6.996 9 O -0.995 6.995 10 C -0.515 4.515 11 C -0.232 4.232 12 C -0.079 4.079 13 C -0.245 4.245 14 C 0.084 3.916 15 C -0.490 4.490 16 H 0.080 0.920 17 C 0.035 3.965 18 N -0.814 5.814 19 Si 0.986 3.014 20 H -0.262 1.262 21 H -0.264 1.264 22 H -0.257 1.257 23 C -0.193 4.193 24 C -0.090 4.090 25 C 0.080 3.920 26 C 0.097 3.903 27 H 0.087 0.913 28 O -0.572 6.572 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.121 0.879 39 H 0.105 0.895 40 H 0.292 0.708 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.289 17.348 -0.066 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.102 4.102 3 H 0.114 0.886 4 C -0.163 4.163 5 C -0.011 4.011 6 N -0.829 5.829 7 S 2.698 3.302 8 O -0.987 6.987 9 O -0.985 6.985 10 C -0.646 4.646 11 C -0.236 4.236 12 C -0.098 4.098 13 C -0.265 4.265 14 C 0.081 3.919 15 C -0.519 4.519 16 H 0.099 0.901 17 C -0.182 4.182 18 N -0.439 5.439 19 Si 0.806 3.194 20 H -0.187 1.187 21 H -0.188 1.188 22 H -0.181 1.181 23 C -0.213 4.213 24 C -0.110 4.110 25 C -0.045 4.045 26 C 0.037 3.963 27 H 0.104 0.896 28 O -0.380 6.380 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.167 0.833 37 H 0.162 0.838 38 H 0.139 0.861 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.126 0.874 42 H 0.134 0.866 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -11.726 17.629 -0.420 21.177 hybrid contribution 0.389 -1.327 0.687 1.544 sum -11.338 16.302 0.267 19.858 Atomic orbital electron populations 1.21707 0.94101 1.01773 1.02024 1.21164 0.96589 0.99158 0.93240 0.88566 1.21912 0.93621 1.02033 0.98749 1.21621 0.95266 1.00275 0.83977 1.57546 1.62638 1.50133 1.12616 1.05518 0.75727 0.76175 0.72800 1.93475 1.72390 1.86128 1.46666 1.93477 1.72371 1.86135 1.46543 1.28986 1.10683 1.12215 1.12736 1.18583 1.09412 1.01989 0.93649 1.20859 0.96798 0.95262 0.96905 1.21220 1.06293 1.01870 0.97124 1.18089 0.89976 0.91915 0.91879 1.19962 1.21537 1.07139 1.03268 0.90139 1.26845 0.98312 0.99200 0.93830 1.69851 1.29144 1.33741 1.11183 0.85144 0.77628 0.76933 0.79689 1.18712 1.18850 1.18078 1.21339 1.03977 0.97651 0.98328 1.20912 0.97562 0.95697 0.96794 1.22412 0.95992 1.01383 0.84740 1.22292 0.90992 0.83705 0.99331 0.89554 1.86508 1.77957 1.23090 1.50416 0.92171 0.93317 0.92036 0.91685 0.89202 0.89849 0.90117 0.83296 0.83838 0.86070 0.87721 0.89696 0.87408 0.86620 0.88923 0.89236 0.76442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.06 71.98 0.65 -0.99 16 2 C -0.08 -1.04 2.51 -10.77 -0.03 -1.07 16 3 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.12 -1.87 5.22 30.67 0.16 -1.71 16 5 C 0.11 2.16 6.32 86.36 0.55 2.71 16 6 N -0.99 -22.71 3.16 -513.07 -1.62 -24.34 16 7 S 2.60 86.03 5.39 -56.49 -0.30 85.73 16 8 O -1.00 -39.55 16.72 -127.65 -2.13 -41.68 16 9 O -1.00 -38.96 16.73 -127.65 -2.14 -41.09 16 10 C -0.52 -16.18 6.30 71.24 0.45 -15.73 16 11 C -0.23 -10.01 5.16 -19.67 -0.10 -10.12 16 12 C -0.08 -3.59 9.67 22.22 0.21 -3.38 16 13 C -0.25 -12.46 9.80 22.73 0.22 -12.24 16 14 C 0.08 4.67 5.58 -21.29 -0.12 4.55 16 15 C -0.49 -26.64 9.05 23.46 0.21 -26.43 16 16 H 0.08 4.21 7.91 -2.91 -0.02 4.18 16 17 C 0.03 1.74 5.14 85.26 0.44 2.17 16 18 N -0.81 -42.09 10.95 21.83 0.24 -41.85 16 19 Si 0.99 37.90 29.60 68.60 2.03 39.93 16 20 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 21 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 22 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 23 C -0.19 -10.41 8.70 22.73 0.20 -10.21 16 24 C -0.09 -4.26 9.67 22.22 0.21 -4.05 16 25 C 0.08 1.39 5.95 86.37 0.51 1.90 16 26 C 0.10 1.30 3.23 30.68 0.10 1.40 16 27 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 28 O -0.57 -9.14 11.90 -148.98 -1.77 -10.92 16 29 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.05 0.75 7.72 -2.39 -0.02 0.73 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 1.18 7.61 -2.38 -0.02 1.16 16 33 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.08 1.72 7.09 -2.39 -0.02 1.70 16 36 H 0.15 3.81 8.08 -2.39 -0.02 3.79 16 37 H 0.14 3.86 8.08 -2.39 -0.02 3.84 16 38 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 39 H 0.10 4.98 8.06 -2.91 -0.02 4.95 16 40 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 41 H 0.11 5.98 6.15 -2.91 -0.02 5.96 16 42 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 43 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 44 H 0.09 1.64 7.10 -2.39 -0.02 1.62 16 45 H 0.39 4.22 9.08 -74.06 -0.67 3.55 16 Total: -1.00 -72.37 375.42 -1.71 -74.07 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: 0.32 Total: 33.33 kcal Atomic # 6 Polarization: -76.86 SS G_CDS: 3.67 Total: -73.18 kcal Atomic # 7 Polarization: -64.80 SS G_CDS: -1.38 Total: -66.18 kcal Atomic # 8 Polarization: -87.65 SS G_CDS: -6.04 Total: -93.69 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Atomic # 16 Polarization: 86.03 SS G_CDS: -0.30 Total: 85.73 kcal Total: -72.37 -1.71 -74.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364810933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.004 kcal (2) G-P(sol) polarization free energy of solvation -72.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds