Wall clock time and date at job start Tue Mar 31 2020 23:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.25598 * 2 1 4 4 C 1.55187 * 109.26136 * 240.51440 * 2 1 3 5 5 C 1.55327 * 108.87963 * 201.86635 * 4 2 1 6 6 N 1.43423 * 116.23695 * 319.46481 * 5 4 2 7 7 S 1.65608 * 120.63579 * 269.35094 * 6 5 4 8 8 O 1.42093 * 106.40140 * 336.46312 * 7 6 5 9 9 O 1.42094 * 106.40043 * 203.54292 * 7 6 5 10 10 C 1.76202 * 107.21551 * 90.00088 * 7 6 5 11 11 C 1.38628 * 119.75052 * 269.72605 * 10 7 6 12 12 C 1.37621 * 120.24760 * 179.76621 * 11 10 7 13 13 C 1.40714 * 119.74477 * 0.48632 * 12 11 10 14 14 C 1.41394 * 120.24371 * 179.79171 * 13 12 11 15 15 H 1.08003 * 120.00199 * 150.20861 * 14 13 12 16 16 C 1.39951 * 120.00068 * 330.20249 * 14 13 12 17 17 N 1.30824 * 119.99889 * 161.73786 * 16 14 13 18 18 Si 1.86798 * 119.99948 * 341.73947 * 16 14 13 19 19 H 1.48500 * 109.47301 * 95.40548 * 18 16 14 20 20 H 1.48500 * 109.47054 * 215.41087 * 18 16 14 21 21 H 1.48507 * 109.47323 * 335.40763 * 18 16 14 22 22 C 1.40715 * 119.51128 * 359.76859 * 13 12 11 23 23 C 1.37619 * 119.74813 * 359.97438 * 22 13 12 24 24 C 1.50117 * 118.72810 * 89.62620 * 6 5 4 25 25 C 1.47478 * 106.48675 * 291.09824 * 24 6 5 26 26 H 1.09008 * 108.62099 * 295.88271 * 25 24 6 27 27 C 1.53002 * 108.54881 * 178.01343 * 25 24 6 28 28 O 1.39650 * 109.25525 * 119.43991 * 2 1 3 29 29 H 1.08996 * 109.47245 * 179.48196 * 1 2 3 30 30 H 1.09003 * 109.47360 * 299.47955 * 1 2 3 31 31 H 1.09001 * 109.46863 * 59.48141 * 1 2 3 32 32 H 1.09008 * 109.56782 * 82.04599 * 4 2 1 33 33 H 1.08997 * 109.66765 * 321.74871 * 4 2 1 34 34 H 1.08994 * 108.13042 * 197.70770 * 5 4 2 35 35 H 1.09002 * 108.12376 * 81.22003 * 5 4 2 36 36 H 1.07996 * 119.87819 * 0.02562 * 11 10 7 37 37 H 1.08003 * 120.12713 * 180.22810 * 12 11 10 38 38 H 0.97003 * 119.99705 * 180.02562 * 17 16 14 39 39 H 1.07999 * 120.12699 * 180.02562 * 22 13 12 40 40 H 1.07991 * 119.87947 * 180.02562 * 23 22 13 41 41 H 1.08991 * 109.99109 * 50.39172 * 24 6 5 42 42 H 1.09006 * 109.98657 * 171.76064 * 24 6 5 43 43 H 1.08996 * 109.46793 * 295.84066 * 27 25 24 44 44 H 1.08998 * 109.47579 * 55.85146 * 27 25 24 45 45 H 1.09006 * 109.46631 * 175.84999 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8894 1.0290 0.0000 4 6 2.0419 -0.7211 -1.2753 5 6 3.4953 -1.2096 -1.0272 6 7 4.3546 -0.3081 -0.3159 7 16 5.2795 0.7969 -1.1321 8 8 5.4521 0.2834 -2.4457 9 8 6.3658 1.1216 -0.2756 10 6 4.3175 2.2642 -1.2939 11 6 3.5063 2.4359 -2.4049 12 6 2.7470 3.5758 -2.5393 13 6 2.8041 4.5735 -1.5487 14 6 2.0318 5.7508 -1.6783 15 1 1.6832 6.2678 -0.7964 16 6 1.7192 6.2463 -2.9493 17 7 0.7365 7.0974 -3.0960 18 14 2.7050 5.6923 -4.4361 19 1 2.0050 4.5645 -5.1019 20 1 2.8405 6.8229 -5.3894 21 1 4.0533 5.2491 -3.9990 22 6 3.6351 4.3908 -0.4279 23 6 4.3816 3.2405 -0.3116 24 6 4.4042 -0.3895 1.1822 25 6 3.0952 0.0827 1.6706 26 1 2.9793 1.1315 1.3971 27 6 3.0762 -0.0278 3.1965 28 8 1.9905 -0.6480 1.1481 29 1 -0.3633 -1.0276 -0.0093 30 1 -0.3634 0.5057 0.8946 31 1 -0.3633 0.5219 -0.8853 32 1 2.0282 -0.0283 -2.1168 33 1 1.4020 -1.5755 -1.4954 34 1 3.9517 -1.4212 -1.9941 35 1 3.4481 -2.1446 -0.4689 36 1 3.4669 1.6705 -3.1657 37 1 2.1129 3.7060 -3.4038 38 1 0.5197 7.4405 -3.9771 39 1 3.6862 5.1499 0.3386 40 1 5.0197 3.0979 0.5478 41 1 4.5709 -1.4205 1.4941 42 1 5.2003 0.2498 1.5640 43 1 3.1544 -1.0758 3.4858 44 1 3.9173 0.5275 3.6116 45 1 2.1432 0.3861 3.5792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364883018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:02 Heat of formation + Delta-G solvation = -102.681004 kcal Electronic energy + Delta-G solvation = -29478.688626 eV Core-core repulsion = 25587.786377 eV Total energy + Delta-G solvation = -3890.902248 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.94120 -37.90938 -36.77987 -35.55595 -35.26665 -34.23516 -34.04794 -30.92936 -30.52563 -29.96852 -28.75879 -26.06516 -25.79641 -23.27860 -21.95846 -21.57006 -21.16629 -20.87705 -18.54485 -17.83771 -17.58785 -17.01639 -16.48672 -16.16663 -15.54184 -15.06456 -14.84477 -14.49685 -14.16639 -13.88057 -13.60250 -13.43701 -13.29899 -13.01226 -12.90845 -12.61863 -12.58082 -12.35361 -12.18935 -11.97842 -11.94137 -11.81484 -11.75673 -11.56937 -11.42104 -11.38272 -11.10817 -10.80494 -10.78360 -10.62658 -10.52435 -10.36455 -9.93911 -9.84641 -9.49295 -9.42734 -8.79112 -8.17883 -8.01250 -7.38129 -4.97140 1.01184 1.96319 2.51136 2.88831 3.01591 3.10502 3.37221 3.70779 3.89707 4.06816 4.34930 4.69109 4.87191 4.95080 4.98846 5.06943 5.08543 5.15493 5.26741 5.34816 5.52085 5.55849 5.64836 5.68549 5.76321 5.78230 5.80873 5.84504 5.93656 5.96953 6.05895 6.09037 6.20645 6.27130 6.29961 6.32263 6.45253 6.51383 6.82128 6.84762 7.09327 7.17165 7.23612 7.36653 7.53092 7.77960 7.95564 8.28254 8.37961 9.60481 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013241 B = 0.004837 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.114895 B = 5787.719180 C = 6411.036061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.077 3.923 3 H 0.075 0.925 4 C -0.161 4.161 5 C 0.123 3.877 6 N -1.000 6.000 7 S 2.689 3.311 8 O -0.978 6.978 9 O -0.980 6.980 10 C -0.793 4.793 11 C 0.017 3.983 12 C -0.252 4.252 13 C 0.116 3.884 14 C -0.414 4.414 15 H 0.099 0.901 16 C 0.082 3.918 17 N -0.778 5.778 18 Si 0.913 3.087 19 H -0.264 1.264 20 H -0.284 1.284 21 H -0.239 1.239 22 C -0.220 4.220 23 C 0.003 3.997 24 C 0.102 3.898 25 C 0.056 3.944 26 H 0.073 0.927 27 C -0.154 4.154 28 O -0.346 6.346 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.294 0.706 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.107 0.893 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.476 -11.823 5.860 13.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.018 3.982 3 H 0.093 0.907 4 C -0.201 4.201 5 C -0.005 4.005 6 N -0.835 5.835 7 S 2.788 3.212 8 O -0.969 6.969 9 O -0.970 6.970 10 C -0.888 4.888 11 C -0.003 4.003 12 C -0.272 4.272 13 C 0.112 3.888 14 C -0.441 4.441 15 H 0.117 0.883 16 C -0.142 4.142 17 N -0.399 5.399 18 Si 0.738 3.262 19 H -0.189 1.189 20 H -0.211 1.211 21 H -0.162 1.162 22 C -0.240 4.240 23 C -0.017 4.017 24 C -0.022 4.022 25 C -0.003 4.003 26 H 0.091 0.909 27 C -0.212 4.212 28 O -0.264 6.264 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.104 0.896 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.125 0.875 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.085 -12.004 5.533 13.262 hybrid contribution -0.471 0.648 -0.813 1.142 sum 0.614 -11.355 4.720 12.312 Atomic orbital electron populations 1.21984 0.94564 1.02084 1.02417 1.22163 0.94263 0.96462 0.85323 0.90732 1.23452 0.96671 1.01527 0.98480 1.20716 0.89889 0.92627 0.97225 1.57869 1.59156 1.51640 1.14805 1.01466 0.73751 0.73426 0.72534 1.93478 1.85655 1.80006 1.37777 1.93474 1.50884 1.84742 1.67927 1.29307 1.29554 1.21460 1.08468 1.20175 0.90719 0.96212 0.93232 1.21070 1.06962 0.96449 1.02719 1.17894 0.88009 0.91812 0.91052 1.19853 1.23284 1.06226 0.94698 0.88329 1.26373 0.93298 0.93133 1.01385 1.69673 1.20709 1.22137 1.27381 0.86254 0.82921 0.78088 0.78924 1.18933 1.21145 1.16209 1.21019 1.02470 0.98889 1.01650 1.20208 0.94456 0.92356 0.94667 1.21724 0.98218 1.03772 0.78478 1.21602 0.87857 0.96324 0.94487 0.90949 1.21946 1.02795 1.02756 0.93736 1.87630 1.46255 1.51138 1.41397 0.92363 0.92318 0.91360 0.90726 0.90353 0.90249 0.90795 0.87478 0.87682 0.89552 0.87522 0.87465 0.89858 0.87528 0.91853 0.91129 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.45 37.16 0.35 -1.54 16 2 C 0.08 1.05 2.83 -25.57 -0.07 0.98 16 3 H 0.07 1.17 6.66 -51.93 -0.35 0.83 16 4 C -0.16 -2.09 6.15 -24.34 -0.15 -2.24 16 5 C 0.12 1.64 5.30 -4.44 -0.02 1.61 16 6 N -1.00 -14.66 2.89 -115.29 -0.33 -14.99 16 7 S 2.69 49.23 5.73 -107.50 -0.62 48.61 16 8 O -0.98 -19.91 15.84 -57.18 -0.91 -20.81 16 9 O -0.98 -19.37 15.90 -57.18 -0.91 -20.28 16 10 C -0.79 -15.86 6.00 -39.29 -0.24 -16.09 16 11 C 0.02 0.35 9.44 -39.66 -0.37 -0.03 16 12 C -0.25 -5.65 7.18 -38.87 -0.28 -5.93 16 13 C 0.12 2.71 5.10 -106.83 -0.55 2.17 16 14 C -0.41 -10.11 9.57 -37.74 -0.36 -10.47 16 15 H 0.10 2.48 8.06 -52.48 -0.42 2.06 16 16 C 0.08 1.94 5.40 -17.34 -0.09 1.85 16 17 N -0.78 -18.67 13.93 55.55 0.77 -17.90 16 18 Si 0.91 19.33 24.52 -169.99 -4.17 15.17 16 19 H -0.26 -5.39 6.71 56.52 0.38 -5.01 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.24 -5.33 6.86 56.52 0.39 -4.94 16 22 C -0.22 -4.73 9.80 -38.87 -0.38 -5.11 16 23 C 0.00 0.06 9.49 -39.66 -0.38 -0.31 16 24 C 0.10 1.27 5.58 -4.68 -0.03 1.24 16 25 C 0.06 0.70 2.63 -29.39 -0.08 0.62 16 26 H 0.07 1.00 6.77 -51.92 -0.35 0.65 16 27 C -0.15 -1.52 9.42 37.16 0.35 -1.17 16 28 O -0.35 -4.62 9.44 -31.96 -0.30 -4.92 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.03 8.09 -51.92 -0.42 0.61 16 33 H 0.08 0.87 7.98 -51.93 -0.41 0.45 16 34 H 0.08 1.08 6.94 -51.93 -0.36 0.72 16 35 H 0.07 0.87 7.98 -51.93 -0.41 0.45 16 36 H 0.11 2.05 7.59 -52.49 -0.40 1.65 16 37 H 0.11 2.32 4.73 -52.48 -0.25 2.07 16 38 H 0.29 6.33 8.30 -40.82 -0.34 5.99 16 39 H 0.11 2.13 8.06 -52.49 -0.42 1.70 16 40 H 0.11 1.91 7.60 -52.49 -0.40 1.51 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.11 1.29 7.01 -51.93 -0.36 0.92 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 365.00 15.07 5.50 5.50 Total: -1.00 -27.88 365.00 -9.94 -37.82 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.69 Total: 6.22 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: -2.29 Total: -34.42 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.44 Total: -32.89 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -2.12 Total: -46.01 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.17 Total: 15.17 kcal Atomic # 16 Polarization: 49.23 SS G_CDS: -0.62 Total: 48.61 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.88 -9.94 -37.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364883018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.858 kcal (2) G-P(sol) polarization free energy of solvation -27.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds