Wall clock time and date at job start Tue Mar 31 2020 23:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46094 * 2 1 4 4 C 1.53037 * 109.46106 * 240.03156 * 2 1 3 5 5 C 1.53200 * 109.31459 * 178.62517 * 4 2 1 6 6 N 1.46919 * 108.77323 * 54.63322 * 5 4 2 7 7 S 1.65602 * 120.63260 * 126.37145 * 6 5 4 8 8 O 1.42107 * 104.27411 * 333.92712 * 7 6 5 9 9 O 1.42101 * 104.28191 * 206.07256 * 7 6 5 10 10 C 1.81400 * 104.44893 * 89.99472 * 7 6 5 11 11 C 1.50703 * 109.47059 * 180.02562 * 10 7 6 12 12 C 1.38629 * 119.75251 * 90.00191 * 11 10 7 13 13 C 1.37610 * 120.25244 * 179.70514 * 12 11 10 14 14 C 1.40718 * 119.74394 * 0.27583 * 13 12 11 15 15 C 1.41403 * 120.24537 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99744 * 24.37645 * 15 14 13 17 17 C 1.39941 * 120.00009 * 204.37575 * 15 14 13 18 18 N 1.30826 * 119.99936 * 17.84547 * 17 15 14 19 19 Si 1.86794 * 120.00203 * 197.84149 * 17 15 14 20 20 H 1.48500 * 109.47239 * 90.00058 * 19 17 15 21 21 H 1.48496 * 109.47389 * 210.00323 * 19 17 15 22 22 H 1.48500 * 109.46960 * 329.99948 * 19 17 15 23 23 C 1.40715 * 119.50980 * 359.97438 * 14 13 12 24 24 C 1.37611 * 119.74654 * 0.02562 * 23 14 13 25 25 C 1.46931 * 118.74029 * 306.64429 * 6 5 4 26 26 C 1.52762 * 109.00871 * 53.31151 * 25 6 5 27 27 H 1.09004 * 109.38573 * 65.51154 * 26 25 6 28 28 O 1.42894 * 109.56455 * 185.55806 * 26 25 6 29 29 H 1.09007 * 109.46826 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47324 * 299.97034 * 1 2 3 31 31 H 1.08998 * 109.47615 * 59.97456 * 1 2 3 32 32 H 1.09004 * 109.49948 * 58.67138 * 4 2 1 33 33 H 1.08998 * 109.50209 * 298.57609 * 4 2 1 34 34 H 1.09000 * 109.58204 * 294.84323 * 5 4 2 35 35 H 1.08994 * 109.58438 * 174.41982 * 5 4 2 36 36 H 1.09001 * 109.46644 * 60.00741 * 10 7 6 37 37 H 1.08994 * 109.47496 * 300.00329 * 10 7 6 38 38 H 1.08003 * 119.87231 * 359.97438 * 12 11 10 39 39 H 1.07997 * 120.13222 * 180.29734 * 13 12 11 40 40 H 0.96996 * 120.00202 * 180.02562 * 18 17 15 41 41 H 1.08006 * 120.12439 * 180.02562 * 23 14 13 42 42 H 1.08000 * 119.87807 * 180.02562 * 24 23 14 43 43 H 1.08997 * 109.58885 * 173.14743 * 25 6 5 44 44 H 1.09004 * 109.58262 * 293.57070 * 25 6 5 45 45 H 0.96706 * 113.99636 * 299.96141 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5714 -0.6888 -1.2641 6 7 4.0677 -1.2491 0.0002 7 16 5.1654 -2.4890 0.0004 8 8 4.9445 -3.1528 -1.2366 9 8 4.9446 -3.1525 1.2374 10 6 6.7807 -1.6635 0.0001 11 6 7.8746 -2.7001 -0.0004 12 6 8.3736 -3.1730 -1.2042 13 6 9.3767 -4.1151 -1.2166 14 6 9.8917 -4.6026 -0.0012 15 6 10.9228 -5.5702 -0.0016 16 1 11.5820 -5.6565 -0.8528 17 6 11.0891 -6.4160 1.1008 18 7 10.1165 -6.5657 1.9630 19 14 12.6996 -7.3312 1.3414 20 1 13.6246 -6.5004 2.1534 21 1 12.4401 -8.6136 2.0437 22 1 13.3145 -7.6072 0.0182 23 6 9.3739 -4.1192 1.2146 24 6 8.3709 -3.1771 1.2031 25 6 3.5669 -0.6926 1.2644 26 6 2.0396 -0.7208 1.2502 27 1 1.6969 -1.7555 1.2386 28 8 1.5380 -0.0651 2.4165 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5134 0.8902 31 1 -0.3634 0.5142 -0.8897 32 1 1.6573 -0.2207 -2.1399 33 1 1.6977 -1.7556 -1.2384 34 1 3.9144 0.3406 -1.3672 35 1 3.9416 -1.2848 -2.0982 36 1 6.8704 -1.0406 0.8900 37 1 6.8703 -1.0408 -0.8899 38 1 7.9767 -2.7975 -2.1358 39 1 9.7673 -4.4786 -2.1555 40 1 10.2319 -7.1517 2.7273 41 1 9.7622 -4.4862 2.1533 42 1 7.9721 -2.8043 2.1350 43 1 3.9342 -1.2910 2.0981 44 1 3.9096 0.3366 1.3717 45 1 1.8218 -0.4696 3.2478 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364810934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:49 Heat of formation + Delta-G solvation = -139.418802 kcal Electronic energy + Delta-G solvation = -27574.766876 eV Core-core repulsion = 23682.271557 eV Total energy + Delta-G solvation = -3892.495319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.21354 -39.60196 -38.22288 -37.02046 -36.78295 -35.96822 -34.51577 -33.23147 -31.30280 -31.04249 -29.58033 -28.51430 -25.98368 -24.23742 -23.74436 -23.03483 -22.11962 -21.26522 -19.79023 -19.31575 -18.82055 -18.13904 -17.51376 -17.28182 -17.12157 -16.15176 -15.98779 -15.84440 -15.70497 -15.54904 -15.37557 -14.79917 -14.37377 -14.22891 -13.96892 -13.92771 -13.71887 -13.57993 -13.41263 -13.28950 -13.15296 -13.06141 -13.03863 -12.80223 -12.79476 -12.74717 -12.51309 -12.21911 -11.96425 -11.92221 -11.57399 -11.54612 -11.36944 -11.22416 -11.16322 -11.04503 -9.96887 -9.49335 -9.27946 -8.72960 -6.42598 -0.81649 0.85850 1.04628 1.37094 1.49545 1.51520 1.72002 2.17073 2.61403 2.90696 3.10295 3.25086 3.62405 3.64411 3.75399 3.80081 3.92526 3.98741 4.10035 4.28102 4.31843 4.41311 4.45358 4.48891 4.67520 4.67934 4.69688 4.80507 4.87452 4.90353 4.97328 5.02285 5.07044 5.12076 5.21523 5.23531 5.32526 5.41432 5.45145 5.58837 5.59994 5.81534 6.00320 6.02111 6.26193 6.58668 6.81147 6.83030 6.91014 8.23828 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.029231 B = 0.002544 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.662401 B =11005.762658 C =11475.332112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 H 0.089 0.911 4 C -0.125 4.125 5 C 0.104 3.896 6 N -0.996 5.996 7 S 2.590 3.410 8 O -0.991 6.991 9 O -0.997 6.997 10 C -0.519 4.519 11 C -0.234 4.234 12 C -0.076 4.076 13 C -0.245 4.245 14 C 0.084 3.916 15 C -0.488 4.488 16 H 0.084 0.916 17 C 0.032 3.968 18 N -0.818 5.818 19 Si 0.989 3.011 20 H -0.259 1.259 21 H -0.268 1.268 22 H -0.256 1.256 23 C -0.195 4.195 24 C -0.092 4.092 25 C 0.083 3.917 26 C 0.099 3.901 27 H 0.041 0.959 28 O -0.568 6.568 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.052 0.948 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.151 0.849 37 H 0.158 0.842 38 H 0.127 0.873 39 H 0.106 0.894 40 H 0.292 0.708 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.404 14.889 -1.752 20.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.100 4.100 3 H 0.108 0.892 4 C -0.164 4.164 5 C -0.020 4.020 6 N -0.835 5.835 7 S 2.691 3.309 8 O -0.982 6.982 9 O -0.988 6.988 10 C -0.650 4.650 11 C -0.239 4.239 12 C -0.096 4.096 13 C -0.265 4.265 14 C 0.081 3.919 15 C -0.517 4.517 16 H 0.102 0.898 17 C -0.184 4.184 18 N -0.443 5.443 19 Si 0.809 3.191 20 H -0.184 1.184 21 H -0.193 1.193 22 H -0.179 1.179 23 C -0.214 4.214 24 C -0.112 4.112 25 C -0.043 4.043 26 C 0.038 3.962 27 H 0.059 0.941 28 O -0.375 6.375 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.126 0.874 33 H 0.071 0.929 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.169 0.831 37 H 0.176 0.824 38 H 0.144 0.856 39 H 0.125 0.875 40 H 0.103 0.897 41 H 0.125 0.875 42 H 0.132 0.868 43 H 0.105 0.895 44 H 0.118 0.882 45 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -14.085 14.246 -1.980 20.131 hybrid contribution 1.279 -0.819 0.799 1.716 sum -12.807 13.427 -1.181 18.593 Atomic orbital electron populations 1.21715 0.94107 1.01528 1.02343 1.21099 0.96744 1.00193 0.91984 0.89249 1.21979 0.94691 1.01058 0.98720 1.21807 0.95228 1.00903 0.84107 1.57633 1.58131 1.55321 1.12436 1.05787 0.77171 0.75065 0.72869 1.93479 1.85272 1.72965 1.46448 1.93477 1.85322 1.73169 1.46800 1.29017 1.14402 1.08254 1.13322 1.18550 1.05575 1.06075 0.93656 1.20876 0.95688 0.96055 0.96943 1.21235 1.02899 1.05274 0.97088 1.18109 0.91120 0.90743 0.91906 1.19987 1.13525 1.14877 1.03281 0.89840 1.26917 1.00972 0.96699 0.93859 1.69882 1.32650 1.30455 1.11345 0.85098 0.76806 0.77457 0.79747 1.18380 1.19254 1.17908 1.21343 1.01488 1.00211 0.98387 1.20929 0.96510 0.96837 0.96876 1.22226 0.95616 1.01172 0.85285 1.21984 0.91772 0.95429 0.86991 0.94052 1.86464 1.75484 1.58933 1.16637 0.93641 0.92487 0.91193 0.87433 0.92876 0.87992 0.89175 0.83101 0.82448 0.85554 0.87548 0.89713 0.87520 0.86848 0.89460 0.88209 0.75655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.03 71.98 0.65 -1.43 16 2 C -0.08 -1.29 2.43 -10.77 -0.03 -1.32 16 3 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 4 C -0.13 -1.98 5.36 30.67 0.16 -1.81 16 5 C 0.10 1.80 6.43 86.37 0.56 2.36 16 6 N -1.00 -22.40 3.23 -513.84 -1.66 -24.06 16 7 S 2.59 84.59 5.44 -56.49 -0.31 84.28 16 8 O -0.99 -38.55 16.59 -127.65 -2.12 -40.67 16 9 O -1.00 -40.02 16.58 -127.65 -2.12 -42.14 16 10 C -0.52 -15.22 6.29 71.24 0.45 -14.77 16 11 C -0.23 -9.80 5.16 -19.67 -0.10 -9.90 16 12 C -0.08 -3.34 9.67 22.21 0.21 -3.13 16 13 C -0.25 -12.15 9.80 22.73 0.22 -11.93 16 14 C 0.08 4.60 5.57 -21.29 -0.12 4.48 16 15 C -0.49 -26.17 9.05 23.46 0.21 -25.95 16 16 H 0.08 4.26 7.91 -2.91 -0.02 4.24 16 17 C 0.03 1.59 5.14 85.26 0.44 2.03 16 18 N -0.82 -43.13 10.95 21.83 0.24 -42.89 16 19 Si 0.99 37.62 29.59 68.60 2.03 39.65 16 20 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 21 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 22 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 23 C -0.19 -10.40 8.70 22.73 0.20 -10.20 16 24 C -0.09 -4.31 9.67 22.22 0.21 -4.09 16 25 C 0.08 1.58 6.03 86.22 0.52 2.10 16 26 C 0.10 1.86 3.05 30.53 0.09 1.96 16 27 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 28 O -0.57 -9.62 12.59 -148.98 -1.88 -11.49 16 29 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.06 0.93 7.65 -2.39 -0.02 0.91 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.09 1.74 6.86 -2.39 -0.02 1.72 16 36 H 0.15 3.54 8.08 -2.39 -0.02 3.52 16 37 H 0.16 3.49 8.08 -2.39 -0.02 3.47 16 38 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 39 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 40 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 41 H 0.11 5.91 6.16 -2.91 -0.02 5.89 16 42 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 43 H 0.09 1.83 6.85 -2.39 -0.02 1.82 16 44 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.39 4.07 9.08 -74.05 -0.67 3.40 16 Total: -1.00 -73.16 375.97 -1.80 -74.95 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: 0.32 Total: 33.99 kcal Atomic # 6 Polarization: -75.30 SS G_CDS: 3.69 Total: -71.62 kcal Atomic # 7 Polarization: -65.54 SS G_CDS: -1.42 Total: -66.95 kcal Atomic # 8 Polarization: -88.19 SS G_CDS: -6.11 Total: -94.30 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.03 Total: 39.65 kcal Atomic # 16 Polarization: 84.59 SS G_CDS: -0.31 Total: 84.28 kcal Total: -73.16 -1.80 -74.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364810934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.464 kcal (2) G-P(sol) polarization free energy of solvation -73.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds