Wall clock time and date at job start Tue Mar 31 2020 23:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46094 * 2 1 4 4 C 1.53037 * 109.46106 * 240.03156 * 2 1 3 5 5 C 1.53200 * 109.31459 * 178.62517 * 4 2 1 6 6 N 1.46919 * 108.77323 * 54.63322 * 5 4 2 7 7 S 1.65602 * 120.63260 * 126.37145 * 6 5 4 8 8 O 1.42107 * 104.27411 * 333.92712 * 7 6 5 9 9 O 1.42101 * 104.28191 * 206.07256 * 7 6 5 10 10 C 1.81400 * 104.44893 * 89.99472 * 7 6 5 11 11 C 1.50703 * 109.47059 * 180.02562 * 10 7 6 12 12 C 1.38629 * 119.75251 * 90.00191 * 11 10 7 13 13 C 1.37610 * 120.25244 * 179.70514 * 12 11 10 14 14 C 1.40718 * 119.74394 * 0.27583 * 13 12 11 15 15 C 1.41403 * 120.24537 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99744 * 24.37645 * 15 14 13 17 17 C 1.39941 * 120.00009 * 204.37575 * 15 14 13 18 18 N 1.30826 * 119.99936 * 17.84547 * 17 15 14 19 19 Si 1.86794 * 120.00203 * 197.84149 * 17 15 14 20 20 H 1.48500 * 109.47239 * 90.00058 * 19 17 15 21 21 H 1.48496 * 109.47389 * 210.00323 * 19 17 15 22 22 H 1.48500 * 109.46960 * 329.99948 * 19 17 15 23 23 C 1.40715 * 119.50980 * 359.97438 * 14 13 12 24 24 C 1.37611 * 119.74654 * 0.02562 * 23 14 13 25 25 C 1.46931 * 118.74029 * 306.64429 * 6 5 4 26 26 C 1.52762 * 109.00871 * 53.31151 * 25 6 5 27 27 H 1.09004 * 109.38573 * 65.51154 * 26 25 6 28 28 O 1.42894 * 109.56455 * 185.55806 * 26 25 6 29 29 H 1.09007 * 109.46826 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47324 * 299.97034 * 1 2 3 31 31 H 1.08998 * 109.47615 * 59.97456 * 1 2 3 32 32 H 1.09004 * 109.49948 * 58.67138 * 4 2 1 33 33 H 1.08998 * 109.50209 * 298.57609 * 4 2 1 34 34 H 1.09000 * 109.58204 * 294.84323 * 5 4 2 35 35 H 1.08994 * 109.58438 * 174.41982 * 5 4 2 36 36 H 1.09001 * 109.46644 * 60.00741 * 10 7 6 37 37 H 1.08994 * 109.47496 * 300.00329 * 10 7 6 38 38 H 1.08003 * 119.87231 * 359.97438 * 12 11 10 39 39 H 1.07997 * 120.13222 * 180.29734 * 13 12 11 40 40 H 0.96996 * 120.00202 * 180.02562 * 18 17 15 41 41 H 1.08006 * 120.12439 * 180.02562 * 23 14 13 42 42 H 1.08000 * 119.87807 * 180.02562 * 24 23 14 43 43 H 1.08997 * 109.58885 * 173.14743 * 25 6 5 44 44 H 1.09004 * 109.58262 * 293.57070 * 25 6 5 45 45 H 0.96706 * 113.99636 * 299.96141 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5714 -0.6888 -1.2641 6 7 4.0677 -1.2491 0.0002 7 16 5.1654 -2.4890 0.0004 8 8 4.9445 -3.1528 -1.2366 9 8 4.9446 -3.1525 1.2374 10 6 6.7807 -1.6635 0.0001 11 6 7.8746 -2.7001 -0.0004 12 6 8.3736 -3.1730 -1.2042 13 6 9.3767 -4.1151 -1.2166 14 6 9.8917 -4.6026 -0.0012 15 6 10.9228 -5.5702 -0.0016 16 1 11.5820 -5.6565 -0.8528 17 6 11.0891 -6.4160 1.1008 18 7 10.1165 -6.5657 1.9630 19 14 12.6996 -7.3312 1.3414 20 1 13.6246 -6.5004 2.1534 21 1 12.4401 -8.6136 2.0437 22 1 13.3145 -7.6072 0.0182 23 6 9.3739 -4.1192 1.2146 24 6 8.3709 -3.1771 1.2031 25 6 3.5669 -0.6926 1.2644 26 6 2.0396 -0.7208 1.2502 27 1 1.6969 -1.7555 1.2386 28 8 1.5380 -0.0651 2.4165 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5134 0.8902 31 1 -0.3634 0.5142 -0.8897 32 1 1.6573 -0.2207 -2.1399 33 1 1.6977 -1.7556 -1.2384 34 1 3.9144 0.3406 -1.3672 35 1 3.9416 -1.2848 -2.0982 36 1 6.8704 -1.0406 0.8900 37 1 6.8703 -1.0408 -0.8899 38 1 7.9767 -2.7975 -2.1358 39 1 9.7673 -4.4786 -2.1555 40 1 10.2319 -7.1517 2.7273 41 1 9.7622 -4.4862 2.1533 42 1 7.9721 -2.8043 2.1350 43 1 3.9342 -1.2910 2.0981 44 1 3.9096 0.3366 1.3717 45 1 1.8218 -0.4696 3.2478 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364810934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:50 Heat of formation + Delta-G solvation = -116.799504 kcal Electronic energy + Delta-G solvation = -27573.786029 eV Core-core repulsion = 23682.271557 eV Total energy + Delta-G solvation = -3891.514472 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.40771 -37.80563 -36.75624 -36.04008 -35.45712 -34.19072 -33.69452 -31.52732 -30.24504 -29.46649 -27.97216 -27.60702 -24.25144 -23.43348 -22.89624 -21.19197 -20.50704 -20.28455 -18.61219 -17.68862 -17.46314 -17.26258 -16.12457 -16.04391 -15.45460 -15.13290 -14.87188 -14.56213 -14.46953 -14.01661 -13.84046 -13.79191 -13.42470 -13.15073 -12.70128 -12.61657 -12.40496 -12.19488 -12.10480 -11.99343 -11.91154 -11.73746 -11.62275 -11.50600 -11.38744 -11.18673 -11.17752 -11.03345 -10.77127 -10.63672 -10.43733 -10.39001 -10.30698 -9.82514 -9.55194 -9.29581 -8.97302 -7.64158 -7.47089 -6.93558 -4.51536 0.54032 2.60771 2.89481 2.93270 2.99431 3.02944 3.08526 3.80856 3.92316 4.21768 4.37666 4.46136 4.50449 4.56852 4.69922 4.85469 5.03165 5.05791 5.20786 5.26234 5.28310 5.42315 5.46091 5.51670 5.55225 5.57497 5.66266 5.76563 5.81282 5.99267 6.03080 6.13103 6.15575 6.16904 6.22956 6.51870 6.81070 6.90106 7.07391 7.16290 7.41412 7.43485 7.64172 7.87330 7.88316 8.10488 8.45617 8.70094 8.77898 9.99844 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.029231 B = 0.002544 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.662401 B =11005.762658 C =11475.332112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 H 0.077 0.923 4 C -0.127 4.127 5 C 0.114 3.886 6 N -1.005 6.005 7 S 2.572 3.428 8 O -0.959 6.959 9 O -0.960 6.960 10 C -0.517 4.517 11 C -0.239 4.239 12 C -0.068 4.068 13 C -0.225 4.225 14 C 0.117 3.883 15 C -0.448 4.448 16 H 0.083 0.917 17 C 0.073 3.927 18 N -0.778 5.778 19 Si 0.914 3.086 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.260 1.260 23 C -0.167 4.167 24 C -0.081 4.081 25 C 0.087 3.913 26 C 0.099 3.901 27 H 0.060 0.940 28 O -0.564 6.564 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.285 0.715 41 H 0.123 0.877 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.073 0.927 45 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.422 12.380 -1.133 17.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.101 4.101 3 H 0.096 0.904 4 C -0.166 4.166 5 C -0.012 4.012 6 N -0.842 5.842 7 S 2.674 3.326 8 O -0.950 6.950 9 O -0.950 6.950 10 C -0.648 4.648 11 C -0.244 4.244 12 C -0.087 4.087 13 C -0.245 4.245 14 C 0.114 3.886 15 C -0.477 4.477 16 H 0.101 0.899 17 C -0.147 4.147 18 N -0.402 5.402 19 Si 0.738 3.262 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.184 1.184 23 C -0.186 4.186 24 C -0.100 4.100 25 C -0.039 4.039 26 C 0.038 3.962 27 H 0.078 0.922 28 O -0.368 6.368 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.097 0.903 41 H 0.141 0.859 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.091 0.909 45 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -13.127 11.754 -1.362 17.673 hybrid contribution 1.242 -0.255 0.628 1.415 sum -11.885 11.499 -0.734 16.553 Atomic orbital electron populations 1.21746 0.94503 1.01844 1.01882 1.21066 0.96388 0.99886 0.92731 0.90414 1.21953 0.95407 1.01695 0.97503 1.21468 0.94547 0.99394 0.85742 1.58081 1.59330 1.56113 1.10678 1.06916 0.76590 0.74785 0.74357 1.93514 1.84590 1.71489 1.45358 1.93517 1.84574 1.71521 1.45376 1.28959 1.17120 1.08972 1.09767 1.18113 1.05316 1.06273 0.94727 1.20461 0.96418 0.96685 0.95162 1.20979 1.01964 1.04305 0.97291 1.17747 0.90121 0.89776 0.90993 1.19753 1.12447 1.13475 1.01993 0.89854 1.26035 0.97693 0.96285 0.94730 1.69825 1.30670 1.29227 1.10513 0.86214 0.81572 0.78729 0.79722 1.19071 1.20097 1.18413 1.21327 0.99787 0.98582 0.98947 1.20601 0.97067 0.97331 0.95048 1.22017 0.95259 1.00100 0.86536 1.22035 0.92151 0.96037 0.85968 0.92156 1.86483 1.75439 1.58849 1.16072 0.92906 0.91823 0.92791 0.90099 0.91069 0.91460 0.88462 0.86209 0.86191 0.88670 0.88282 0.90341 0.85928 0.88745 0.88653 0.90913 0.77240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.03 37.16 0.34 -0.90 16 2 C -0.08 -0.77 2.43 -90.58 -0.22 -0.99 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.13 -1.19 5.36 -26.61 -0.14 -1.33 16 5 C 0.11 1.19 6.43 -3.71 -0.02 1.17 16 6 N -1.01 -12.73 3.23 -113.76 -0.37 -13.09 16 7 S 2.57 44.26 5.44 -107.50 -0.58 43.68 16 8 O -0.96 -19.20 16.59 -57.54 -0.95 -20.15 16 9 O -0.96 -19.49 16.58 -57.54 -0.95 -20.44 16 10 C -0.52 -8.43 6.29 36.01 0.23 -8.21 16 11 C -0.24 -5.15 5.16 -104.33 -0.54 -5.69 16 12 C -0.07 -1.51 9.67 -39.67 -0.38 -1.89 16 13 C -0.23 -5.46 9.80 -38.87 -0.38 -5.84 16 14 C 0.12 3.06 5.57 -106.82 -0.60 2.47 16 15 C -0.45 -11.46 9.05 -37.74 -0.34 -11.80 16 16 H 0.08 2.02 7.91 -52.49 -0.41 1.61 16 17 C 0.07 1.76 5.14 -17.34 -0.09 1.67 16 18 N -0.78 -19.63 10.95 55.55 0.61 -19.02 16 19 Si 0.91 17.91 29.59 -169.99 -5.03 12.88 16 20 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 21 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 23 C -0.17 -4.27 8.70 -38.88 -0.34 -4.61 16 24 C -0.08 -1.88 9.67 -39.66 -0.38 -2.26 16 25 C 0.09 0.96 6.03 -3.93 -0.02 0.93 16 26 C 0.10 1.03 3.05 -26.83 -0.08 0.95 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 O -0.56 -5.38 12.59 -35.23 -0.44 -5.83 16 29 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.06 0.59 7.65 -51.93 -0.40 0.19 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 1.08 6.86 -51.93 -0.36 0.72 16 36 H 0.12 1.66 8.08 -51.92 -0.42 1.24 16 37 H 0.12 1.62 8.08 -51.93 -0.42 1.20 16 38 H 0.10 1.86 8.06 -52.48 -0.42 1.43 16 39 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 40 H 0.29 6.49 8.30 -40.82 -0.34 6.16 16 41 H 0.12 3.20 6.16 -52.48 -0.32 2.87 16 42 H 0.09 1.97 8.06 -52.49 -0.42 1.55 16 43 H 0.10 1.09 6.85 -51.93 -0.36 0.73 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.38 2.31 9.08 45.56 0.41 2.72 16 LS Contribution 375.97 15.07 5.67 5.67 Total: -1.00 -32.16 375.97 -11.10 -43.26 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -6.06 Total: 9.39 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: -2.98 Total: -36.34 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: 0.24 Total: -32.12 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -2.35 Total: -46.42 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Atomic # 16 Polarization: 44.26 SS G_CDS: -0.58 Total: 43.68 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.16 -11.10 -43.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364810934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.539 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds