Wall clock time and date at job start Tue Mar 31 2020 23:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.45645 * 2 1 4 4 C 1.53041 * 109.45912 * 119.97393 * 2 1 3 5 5 C 1.53191 * 109.31024 * 181.37267 * 4 2 1 6 6 N 1.46928 * 108.77686 * 305.36505 * 5 4 2 7 7 S 1.65596 * 120.63264 * 233.59065 * 6 5 4 8 8 O 1.42097 * 104.27603 * 333.92535 * 7 6 5 9 9 O 1.42099 * 104.27844 * 206.06869 * 7 6 5 10 10 C 1.81403 * 104.45282 * 89.99628 * 7 6 5 11 11 C 1.50693 * 109.47006 * 180.02562 * 10 7 6 12 12 C 1.38637 * 119.75507 * 90.00373 * 11 10 7 13 13 C 1.37618 * 120.25327 * 179.97438 * 12 11 10 14 14 C 1.40717 * 119.74333 * 359.97438 * 13 12 11 15 15 C 1.41393 * 120.24250 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99712 * 335.59724 * 15 14 13 17 17 C 1.39938 * 119.99935 * 155.86931 * 15 14 13 18 18 N 1.30832 * 120.00045 * 342.02958 * 17 15 14 19 19 Si 1.86794 * 120.00168 * 162.02874 * 17 15 14 20 20 H 1.48500 * 109.47274 * 90.00264 * 19 17 15 21 21 H 1.48502 * 109.47283 * 209.99821 * 19 17 15 22 22 H 1.48497 * 109.47359 * 330.00062 * 19 17 15 23 23 C 1.40713 * 119.50884 * 0.27597 * 14 13 12 24 24 C 1.37616 * 119.74701 * 359.46901 * 23 14 13 25 25 C 1.46928 * 118.73661 * 53.85942 * 6 5 4 26 26 C 1.53034 * 109.44724 * 240.03771 * 2 1 3 27 27 H 1.09000 * 109.49983 * 298.56910 * 26 2 1 28 28 O 1.42900 * 109.50134 * 58.66689 * 26 2 1 29 29 H 1.09004 * 109.47092 * 300.02648 * 1 2 3 30 30 H 1.09000 * 109.46839 * 60.02444 * 1 2 3 31 31 H 1.08993 * 109.47069 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.49479 * 61.41875 * 4 2 1 33 33 H 1.08995 * 109.49565 * 301.32048 * 4 2 1 34 34 H 1.08996 * 109.58497 * 185.57570 * 5 4 2 35 35 H 1.09003 * 109.58723 * 65.15055 * 5 4 2 36 36 H 1.08992 * 109.46861 * 59.99963 * 10 7 6 37 37 H 1.09005 * 109.46963 * 300.00379 * 10 7 6 38 38 H 1.08008 * 119.86770 * 359.97028 * 12 11 10 39 39 H 1.08001 * 120.12331 * 179.97438 * 13 12 11 40 40 H 0.96997 * 119.99694 * 180.02562 * 18 17 15 41 41 H 1.08008 * 120.12228 * 179.69698 * 23 14 13 42 42 H 1.08006 * 119.87639 * 180.27563 * 24 23 14 43 43 H 1.08996 * 109.58711 * 65.93158 * 25 6 5 44 44 H 1.09001 * 109.58261 * 186.35367 * 25 6 5 45 45 H 0.96707 * 114.00161 * 179.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 3.5714 -0.6890 1.2640 6 7 4.0677 -1.2493 -0.0004 7 16 5.1661 -2.4885 -0.0006 8 8 5.8518 -2.3492 1.2361 9 8 5.8511 -2.3494 -1.2378 10 6 4.1519 -3.9925 -0.0003 11 6 5.0490 -5.2033 0.0002 12 6 5.4584 -5.7558 1.2040 13 6 6.2773 -6.8618 1.2163 14 6 6.6985 -7.4322 0.0009 15 6 7.5402 -8.5683 0.0013 16 1 8.1727 -8.7714 0.8528 17 6 7.5580 -9.4263 -1.1041 18 7 6.5771 -9.3988 -1.9694 19 14 8.9822 -10.6109 -1.3441 20 1 8.6772 -11.8958 -0.6651 21 1 9.1848 -10.8538 -2.7951 22 1 10.2168 -10.0249 -0.7632 23 6 6.2809 -6.8598 -1.2149 24 6 5.4578 -5.7570 -1.2032 25 6 3.5753 -0.6851 -1.2645 26 6 2.0396 -0.7207 -1.2502 27 1 1.6974 -1.7555 -1.2385 28 8 1.5379 -0.0650 -2.4166 29 1 -0.3633 0.5143 0.8898 30 1 -0.3633 0.5135 -0.8902 31 1 -0.3633 -1.0276 0.0005 32 1 1.6976 -1.7557 1.2382 33 1 1.6575 -0.2208 2.1398 34 1 3.9417 -1.2850 2.0981 35 1 3.9145 0.3405 1.3671 36 1 3.5225 -4.0064 -0.8900 37 1 3.5229 -4.0063 0.8899 38 1 5.1336 -5.3164 2.1356 39 1 6.5953 -7.2903 2.1553 40 1 6.5893 -9.9938 -2.7353 41 1 6.6023 -7.2866 -2.1536 42 1 5.1324 -5.3186 -2.1352 43 1 3.9188 0.3446 -1.3634 44 1 3.9483 -1.2786 -2.0993 45 1 1.8220 -0.4692 -3.2479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364810936.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:58 Heat of formation + Delta-G solvation = -117.197271 kcal Electronic energy + Delta-G solvation = -27719.656835 eV Core-core repulsion = 23828.125115 eV Total energy + Delta-G solvation = -3891.531721 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.42576 -37.81331 -36.78469 -36.07797 -35.50388 -34.20389 -33.70876 -31.53971 -30.27182 -29.47108 -27.91244 -27.68047 -24.29970 -23.45963 -22.89402 -21.20119 -20.64893 -20.11163 -18.73410 -17.69801 -17.47242 -17.27143 -16.18813 -16.07228 -15.45827 -15.18127 -14.89084 -14.60468 -14.48509 -13.97607 -13.86027 -13.84166 -13.42253 -13.18455 -12.71999 -12.66948 -12.43739 -12.18986 -12.10761 -12.01849 -11.79643 -11.73256 -11.65731 -11.61592 -11.57067 -11.22435 -11.15738 -10.88794 -10.82748 -10.79684 -10.56079 -10.45231 -10.20120 -9.85104 -9.56683 -9.27948 -8.99970 -7.64710 -7.47715 -6.95505 -4.52362 0.51862 2.60322 2.85998 2.92793 2.98995 3.01551 3.09549 3.80339 3.88800 4.18292 4.33539 4.43039 4.48654 4.52836 4.62621 4.79851 4.97781 5.00619 5.16944 5.23762 5.24944 5.39636 5.42319 5.50285 5.51581 5.55582 5.66864 5.73447 5.78164 5.96408 6.01194 6.10481 6.11454 6.16581 6.22264 6.48707 6.80264 6.88648 7.06737 7.15375 7.37556 7.42821 7.63503 7.86608 7.87794 8.09744 8.44794 8.69379 8.77196 9.97778 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023535 B = 0.002667 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.410606 B =10495.816008 C =10792.535196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.082 4.082 3 H 0.077 0.923 4 C -0.131 4.131 5 C 0.118 3.882 6 N -1.005 6.005 7 S 2.573 3.427 8 O -0.959 6.959 9 O -0.960 6.960 10 C -0.518 4.518 11 C -0.239 4.239 12 C -0.067 4.067 13 C -0.225 4.225 14 C 0.118 3.882 15 C -0.447 4.447 16 H 0.083 0.917 17 C 0.074 3.926 18 N -0.781 5.781 19 Si 0.912 3.088 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.166 4.166 24 C -0.081 4.081 25 C 0.091 3.909 26 C 0.094 3.906 27 H 0.061 0.939 28 O -0.563 6.563 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.285 0.715 41 H 0.123 0.877 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.505 13.732 1.175 17.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.100 4.100 3 H 0.096 0.904 4 C -0.170 4.170 5 C -0.007 4.007 6 N -0.841 5.841 7 S 2.675 3.325 8 O -0.950 6.950 9 O -0.951 6.951 10 C -0.649 4.649 11 C -0.244 4.244 12 C -0.087 4.087 13 C -0.245 4.245 14 C 0.114 3.886 15 C -0.476 4.476 16 H 0.101 0.899 17 C -0.146 4.146 18 N -0.405 5.405 19 Si 0.736 3.264 20 H -0.193 1.193 21 H -0.199 1.199 22 H -0.182 1.182 23 C -0.186 4.186 24 C -0.100 4.100 25 C -0.035 4.035 26 C 0.034 3.966 27 H 0.079 0.921 28 O -0.368 6.368 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.140 0.860 42 H 0.112 0.888 43 H 0.094 0.906 44 H 0.110 0.890 45 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -9.961 14.251 1.399 17.443 hybrid contribution 0.111 -1.247 -0.627 1.400 sum -9.850 13.004 0.771 16.331 Atomic orbital electron populations 1.21752 0.94461 1.01873 1.01930 1.21051 0.96357 1.00007 0.92626 0.90411 1.22049 0.95593 1.01671 0.97723 1.21426 0.93626 1.00291 0.85401 1.58096 1.63540 1.51756 1.10751 1.06895 0.75762 0.75560 0.74330 1.93519 1.70742 1.85367 1.45350 1.93521 1.70815 1.85358 1.45364 1.28968 1.11144 1.15087 1.09702 1.18104 1.10531 1.01047 0.94726 1.20468 0.97372 0.95708 0.95153 1.20986 1.05539 1.00710 0.97296 1.17737 0.88867 0.90981 0.91001 1.19742 1.19977 1.06021 1.01869 0.89856 1.26022 0.96121 0.97827 0.94638 1.69817 1.27845 1.32364 1.10464 0.86242 0.81726 0.79983 0.78486 1.19285 1.19868 1.18194 1.21319 1.02132 0.96210 0.98938 1.20592 0.98067 0.96333 0.95024 1.22166 0.94317 1.00865 0.86153 1.22316 0.92223 0.96008 0.86096 0.92057 1.86496 1.75340 1.58894 1.16042 0.92793 0.91828 0.92845 0.91035 0.90008 0.88766 0.91196 0.86329 0.86227 0.88680 0.88285 0.90439 0.85950 0.88781 0.90601 0.88960 0.77242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.03 37.16 0.34 -0.81 16 2 C -0.08 -0.71 2.43 -90.58 -0.22 -0.93 16 3 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 4 C -0.13 -1.07 5.36 -26.61 -0.14 -1.21 16 5 C 0.12 1.21 6.31 -3.71 -0.02 1.19 16 6 N -1.00 -12.48 3.21 -113.27 -0.36 -12.84 16 7 S 2.57 43.30 5.40 -107.50 -0.58 42.72 16 8 O -0.96 -18.83 16.72 -57.54 -0.96 -19.79 16 9 O -0.96 -19.06 16.71 -57.54 -0.96 -20.02 16 10 C -0.52 -8.33 6.29 36.00 0.23 -8.11 16 11 C -0.24 -5.11 5.16 -104.33 -0.54 -5.65 16 12 C -0.07 -1.50 9.67 -39.66 -0.38 -1.88 16 13 C -0.23 -5.44 9.80 -38.87 -0.38 -5.82 16 14 C 0.12 3.07 5.57 -106.83 -0.60 2.47 16 15 C -0.45 -11.43 9.05 -37.75 -0.34 -11.77 16 16 H 0.08 2.03 7.91 -52.49 -0.41 1.61 16 17 C 0.07 1.77 5.14 -17.34 -0.09 1.68 16 18 N -0.78 -19.28 10.96 55.55 0.61 -18.67 16 19 Si 0.91 17.86 29.59 -169.99 -5.03 12.83 16 20 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 21 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 22 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 23 C -0.17 -4.25 8.70 -38.87 -0.34 -4.59 16 24 C -0.08 -1.86 9.67 -39.66 -0.38 -2.25 16 25 C 0.09 0.98 5.97 -3.48 -0.02 0.96 16 26 C 0.09 0.87 3.08 -26.39 -0.08 0.79 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 O -0.56 -5.01 12.59 -35.23 -0.44 -5.45 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.56 7.65 -51.93 -0.40 0.16 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.99 7.10 -51.93 -0.37 0.62 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.12 1.62 8.08 -51.93 -0.42 1.20 16 37 H 0.12 1.61 8.08 -51.92 -0.42 1.19 16 38 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 39 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 40 H 0.28 6.33 8.30 -40.82 -0.34 6.00 16 41 H 0.12 3.18 6.16 -52.48 -0.32 2.86 16 42 H 0.09 1.95 8.06 -52.48 -0.42 1.53 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.09 1.00 7.09 -51.93 -0.37 0.63 16 45 H 0.38 2.02 9.09 45.56 0.41 2.44 16 LS Contribution 376.52 15.07 5.67 5.67 Total: -1.00 -31.93 376.52 -11.12 -43.05 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -6.08 Total: 8.41 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: -2.98 Total: -35.91 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: 0.24 Total: -31.51 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -2.37 Total: -45.26 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Atomic # 16 Polarization: 43.30 SS G_CDS: -0.58 Total: 42.72 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.93 -11.12 -43.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364810936.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.145 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds