Wall clock time and date at job start Tue Mar 31 2020 23:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.25598 * 2 1 4 4 C 1.55187 * 109.26136 * 240.51440 * 2 1 3 5 5 C 1.55327 * 108.87963 * 201.86635 * 4 2 1 6 6 N 1.43423 * 116.23695 * 319.46481 * 5 4 2 7 7 S 1.65608 * 120.63579 * 269.35094 * 6 5 4 8 8 O 1.42093 * 106.40140 * 336.46312 * 7 6 5 9 9 O 1.42094 * 106.40043 * 203.54292 * 7 6 5 10 10 C 1.76202 * 107.21551 * 90.00088 * 7 6 5 11 11 C 1.38628 * 119.75052 * 269.72605 * 10 7 6 12 12 C 1.37621 * 120.24760 * 179.76621 * 11 10 7 13 13 C 1.40714 * 119.74477 * 0.48632 * 12 11 10 14 14 C 1.41394 * 120.24371 * 179.79171 * 13 12 11 15 15 H 1.08003 * 120.00199 * 150.20861 * 14 13 12 16 16 C 1.39951 * 120.00068 * 330.20249 * 14 13 12 17 17 N 1.30824 * 119.99889 * 161.73786 * 16 14 13 18 18 Si 1.86798 * 119.99948 * 341.73947 * 16 14 13 19 19 H 1.48500 * 109.47301 * 95.40548 * 18 16 14 20 20 H 1.48500 * 109.47054 * 215.41087 * 18 16 14 21 21 H 1.48507 * 109.47323 * 335.40763 * 18 16 14 22 22 C 1.40715 * 119.51128 * 359.76859 * 13 12 11 23 23 C 1.37619 * 119.74813 * 359.97438 * 22 13 12 24 24 C 1.50117 * 118.72810 * 89.62620 * 6 5 4 25 25 C 1.47478 * 106.48675 * 291.09824 * 24 6 5 26 26 H 1.09008 * 108.62099 * 295.88271 * 25 24 6 27 27 C 1.53002 * 108.54881 * 178.01343 * 25 24 6 28 28 O 1.39650 * 109.25525 * 119.43991 * 2 1 3 29 29 H 1.08996 * 109.47245 * 179.48196 * 1 2 3 30 30 H 1.09003 * 109.47360 * 299.47955 * 1 2 3 31 31 H 1.09001 * 109.46863 * 59.48141 * 1 2 3 32 32 H 1.09008 * 109.56782 * 82.04599 * 4 2 1 33 33 H 1.08997 * 109.66765 * 321.74871 * 4 2 1 34 34 H 1.08994 * 108.13042 * 197.70770 * 5 4 2 35 35 H 1.09002 * 108.12376 * 81.22003 * 5 4 2 36 36 H 1.07996 * 119.87819 * 0.02562 * 11 10 7 37 37 H 1.08003 * 120.12713 * 180.22810 * 12 11 10 38 38 H 0.97003 * 119.99705 * 180.02562 * 17 16 14 39 39 H 1.07999 * 120.12699 * 180.02562 * 22 13 12 40 40 H 1.07991 * 119.87947 * 180.02562 * 23 22 13 41 41 H 1.08991 * 109.99109 * 50.39172 * 24 6 5 42 42 H 1.09006 * 109.98657 * 171.76064 * 24 6 5 43 43 H 1.08996 * 109.46793 * 295.84066 * 27 25 24 44 44 H 1.08998 * 109.47579 * 55.85146 * 27 25 24 45 45 H 1.09006 * 109.46631 * 175.84999 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8894 1.0290 0.0000 4 6 2.0419 -0.7211 -1.2753 5 6 3.4953 -1.2096 -1.0272 6 7 4.3546 -0.3081 -0.3159 7 16 5.2795 0.7969 -1.1321 8 8 5.4521 0.2834 -2.4457 9 8 6.3658 1.1216 -0.2756 10 6 4.3175 2.2642 -1.2939 11 6 3.5063 2.4359 -2.4049 12 6 2.7470 3.5758 -2.5393 13 6 2.8041 4.5735 -1.5487 14 6 2.0318 5.7508 -1.6783 15 1 1.6832 6.2678 -0.7964 16 6 1.7192 6.2463 -2.9493 17 7 0.7365 7.0974 -3.0960 18 14 2.7050 5.6923 -4.4361 19 1 2.0050 4.5645 -5.1019 20 1 2.8405 6.8229 -5.3894 21 1 4.0533 5.2491 -3.9990 22 6 3.6351 4.3908 -0.4279 23 6 4.3816 3.2405 -0.3116 24 6 4.4042 -0.3895 1.1822 25 6 3.0952 0.0827 1.6706 26 1 2.9793 1.1315 1.3971 27 6 3.0762 -0.0278 3.1965 28 8 1.9905 -0.6480 1.1481 29 1 -0.3633 -1.0276 -0.0093 30 1 -0.3634 0.5057 0.8946 31 1 -0.3633 0.5219 -0.8853 32 1 2.0282 -0.0283 -2.1168 33 1 1.4020 -1.5755 -1.4954 34 1 3.9517 -1.4212 -1.9941 35 1 3.4481 -2.1446 -0.4689 36 1 3.4669 1.6705 -3.1657 37 1 2.1129 3.7060 -3.4038 38 1 0.5197 7.4405 -3.9771 39 1 3.6862 5.1499 0.3386 40 1 5.0197 3.0979 0.5478 41 1 4.5709 -1.4205 1.4941 42 1 5.2003 0.2498 1.5640 43 1 3.1544 -1.0758 3.4858 44 1 3.9173 0.5275 3.6116 45 1 2.1432 0.3861 3.5792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364883018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:01 Heat of formation + Delta-G solvation = -119.765103 kcal Electronic energy + Delta-G solvation = -29479.429448 eV Core-core repulsion = 25587.786377 eV Total energy + Delta-G solvation = -3891.643070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.97691 -39.63072 -38.32222 -36.90093 -36.60056 -35.80807 -35.22655 -32.66679 -31.67657 -31.51103 -29.78692 -27.55061 -27.03910 -24.36406 -23.65544 -22.90425 -22.51301 -21.99652 -19.93537 -19.56000 -19.01360 -18.46876 -17.66487 -17.31976 -17.20280 -16.36776 -16.00102 -15.86143 -15.70242 -15.48205 -15.00124 -14.69379 -14.59182 -14.38951 -14.25523 -14.06309 -13.93418 -13.56420 -13.45360 -13.17876 -13.15026 -13.09830 -12.91537 -12.83518 -12.83022 -12.78066 -12.62156 -12.53749 -12.23385 -11.87456 -11.70244 -11.59457 -11.48392 -11.41684 -11.16131 -10.48921 -10.00965 -9.87475 -9.71247 -9.14982 -6.80064 -0.45685 0.25907 0.78184 1.18262 1.31110 1.39530 1.97111 2.01859 2.36659 2.83182 2.90304 3.27806 3.37131 3.75517 3.86266 3.97068 4.08522 4.12524 4.16049 4.20123 4.26948 4.35508 4.50724 4.55820 4.62274 4.71930 4.74852 4.78295 4.81180 4.81747 4.87042 4.97811 5.04621 5.10681 5.11686 5.16985 5.22139 5.30853 5.35369 5.37343 5.43953 5.50659 5.71116 5.74528 6.01528 6.18598 6.33167 6.49975 6.59809 7.90138 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013241 B = 0.004837 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.114895 B = 5787.719180 C = 6411.036061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.076 3.924 3 H 0.048 0.952 4 C -0.161 4.161 5 C 0.116 3.884 6 N -0.993 5.993 7 S 2.711 3.289 8 O -0.996 6.996 9 O -0.991 6.991 10 C -0.790 4.790 11 C 0.013 3.987 12 C -0.265 4.265 13 C 0.107 3.893 14 C -0.452 4.452 15 H 0.074 0.926 16 C 0.058 3.942 17 N -0.813 5.813 18 Si 0.953 3.047 19 H -0.252 1.252 20 H -0.269 1.269 21 H -0.258 1.258 22 C -0.233 4.233 23 C 0.006 3.994 24 C 0.098 3.902 25 C 0.053 3.947 26 H 0.053 0.947 27 C -0.150 4.150 28 O -0.347 6.347 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.106 0.894 38 H 0.303 0.697 39 H 0.115 0.885 40 H 0.133 0.867 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.438 -14.687 6.410 16.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.018 3.982 3 H 0.066 0.934 4 C -0.201 4.201 5 C -0.011 4.011 6 N -0.830 5.830 7 S 2.807 3.193 8 O -0.987 6.987 9 O -0.981 6.981 10 C -0.882 4.882 11 C -0.007 4.007 12 C -0.285 4.285 13 C 0.103 3.897 14 C -0.479 4.479 15 H 0.092 0.908 16 C -0.162 4.162 17 N -0.436 5.436 18 Si 0.776 3.224 19 H -0.177 1.177 20 H -0.195 1.195 21 H -0.182 1.182 22 C -0.253 4.253 23 C -0.013 4.013 24 C -0.025 4.025 25 C -0.006 4.006 26 H 0.071 0.929 27 C -0.208 4.208 28 O -0.265 6.265 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.143 0.857 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.133 0.867 40 H 0.150 0.850 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.024 -14.827 6.078 16.152 hybrid contribution -0.661 1.294 -0.815 1.666 sum 1.363 -13.533 5.262 14.584 Atomic orbital electron populations 1.21964 0.93762 1.02984 1.02123 1.22110 0.94997 0.95172 0.85967 0.93440 1.23479 0.96999 1.02076 0.97569 1.20920 0.89588 0.93077 0.97501 1.57599 1.59049 1.50304 1.16006 1.00854 0.73389 0.72925 0.72137 1.93455 1.85976 1.79956 1.39279 1.93458 1.51570 1.85060 1.68051 1.29875 1.27901 1.22831 1.07608 1.20421 0.90328 0.95987 0.93918 1.21181 1.07676 0.96873 1.02796 1.18059 0.88059 0.91603 0.91957 1.19782 1.26018 1.07617 0.94490 0.90794 1.26825 0.93662 0.93076 1.02684 1.69674 1.21848 1.23618 1.28435 0.85657 0.80873 0.78629 0.77246 1.17653 1.19495 1.18163 1.21241 1.02593 0.99901 1.01593 1.20503 0.93935 0.91558 0.95351 1.22024 0.98275 1.05705 0.76526 1.21664 0.87656 0.95156 0.96173 0.92943 1.21937 1.03318 1.03923 0.91612 1.87623 1.46631 1.51073 1.41181 0.90792 0.92693 0.91673 0.91934 0.88030 0.90447 0.88289 0.85743 0.87625 0.88599 0.86674 0.84957 0.86999 0.87050 0.90493 0.89654 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.45 71.98 0.68 -2.84 16 2 C 0.08 1.97 2.83 31.34 0.09 2.06 16 3 H 0.05 1.48 6.66 -2.39 -0.02 1.46 16 4 C -0.16 -3.82 6.15 32.14 0.20 -3.62 16 5 C 0.12 2.73 5.30 87.75 0.47 3.20 16 6 N -0.99 -26.27 2.89 -518.67 -1.50 -27.77 16 7 S 2.71 93.15 5.73 -56.49 -0.32 92.83 16 8 O -1.00 -38.35 15.84 -128.00 -2.03 -40.38 16 9 O -0.99 -36.62 15.90 -128.00 -2.04 -38.65 16 10 C -0.79 -30.60 6.00 22.46 0.13 -30.47 16 11 C 0.01 0.54 9.44 22.22 0.21 0.75 16 12 C -0.27 -11.97 7.18 22.73 0.16 -11.81 16 13 C 0.11 5.10 5.10 -21.29 -0.11 4.99 16 14 C -0.45 -23.16 9.57 23.46 0.22 -22.93 16 15 H 0.07 4.01 8.06 -2.91 -0.02 3.98 16 16 C 0.06 2.84 5.40 85.26 0.46 3.30 16 17 N -0.81 -40.35 13.93 21.83 0.30 -40.05 16 18 Si 0.95 40.02 24.52 68.60 1.68 41.70 16 19 H -0.25 -9.95 6.71 99.48 0.67 -9.29 16 20 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 21 H -0.26 -11.48 6.86 99.48 0.68 -10.79 16 22 C -0.23 -10.12 9.80 22.73 0.22 -9.89 16 23 C 0.01 0.24 9.49 22.22 0.21 0.45 16 24 C 0.10 2.09 5.58 83.95 0.47 2.56 16 25 C 0.05 1.18 2.63 28.87 0.08 1.25 16 26 H 0.05 1.39 6.77 -2.38 -0.02 1.37 16 27 C -0.15 -2.52 9.42 71.98 0.68 -1.84 16 28 O -0.35 -8.38 9.44 -137.29 -1.30 -9.67 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.63 8.09 -2.38 -0.02 1.61 16 33 H 0.10 1.93 7.98 -2.39 -0.02 1.91 16 34 H 0.08 1.89 6.94 -2.39 -0.02 1.87 16 35 H 0.10 1.90 7.98 -2.39 -0.02 1.88 16 36 H 0.12 4.61 7.59 -2.91 -0.02 4.58 16 37 H 0.11 4.69 4.73 -2.91 -0.01 4.67 16 38 H 0.30 13.37 8.30 -92.71 -0.77 12.60 16 39 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 40 H 0.13 4.45 7.60 -2.92 -0.02 4.43 16 41 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.11 2.31 7.01 -2.38 -0.02 2.29 16 43 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -59.91 365.00 -0.10 -60.01 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.92 Total: 26.83 kcal Atomic # 6 Polarization: -69.02 SS G_CDS: 4.17 Total: -64.85 kcal Atomic # 7 Polarization: -66.62 SS G_CDS: -1.19 Total: -67.82 kcal Atomic # 8 Polarization: -83.35 SS G_CDS: -5.36 Total: -88.71 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 1.68 Total: 41.70 kcal Atomic # 16 Polarization: 93.15 SS G_CDS: -0.32 Total: 92.83 kcal Total: -59.91 -0.10 -60.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364883018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.755 kcal (2) G-P(sol) polarization free energy of solvation -59.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds