Wall clock time and date at job start Tue Mar 31 2020 23:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.45922 * 2 1 4 4 C 1.53032 * 109.46693 * 119.96306 * 2 1 3 5 5 C 1.52759 * 109.39016 * 181.25982 * 4 2 1 6 6 N 1.46921 * 109.00561 * 305.59178 * 5 4 2 7 7 S 1.65603 * 120.62746 * 233.57943 * 6 5 4 8 8 O 1.42098 * 104.27546 * 153.65050 * 7 6 5 9 9 O 1.42100 * 104.27628 * 25.79106 * 7 6 5 10 10 C 1.81405 * 104.44917 * 269.72126 * 7 6 5 11 11 C 1.50702 * 109.46949 * 180.02562 * 10 7 6 12 12 C 1.38630 * 119.75110 * 89.99790 * 11 10 7 13 13 C 1.37623 * 120.24533 * 179.69629 * 12 11 10 14 14 C 1.40709 * 119.74494 * 0.28244 * 13 12 11 15 15 C 1.41405 * 120.24386 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99621 * 24.38147 * 15 14 13 17 17 C 1.39941 * 120.00211 * 204.38100 * 15 14 13 18 18 N 1.30826 * 119.99936 * 17.86458 * 17 15 14 19 19 Si 1.86794 * 120.00203 * 197.86060 * 17 15 14 20 20 H 1.48503 * 109.47222 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47117 * 120.00023 * 19 17 15 22 22 H 1.48499 * 109.47235 * 240.00189 * 19 17 15 23 23 C 1.40715 * 119.51621 * 359.97438 * 14 13 12 24 24 C 1.37620 * 119.74330 * 359.97438 * 23 14 13 25 25 C 1.46929 * 118.74436 * 53.30603 * 6 5 4 26 26 C 1.53041 * 109.45910 * 240.03682 * 2 1 3 27 27 H 1.08995 * 109.52941 * 58.63946 * 26 2 1 28 28 O 1.42908 * 109.49486 * 298.55979 * 26 2 1 29 29 H 1.08999 * 109.46530 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46760 * 299.96279 * 1 2 3 31 31 H 1.08991 * 109.46984 * 59.96970 * 1 2 3 32 32 H 1.09009 * 109.49906 * 301.34435 * 4 2 1 33 33 H 1.09007 * 109.49548 * 61.39797 * 4 2 1 34 34 H 1.08997 * 109.51144 * 185.70223 * 5 4 2 35 35 H 1.09008 * 109.42779 * 65.42483 * 5 4 2 36 36 H 1.08996 * 109.47316 * 59.99642 * 10 7 6 37 37 H 1.08998 * 109.47049 * 300.00125 * 10 7 6 38 38 H 1.07994 * 119.87525 * 359.97438 * 12 11 10 39 39 H 1.08000 * 120.12295 * 180.25418 * 13 12 11 40 40 H 0.96996 * 120.00202 * 180.02562 * 18 17 15 41 41 H 1.07996 * 120.13306 * 179.97438 * 23 14 13 42 42 H 1.07993 * 119.87628 * 180.02562 * 24 23 14 43 43 H 1.09002 * 109.58198 * 66.42832 * 25 6 5 44 44 H 1.08997 * 109.59129 * 186.85272 * 25 6 5 45 45 H 0.96695 * 113.99820 * 180.16599 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7206 1.2500 5 6 3.5673 -0.6922 1.2641 6 7 4.0679 -1.2487 -0.0001 7 16 5.1659 -2.4884 -0.0001 8 8 4.9449 -3.1522 -1.2369 9 8 4.9454 -3.1518 1.2371 10 6 6.7811 -1.6626 -0.0005 11 6 7.8751 -2.6990 -0.0012 12 6 8.3740 -3.1718 -1.2050 13 6 9.3774 -4.1137 -1.2175 14 6 9.8927 -4.6009 -0.0022 15 6 10.9240 -5.5683 -0.0027 16 1 11.5832 -5.6544 -0.8539 17 6 11.0907 -6.4141 1.0997 18 7 10.1181 -6.5645 1.9617 19 14 12.7016 -7.3284 1.3404 20 1 13.6331 -6.9898 0.2345 21 1 13.3070 -6.9317 2.6370 22 1 12.4454 -8.7912 1.3406 23 6 9.3749 -4.1177 1.2137 24 6 8.3723 -3.1751 1.2023 25 6 3.5714 -0.6885 -1.2644 26 6 2.0399 -0.7207 -1.2501 27 1 1.6572 -0.2213 -2.1402 28 8 1.5915 -2.0775 -1.2346 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5133 0.8903 31 1 -0.3633 0.5143 -0.8896 32 1 1.6573 -0.2206 2.1398 33 1 1.6975 -1.7554 1.2386 34 1 3.9348 -1.2905 2.0978 35 1 3.9098 0.3371 1.3714 36 1 6.8708 -1.0395 0.8893 37 1 6.8705 -1.0398 -0.8906 38 1 7.9769 -2.7964 -2.1365 39 1 9.7675 -4.4777 -2.1565 40 1 10.2336 -7.1504 2.7260 41 1 9.7627 -4.4851 2.1523 42 1 7.9736 -2.8025 2.1342 43 1 3.9143 0.3410 -1.3675 44 1 3.9417 -1.2844 -2.0986 45 1 1.8805 -2.5960 -1.9980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364810935.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:54 Heat of formation + Delta-G solvation = -114.874289 kcal Electronic energy + Delta-G solvation = -27803.216660 eV Core-core repulsion = 23911.785671 eV Total energy + Delta-G solvation = -3891.430989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.41736 -37.78125 -36.67119 -35.52923 -35.33879 -34.16632 -33.65651 -31.49923 -30.41195 -29.44397 -27.93015 -27.56791 -24.22602 -23.44305 -22.88534 -21.16993 -20.39535 -20.13631 -18.73075 -17.60463 -17.44073 -16.78565 -16.02778 -15.77683 -15.45002 -15.12246 -14.87276 -14.52476 -14.37940 -13.98565 -13.90946 -13.74232 -13.69654 -13.10177 -12.69215 -12.49162 -12.25239 -12.16272 -12.08063 -11.89357 -11.87472 -11.59960 -11.54305 -11.36897 -11.35293 -11.14848 -11.04192 -11.01122 -10.81436 -10.60113 -10.49598 -10.30306 -10.10533 -9.79551 -9.53813 -9.26192 -8.84642 -7.61819 -7.44496 -6.91362 -4.49279 0.61557 2.62521 2.95125 3.00362 3.01021 3.05793 3.09496 3.82671 4.13180 4.30290 4.44011 4.47254 4.50146 4.58437 4.73295 4.89377 5.02107 5.22374 5.27165 5.31568 5.34371 5.45042 5.46478 5.47855 5.54011 5.61571 5.68647 5.74254 5.89150 6.05168 6.07553 6.15982 6.18805 6.25377 6.33534 6.64343 6.83017 6.92241 7.09622 7.18530 7.45730 7.61015 7.66323 7.89743 7.90527 8.12673 8.47942 8.72415 8.80196 10.02103 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.031712 B = 0.002574 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.739254 B =10875.751288 C =11101.615634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.082 4.082 3 H 0.079 0.921 4 C -0.124 4.124 5 C 0.117 3.883 6 N -1.000 6.000 7 S 2.578 3.422 8 O -0.962 6.962 9 O -0.957 6.957 10 C -0.522 4.522 11 C -0.238 4.238 12 C -0.068 4.068 13 C -0.226 4.226 14 C 0.117 3.883 15 C -0.448 4.448 16 H 0.083 0.917 17 C 0.073 3.927 18 N -0.778 5.778 19 Si 0.912 3.088 20 H -0.259 1.259 21 H -0.270 1.270 22 H -0.272 1.272 23 C -0.167 4.167 24 C -0.081 4.081 25 C 0.085 3.915 26 C 0.099 3.901 27 H 0.061 0.939 28 O -0.557 6.557 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.285 0.715 41 H 0.123 0.877 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.096 0.904 45 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.698 13.767 -2.686 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.101 4.101 3 H 0.098 0.902 4 C -0.163 4.163 5 C -0.008 4.008 6 N -0.836 5.836 7 S 2.679 3.321 8 O -0.953 6.953 9 O -0.947 6.947 10 C -0.652 4.652 11 C -0.243 4.243 12 C -0.088 4.088 13 C -0.246 4.246 14 C 0.113 3.887 15 C -0.477 4.477 16 H 0.101 0.899 17 C -0.147 4.147 18 N -0.402 5.402 19 Si 0.736 3.264 20 H -0.182 1.182 21 H -0.195 1.195 22 H -0.198 1.198 23 C -0.186 4.186 24 C -0.101 4.101 25 C -0.042 4.042 26 C 0.039 3.961 27 H 0.079 0.921 28 O -0.363 6.363 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.141 0.859 42 H 0.113 0.887 43 H 0.090 0.910 44 H 0.114 0.886 45 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -13.372 12.949 -1.904 18.711 hybrid contribution 1.237 0.033 -0.382 1.295 sum -12.135 12.981 -2.286 17.916 Atomic orbital electron populations 1.21757 0.94629 1.02570 1.01083 1.21108 0.96278 0.98424 0.94262 0.90236 1.21771 0.95118 1.02412 0.96981 1.21322 0.94837 0.98879 0.85773 1.57954 1.58876 1.56147 1.10628 1.06674 0.76323 0.74754 0.74343 1.93485 1.84628 1.71594 1.45572 1.93522 1.84464 1.71444 1.45320 1.29015 1.17583 1.09038 1.09610 1.18116 1.05256 1.06217 0.94708 1.20450 0.96457 0.96763 0.95123 1.20974 1.01974 1.04331 0.97282 1.17743 0.90128 0.89809 0.90982 1.19764 1.12450 1.13516 1.01988 0.89867 1.26033 0.97679 0.96285 0.94738 1.69834 1.30683 1.29171 1.10559 0.86189 0.81641 0.79078 0.79473 1.18225 1.19510 1.19772 1.21328 0.99795 0.98553 0.98950 1.20610 0.97048 0.97348 0.95076 1.22138 0.95560 0.99785 0.86687 1.22096 0.92308 0.83944 0.97785 0.92096 1.86485 1.77333 1.22304 1.50193 0.91749 0.92852 0.93046 0.91114 0.90330 0.88766 0.91937 0.86259 0.86402 0.88749 0.88315 0.90405 0.85927 0.88726 0.91003 0.88618 0.77199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.06 37.16 0.34 -0.85 16 2 C -0.08 -0.74 2.51 -90.58 -0.23 -0.97 16 3 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 4 C -0.12 -1.30 5.20 -26.84 -0.14 -1.44 16 5 C 0.12 1.33 6.40 -3.94 -0.03 1.30 16 6 N -1.00 -13.01 3.17 -113.77 -0.36 -13.37 16 7 S 2.58 45.55 5.44 -107.50 -0.58 44.97 16 8 O -0.96 -19.27 16.59 -57.54 -0.95 -20.22 16 9 O -0.96 -20.36 16.58 -57.54 -0.95 -21.32 16 10 C -0.52 -8.69 6.29 36.01 0.23 -8.46 16 11 C -0.24 -5.20 5.16 -104.33 -0.54 -5.74 16 12 C -0.07 -1.54 9.67 -39.66 -0.38 -1.92 16 13 C -0.23 -5.52 9.80 -38.87 -0.38 -5.90 16 14 C 0.12 3.08 5.57 -106.82 -0.60 2.49 16 15 C -0.45 -11.57 9.05 -37.74 -0.34 -11.91 16 16 H 0.08 2.04 7.91 -52.49 -0.42 1.63 16 17 C 0.07 1.78 5.14 -17.34 -0.09 1.69 16 18 N -0.78 -19.83 10.96 55.55 0.61 -19.22 16 19 Si 0.91 18.05 29.59 -169.99 -5.03 13.02 16 20 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 21 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 23 C -0.17 -4.32 8.70 -38.87 -0.34 -4.66 16 24 C -0.08 -1.92 9.67 -39.66 -0.38 -2.30 16 25 C 0.08 0.88 6.08 -3.71 -0.02 0.85 16 26 C 0.10 0.96 3.23 -26.61 -0.09 0.87 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 O -0.56 -6.63 11.90 -35.23 -0.42 -7.05 16 29 H 0.06 0.64 7.72 -51.93 -0.40 0.24 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.08 1.03 7.61 -51.92 -0.40 0.63 16 34 H 0.09 1.18 6.85 -51.93 -0.36 0.82 16 35 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 36 H 0.12 1.70 8.08 -51.93 -0.42 1.28 16 37 H 0.12 1.62 8.08 -51.92 -0.42 1.20 16 38 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 39 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 41 H 0.12 3.23 6.16 -52.49 -0.32 2.91 16 42 H 0.09 2.02 8.06 -52.49 -0.42 1.60 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.10 1.03 6.86 -51.93 -0.36 0.67 16 45 H 0.38 3.69 9.08 45.56 0.41 4.10 16 LS Contribution 374.90 15.07 5.65 5.65 Total: -1.00 -32.77 374.90 -11.07 -43.84 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -6.03 Total: 10.66 kcal Atomic # 6 Polarization: -33.97 SS G_CDS: -2.99 Total: -36.96 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: 0.25 Total: -32.59 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -2.33 Total: -48.59 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Atomic # 16 Polarization: 45.55 SS G_CDS: -0.58 Total: 44.97 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.77 -11.07 -43.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364810935.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.034 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds