Wall clock time and date at job start Tue Mar 31 2020 23:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.45645 * 2 1 4 4 C 1.53041 * 109.45912 * 119.97393 * 2 1 3 5 5 C 1.53191 * 109.31024 * 181.37267 * 4 2 1 6 6 N 1.46928 * 108.77686 * 305.36505 * 5 4 2 7 7 S 1.65596 * 120.63264 * 233.59065 * 6 5 4 8 8 O 1.42097 * 104.27603 * 333.92535 * 7 6 5 9 9 O 1.42099 * 104.27844 * 206.06869 * 7 6 5 10 10 C 1.81403 * 104.45282 * 89.99628 * 7 6 5 11 11 C 1.50693 * 109.47006 * 180.02562 * 10 7 6 12 12 C 1.38637 * 119.75507 * 90.00373 * 11 10 7 13 13 C 1.37618 * 120.25327 * 179.97438 * 12 11 10 14 14 C 1.40717 * 119.74333 * 359.97438 * 13 12 11 15 15 C 1.41393 * 120.24250 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99712 * 335.59724 * 15 14 13 17 17 C 1.39938 * 119.99935 * 155.86931 * 15 14 13 18 18 N 1.30832 * 120.00045 * 342.02958 * 17 15 14 19 19 Si 1.86794 * 120.00168 * 162.02874 * 17 15 14 20 20 H 1.48500 * 109.47274 * 90.00264 * 19 17 15 21 21 H 1.48502 * 109.47283 * 209.99821 * 19 17 15 22 22 H 1.48497 * 109.47359 * 330.00062 * 19 17 15 23 23 C 1.40713 * 119.50884 * 0.27597 * 14 13 12 24 24 C 1.37616 * 119.74701 * 359.46901 * 23 14 13 25 25 C 1.46928 * 118.73661 * 53.85942 * 6 5 4 26 26 C 1.53034 * 109.44724 * 240.03771 * 2 1 3 27 27 H 1.09000 * 109.49983 * 298.56910 * 26 2 1 28 28 O 1.42900 * 109.50134 * 58.66689 * 26 2 1 29 29 H 1.09004 * 109.47092 * 300.02648 * 1 2 3 30 30 H 1.09000 * 109.46839 * 60.02444 * 1 2 3 31 31 H 1.08993 * 109.47069 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.49479 * 61.41875 * 4 2 1 33 33 H 1.08995 * 109.49565 * 301.32048 * 4 2 1 34 34 H 1.08996 * 109.58497 * 185.57570 * 5 4 2 35 35 H 1.09003 * 109.58723 * 65.15055 * 5 4 2 36 36 H 1.08992 * 109.46861 * 59.99963 * 10 7 6 37 37 H 1.09005 * 109.46963 * 300.00379 * 10 7 6 38 38 H 1.08008 * 119.86770 * 359.97028 * 12 11 10 39 39 H 1.08001 * 120.12331 * 179.97438 * 13 12 11 40 40 H 0.96997 * 119.99694 * 180.02562 * 18 17 15 41 41 H 1.08008 * 120.12228 * 179.69698 * 23 14 13 42 42 H 1.08006 * 119.87639 * 180.27563 * 24 23 14 43 43 H 1.08996 * 109.58711 * 65.93158 * 25 6 5 44 44 H 1.09001 * 109.58261 * 186.35367 * 25 6 5 45 45 H 0.96707 * 114.00161 * 179.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 3.5714 -0.6890 1.2640 6 7 4.0677 -1.2493 -0.0004 7 16 5.1661 -2.4885 -0.0006 8 8 5.8518 -2.3492 1.2361 9 8 5.8511 -2.3494 -1.2378 10 6 4.1519 -3.9925 -0.0003 11 6 5.0490 -5.2033 0.0002 12 6 5.4584 -5.7558 1.2040 13 6 6.2773 -6.8618 1.2163 14 6 6.6985 -7.4322 0.0009 15 6 7.5402 -8.5683 0.0013 16 1 8.1727 -8.7714 0.8528 17 6 7.5580 -9.4263 -1.1041 18 7 6.5771 -9.3988 -1.9694 19 14 8.9822 -10.6109 -1.3441 20 1 8.6772 -11.8958 -0.6651 21 1 9.1848 -10.8538 -2.7951 22 1 10.2168 -10.0249 -0.7632 23 6 6.2809 -6.8598 -1.2149 24 6 5.4578 -5.7570 -1.2032 25 6 3.5753 -0.6851 -1.2645 26 6 2.0396 -0.7207 -1.2502 27 1 1.6974 -1.7555 -1.2385 28 8 1.5379 -0.0650 -2.4166 29 1 -0.3633 0.5143 0.8898 30 1 -0.3633 0.5135 -0.8902 31 1 -0.3633 -1.0276 0.0005 32 1 1.6976 -1.7557 1.2382 33 1 1.6575 -0.2208 2.1398 34 1 3.9417 -1.2850 2.0981 35 1 3.9145 0.3405 1.3671 36 1 3.5225 -4.0064 -0.8900 37 1 3.5229 -4.0063 0.8899 38 1 5.1336 -5.3164 2.1356 39 1 6.5953 -7.2903 2.1553 40 1 6.5893 -9.9938 -2.7353 41 1 6.6023 -7.2866 -2.1536 42 1 5.1324 -5.3186 -2.1352 43 1 3.9188 0.3446 -1.3634 44 1 3.9483 -1.2786 -2.0993 45 1 1.8220 -0.4692 -3.2479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364810936.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:57 Heat of formation + Delta-G solvation = -139.428843 kcal Electronic energy + Delta-G solvation = -27720.620869 eV Core-core repulsion = 23828.125115 eV Total energy + Delta-G solvation = -3892.495754 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.17503 -39.59957 -38.22475 -37.02430 -36.77939 -35.96506 -34.48064 -33.22850 -31.29643 -31.02782 -29.56446 -28.46586 -26.01294 -24.19706 -23.71928 -23.03063 -22.14596 -21.12214 -19.87325 -19.31267 -18.79729 -18.08661 -17.53731 -17.29047 -17.12414 -16.13458 -15.97975 -15.81207 -15.70034 -15.56131 -15.38572 -14.76244 -14.40073 -14.16551 -13.95899 -13.92482 -13.69257 -13.50977 -13.38383 -13.27169 -13.23140 -13.13413 -13.03096 -12.82419 -12.76833 -12.60876 -12.47155 -12.35287 -12.02237 -11.82373 -11.63061 -11.53407 -11.37559 -11.21216 -11.12039 -11.00442 -9.96122 -9.48838 -9.27781 -8.73110 -6.41914 -0.81631 0.86465 1.05192 1.37144 1.46711 1.53354 1.70243 2.17102 2.61842 2.89781 3.09971 3.27209 3.62984 3.66333 3.76566 3.80825 3.91556 3.96420 4.08003 4.28354 4.32407 4.41699 4.46599 4.48957 4.67242 4.68313 4.72877 4.82120 4.90863 4.93789 4.97460 5.06315 5.07177 5.15939 5.23159 5.23933 5.32851 5.45188 5.49075 5.57879 5.59675 5.81931 6.00744 6.02473 6.26603 6.58968 6.83487 6.86722 6.91309 8.23395 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023535 B = 0.002667 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.410606 B =10495.816008 C =10792.535196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.084 4.084 3 H 0.074 0.926 4 C -0.125 4.125 5 C 0.108 3.892 6 N -0.995 5.995 7 S 2.594 3.406 8 O -0.990 6.990 9 O -0.995 6.995 10 C -0.521 4.521 11 C -0.234 4.234 12 C -0.076 4.076 13 C -0.245 4.245 14 C 0.085 3.915 15 C -0.489 4.489 16 H 0.081 0.919 17 C 0.035 3.965 18 N -0.814 5.814 19 Si 0.984 3.016 20 H -0.258 1.258 21 H -0.264 1.264 22 H -0.260 1.260 23 C -0.194 4.194 24 C -0.092 4.092 25 C 0.086 3.914 26 C 0.098 3.902 27 H 0.068 0.932 28 O -0.572 6.572 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.126 0.874 39 H 0.106 0.894 40 H 0.292 0.708 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.228 15.150 1.688 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.103 4.103 3 H 0.093 0.907 4 C -0.164 4.164 5 C -0.016 4.016 6 N -0.834 5.834 7 S 2.695 3.305 8 O -0.980 6.980 9 O -0.985 6.985 10 C -0.652 4.652 11 C -0.238 4.238 12 C -0.095 4.095 13 C -0.265 4.265 14 C 0.082 3.918 15 C -0.518 4.518 16 H 0.099 0.901 17 C -0.182 4.182 18 N -0.439 5.439 19 Si 0.804 3.196 20 H -0.183 1.183 21 H -0.189 1.189 22 H -0.184 1.184 23 C -0.214 4.214 24 C -0.111 4.111 25 C -0.039 4.039 26 C 0.037 3.963 27 H 0.086 0.914 28 O -0.379 6.379 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.166 0.834 37 H 0.173 0.827 38 H 0.144 0.856 39 H 0.124 0.876 40 H 0.103 0.897 41 H 0.124 0.876 42 H 0.132 0.868 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -11.679 15.638 1.908 19.611 hybrid contribution 0.470 -1.396 -0.769 1.662 sum -11.209 14.242 1.139 18.160 Atomic orbital electron populations 1.21704 0.93855 1.02013 1.02023 1.21091 0.96810 0.99832 0.92540 0.90744 1.22044 0.93636 1.02367 0.98382 1.21717 0.95281 1.00603 0.84022 1.57670 1.63026 1.50305 1.12437 1.05697 0.75773 0.76117 0.72906 1.93486 1.72049 1.86048 1.46406 1.93484 1.72272 1.86087 1.46702 1.29041 1.10974 1.12141 1.13065 1.18535 1.09601 1.02016 0.93653 1.20877 0.96622 0.95106 0.96936 1.21238 1.06375 1.01817 0.97080 1.18090 0.89908 0.91895 0.91930 1.19962 1.21433 1.07235 1.03185 0.90052 1.26843 0.98347 0.99164 0.93829 1.69856 1.29370 1.33539 1.11135 0.85169 0.77941 0.77723 0.78738 1.18295 1.18873 1.18360 1.21328 1.04001 0.97731 0.98338 1.20919 0.97552 0.95760 0.96858 1.22359 0.95670 1.00783 0.85123 1.22282 0.90753 0.96571 0.86652 0.91387 1.86480 1.75300 1.59365 1.16802 0.91610 0.92878 0.92651 0.90388 0.87810 0.88883 0.90232 0.83389 0.82717 0.85593 0.87605 0.89706 0.87555 0.86832 0.90297 0.89183 0.75579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.03 71.98 0.65 -1.13 16 2 C -0.08 -1.18 2.43 -10.77 -0.03 -1.20 16 3 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 4 C -0.13 -1.55 5.36 30.67 0.16 -1.39 16 5 C 0.11 1.88 6.31 86.36 0.55 2.43 16 6 N -1.00 -22.04 3.21 -512.28 -1.65 -23.69 16 7 S 2.59 82.19 5.40 -56.49 -0.30 81.89 16 8 O -0.99 -37.29 16.72 -127.65 -2.13 -39.43 16 9 O -1.00 -38.52 16.71 -127.65 -2.13 -40.65 16 10 C -0.52 -15.14 6.29 71.23 0.45 -14.69 16 11 C -0.23 -9.71 5.16 -19.68 -0.10 -9.81 16 12 C -0.08 -3.32 9.67 22.22 0.21 -3.10 16 13 C -0.25 -12.12 9.80 22.73 0.22 -11.89 16 14 C 0.08 4.61 5.57 -21.29 -0.12 4.50 16 15 C -0.49 -26.23 9.05 23.46 0.21 -26.02 16 16 H 0.08 4.18 7.91 -2.91 -0.02 4.15 16 17 C 0.03 1.72 5.14 85.25 0.44 2.16 16 18 N -0.81 -41.69 10.96 21.83 0.24 -41.45 16 19 Si 0.98 37.45 29.59 68.60 2.03 39.48 16 20 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 21 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 22 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 23 C -0.19 -10.33 8.70 22.73 0.20 -10.13 16 24 C -0.09 -4.25 9.67 22.22 0.21 -4.03 16 25 C 0.09 1.65 5.97 86.51 0.52 2.16 16 26 C 0.10 1.52 3.08 30.82 0.09 1.62 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 28 O -0.57 -8.74 12.59 -148.98 -1.88 -10.62 16 29 H 0.06 0.68 8.14 -2.38 -0.02 0.67 16 30 H 0.05 0.80 7.65 -2.39 -0.02 0.78 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 1.68 7.10 -2.39 -0.02 1.66 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.15 3.48 8.08 -2.39 -0.02 3.46 16 37 H 0.15 3.45 8.08 -2.39 -0.02 3.43 16 38 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 39 H 0.11 4.88 8.06 -2.91 -0.02 4.85 16 40 H 0.29 13.39 8.30 -92.71 -0.77 12.62 16 41 H 0.11 5.85 6.16 -2.91 -0.02 5.84 16 42 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 43 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.09 1.76 7.09 -2.39 -0.02 1.75 16 45 H 0.39 3.29 9.09 -74.05 -0.67 2.61 16 Total: -1.00 -71.60 376.52 -1.83 -73.43 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: 0.32 Total: 31.59 kcal Atomic # 6 Polarization: -74.21 SS G_CDS: 3.67 Total: -70.54 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: -1.41 Total: -65.14 kcal Atomic # 8 Polarization: -84.55 SS G_CDS: -6.14 Total: -90.70 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Atomic # 16 Polarization: 82.19 SS G_CDS: -0.30 Total: 81.89 kcal Total: -71.60 -1.83 -73.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364810936.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.001 kcal (2) G-P(sol) polarization free energy of solvation -71.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds