Wall clock time and date at job start Tue Mar 31 2020 23:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.45922 * 2 1 4 4 C 1.53032 * 109.46693 * 119.96306 * 2 1 3 5 5 C 1.52759 * 109.39016 * 181.25982 * 4 2 1 6 6 N 1.46921 * 109.00561 * 305.59178 * 5 4 2 7 7 S 1.65603 * 120.62746 * 233.57943 * 6 5 4 8 8 O 1.42098 * 104.27546 * 153.65050 * 7 6 5 9 9 O 1.42100 * 104.27628 * 25.79106 * 7 6 5 10 10 C 1.81405 * 104.44917 * 269.72126 * 7 6 5 11 11 C 1.50702 * 109.46949 * 180.02562 * 10 7 6 12 12 C 1.38630 * 119.75110 * 89.99790 * 11 10 7 13 13 C 1.37623 * 120.24533 * 179.69629 * 12 11 10 14 14 C 1.40709 * 119.74494 * 0.28244 * 13 12 11 15 15 C 1.41405 * 120.24386 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99621 * 24.38147 * 15 14 13 17 17 C 1.39941 * 120.00211 * 204.38100 * 15 14 13 18 18 N 1.30826 * 119.99936 * 17.86458 * 17 15 14 19 19 Si 1.86794 * 120.00203 * 197.86060 * 17 15 14 20 20 H 1.48503 * 109.47222 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47117 * 120.00023 * 19 17 15 22 22 H 1.48499 * 109.47235 * 240.00189 * 19 17 15 23 23 C 1.40715 * 119.51621 * 359.97438 * 14 13 12 24 24 C 1.37620 * 119.74330 * 359.97438 * 23 14 13 25 25 C 1.46929 * 118.74436 * 53.30603 * 6 5 4 26 26 C 1.53041 * 109.45910 * 240.03682 * 2 1 3 27 27 H 1.08995 * 109.52941 * 58.63946 * 26 2 1 28 28 O 1.42908 * 109.49486 * 298.55979 * 26 2 1 29 29 H 1.08999 * 109.46530 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46760 * 299.96279 * 1 2 3 31 31 H 1.08991 * 109.46984 * 59.96970 * 1 2 3 32 32 H 1.09009 * 109.49906 * 301.34435 * 4 2 1 33 33 H 1.09007 * 109.49548 * 61.39797 * 4 2 1 34 34 H 1.08997 * 109.51144 * 185.70223 * 5 4 2 35 35 H 1.09008 * 109.42779 * 65.42483 * 5 4 2 36 36 H 1.08996 * 109.47316 * 59.99642 * 10 7 6 37 37 H 1.08998 * 109.47049 * 300.00125 * 10 7 6 38 38 H 1.07994 * 119.87525 * 359.97438 * 12 11 10 39 39 H 1.08000 * 120.12295 * 180.25418 * 13 12 11 40 40 H 0.96996 * 120.00202 * 180.02562 * 18 17 15 41 41 H 1.07996 * 120.13306 * 179.97438 * 23 14 13 42 42 H 1.07993 * 119.87628 * 180.02562 * 24 23 14 43 43 H 1.09002 * 109.58198 * 66.42832 * 25 6 5 44 44 H 1.08997 * 109.59129 * 186.85272 * 25 6 5 45 45 H 0.96695 * 113.99820 * 180.16599 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7206 1.2500 5 6 3.5673 -0.6922 1.2641 6 7 4.0679 -1.2487 -0.0001 7 16 5.1659 -2.4884 -0.0001 8 8 4.9449 -3.1522 -1.2369 9 8 4.9454 -3.1518 1.2371 10 6 6.7811 -1.6626 -0.0005 11 6 7.8751 -2.6990 -0.0012 12 6 8.3740 -3.1718 -1.2050 13 6 9.3774 -4.1137 -1.2175 14 6 9.8927 -4.6009 -0.0022 15 6 10.9240 -5.5683 -0.0027 16 1 11.5832 -5.6544 -0.8539 17 6 11.0907 -6.4141 1.0997 18 7 10.1181 -6.5645 1.9617 19 14 12.7016 -7.3284 1.3404 20 1 13.6331 -6.9898 0.2345 21 1 13.3070 -6.9317 2.6370 22 1 12.4454 -8.7912 1.3406 23 6 9.3749 -4.1177 1.2137 24 6 8.3723 -3.1751 1.2023 25 6 3.5714 -0.6885 -1.2644 26 6 2.0399 -0.7207 -1.2501 27 1 1.6572 -0.2213 -2.1402 28 8 1.5915 -2.0775 -1.2346 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5133 0.8903 31 1 -0.3633 0.5143 -0.8896 32 1 1.6573 -0.2206 2.1398 33 1 1.6975 -1.7554 1.2386 34 1 3.9348 -1.2905 2.0978 35 1 3.9098 0.3371 1.3714 36 1 6.8708 -1.0395 0.8893 37 1 6.8705 -1.0398 -0.8906 38 1 7.9769 -2.7964 -2.1365 39 1 9.7675 -4.4777 -2.1565 40 1 10.2336 -7.1504 2.7260 41 1 9.7627 -4.4851 2.1523 42 1 7.9736 -2.8025 2.1342 43 1 3.9143 0.3410 -1.3675 44 1 3.9417 -1.2844 -2.0986 45 1 1.8805 -2.5960 -1.9980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364810935.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:53 Heat of formation + Delta-G solvation = -138.320344 kcal Electronic energy + Delta-G solvation = -27804.233357 eV Core-core repulsion = 23911.785671 eV Total energy + Delta-G solvation = -3892.447686 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.21568 -39.60154 -38.17117 -36.91468 -36.36433 -35.96690 -34.46158 -33.22741 -31.30568 -31.22208 -29.57180 -28.44554 -25.98129 -24.24548 -23.71714 -23.03661 -22.12212 -21.03000 -19.85815 -19.31922 -18.85655 -17.78132 -17.39228 -17.21410 -16.91327 -16.12506 -15.98004 -15.81385 -15.69641 -15.59812 -15.25450 -14.74899 -14.54005 -14.37394 -13.98050 -13.93100 -13.72165 -13.57132 -13.30226 -13.22670 -13.10343 -13.05741 -12.95635 -12.77706 -12.75763 -12.61029 -12.39580 -12.20810 -11.94399 -11.81641 -11.59471 -11.52728 -11.37873 -11.25581 -11.04907 -10.90587 -9.83417 -9.49431 -9.26621 -8.72922 -6.42515 -0.76506 0.85801 1.04160 1.37038 1.47716 1.53682 1.81352 2.17152 2.61767 2.98169 3.18373 3.44684 3.58467 3.63589 3.83329 3.84030 3.98159 4.01540 4.16701 4.28177 4.41041 4.48436 4.50776 4.59717 4.68414 4.73573 4.74088 4.77757 4.87565 4.95431 4.97029 5.04501 5.07049 5.18235 5.23281 5.30042 5.32451 5.39864 5.58956 5.59386 5.72071 5.81324 6.00276 6.02088 6.25909 6.58626 6.83005 6.87806 6.90977 8.24090 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.031712 B = 0.002574 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.739254 B =10875.751288 C =11101.615634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 H 0.109 0.891 4 C -0.124 4.124 5 C 0.109 3.891 6 N -0.992 5.992 7 S 2.592 3.408 8 O -0.992 6.992 9 O -1.003 7.003 10 C -0.522 4.522 11 C -0.234 4.234 12 C -0.076 4.076 13 C -0.245 4.245 14 C 0.084 3.916 15 C -0.487 4.487 16 H 0.084 0.916 17 C 0.031 3.969 18 N -0.819 5.819 19 Si 0.989 3.011 20 H -0.254 1.254 21 H -0.262 1.262 22 H -0.266 1.266 23 C -0.195 4.195 24 C -0.094 4.094 25 C 0.075 3.925 26 C 0.092 3.908 27 H 0.089 0.911 28 O -0.583 6.583 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.150 0.850 37 H 0.157 0.843 38 H 0.127 0.873 39 H 0.107 0.893 40 H 0.292 0.708 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.090 0.910 45 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.561 16.867 -3.446 21.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 H 0.128 0.872 4 C -0.163 4.163 5 C -0.016 4.016 6 N -0.830 5.830 7 S 2.693 3.307 8 O -0.982 6.982 9 O -0.993 6.993 10 C -0.653 4.653 11 C -0.238 4.238 12 C -0.096 4.096 13 C -0.265 4.265 14 C 0.081 3.919 15 C -0.516 4.516 16 H 0.102 0.898 17 C -0.185 4.185 18 N -0.444 5.444 19 Si 0.809 3.191 20 H -0.177 1.177 21 H -0.187 1.187 22 H -0.191 1.191 23 C -0.214 4.214 24 C -0.113 4.113 25 C -0.050 4.050 26 C 0.031 3.969 27 H 0.107 0.893 28 O -0.390 6.390 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.121 0.879 36 H 0.168 0.832 37 H 0.175 0.825 38 H 0.145 0.855 39 H 0.125 0.875 40 H 0.103 0.897 41 H 0.124 0.876 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.108 0.892 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -14.217 16.036 -2.677 21.597 hybrid contribution 1.241 -0.725 -0.191 1.450 sum -12.976 15.311 -2.868 20.274 Atomic orbital electron populations 1.21719 0.94385 1.01328 1.02298 1.21210 0.96510 0.99496 0.92854 0.87247 1.21774 0.94631 1.00823 0.99093 1.21593 0.95303 1.00455 0.84202 1.57509 1.57639 1.55310 1.12572 1.05647 0.77052 0.75176 0.72794 1.93449 1.85279 1.73070 1.46417 1.93474 1.85344 1.73365 1.47096 1.29057 1.14724 1.08292 1.13190 1.18560 1.05519 1.06074 0.93645 1.20869 0.95699 0.96099 0.96891 1.21238 1.02887 1.05264 0.97091 1.18107 0.91135 0.90786 0.91882 1.20002 1.13486 1.14864 1.03280 0.89803 1.26934 1.01017 0.96710 0.93851 1.69892 1.32720 1.30399 1.11407 0.85056 0.76812 0.77663 0.79569 1.17730 1.18658 1.19057 1.21342 1.01495 1.00174 0.98417 1.20932 0.96553 0.96930 0.96881 1.22508 0.96032 1.01580 0.84841 1.22382 0.91927 0.83134 0.99412 0.89307 1.86479 1.77808 1.23865 1.50838 0.94212 0.91769 0.91723 0.89019 0.94018 0.90669 0.87851 0.83228 0.82484 0.85525 0.87485 0.89731 0.87551 0.87010 0.86989 0.89211 0.76653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.06 71.98 0.65 -1.30 16 2 C -0.08 -1.18 2.51 -10.77 -0.03 -1.21 16 3 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 4 C -0.12 -2.33 5.20 30.52 0.16 -2.17 16 5 C 0.11 2.15 6.40 86.22 0.55 2.70 16 6 N -0.99 -22.93 3.17 -513.85 -1.63 -24.56 16 7 S 2.59 87.80 5.44 -56.49 -0.31 87.49 16 8 O -0.99 -38.83 16.59 -127.65 -2.12 -40.95 16 9 O -1.00 -42.88 16.58 -127.65 -2.12 -45.00 16 10 C -0.52 -15.70 6.29 71.24 0.45 -15.25 16 11 C -0.23 -9.97 5.16 -19.67 -0.10 -10.07 16 12 C -0.08 -3.38 9.67 22.22 0.21 -3.16 16 13 C -0.25 -12.25 9.80 22.73 0.22 -12.03 16 14 C 0.08 4.63 5.57 -21.29 -0.12 4.51 16 15 C -0.49 -26.37 9.05 23.46 0.21 -26.15 16 16 H 0.08 4.31 7.91 -2.91 -0.02 4.29 16 17 C 0.03 1.57 5.14 85.26 0.44 2.00 16 18 N -0.82 -43.68 10.96 21.83 0.24 -43.44 16 19 Si 0.99 37.95 29.59 68.60 2.03 39.98 16 20 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 21 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 22 H -0.27 -9.81 7.11 99.48 0.71 -9.11 16 23 C -0.19 -10.56 8.70 22.73 0.20 -10.36 16 24 C -0.09 -4.47 9.67 22.22 0.21 -4.26 16 25 C 0.08 1.27 6.08 86.36 0.52 1.79 16 26 C 0.09 1.48 3.23 30.67 0.10 1.57 16 27 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 28 O -0.58 -13.33 11.90 -148.98 -1.77 -15.10 16 29 H 0.04 0.74 7.72 -2.39 -0.02 0.73 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.04 1.08 7.61 -2.38 -0.02 1.07 16 34 H 0.07 1.78 6.85 -2.39 -0.02 1.77 16 35 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.15 3.65 8.08 -2.39 -0.02 3.63 16 37 H 0.16 3.54 8.08 -2.39 -0.02 3.52 16 38 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 39 H 0.11 4.97 8.06 -2.91 -0.02 4.94 16 40 H 0.29 13.95 8.30 -92.71 -0.77 13.19 16 41 H 0.11 5.98 6.16 -2.91 -0.02 5.96 16 42 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 43 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.09 1.65 6.86 -2.39 -0.02 1.63 16 45 H 0.39 7.34 9.08 -74.06 -0.67 6.67 16 Total: -1.00 -76.33 374.90 -1.66 -77.99 By element: Atomic # 1 Polarization: 36.63 SS G_CDS: 0.32 Total: 36.95 kcal Atomic # 6 Polarization: -77.06 SS G_CDS: 3.69 Total: -73.37 kcal Atomic # 7 Polarization: -66.61 SS G_CDS: -1.39 Total: -68.00 kcal Atomic # 8 Polarization: -95.04 SS G_CDS: -6.01 Total: -101.04 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Atomic # 16 Polarization: 87.80 SS G_CDS: -0.31 Total: 87.49 kcal Total: -76.33 -1.66 -77.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364810935.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.331 kcal (2) G-P(sol) polarization free energy of solvation -76.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds