Wall clock time and date at job start Tue Mar 31 2020 22:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47090 * 2 1 4 4 C 1.50701 * 109.47402 * 239.99911 * 2 1 3 5 5 H 1.07999 * 120.00552 * 239.99957 * 4 2 1 6 6 C 1.37885 * 119.99584 * 59.99920 * 4 2 1 7 7 N 1.31508 * 120.00264 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99638 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47606 * 90.00085 * 8 6 4 10 10 H 1.48501 * 109.46831 * 210.00109 * 8 6 4 11 11 H 1.48499 * 109.47350 * 329.99645 * 8 6 4 12 12 C 1.52998 * 109.47274 * 120.00102 * 2 1 3 13 13 S 1.81406 * 109.46954 * 300.00142 * 12 2 1 14 14 O 1.42109 * 110.54076 * 291.62297 * 13 12 2 15 15 O 1.42096 * 110.54434 * 68.37197 * 13 12 2 16 16 N 1.65596 * 104.44851 * 180.02562 * 13 12 2 17 17 C 1.47067 * 136.05368 * 269.62692 * 16 13 12 18 18 C 1.53239 * 88.08551 * 207.20549 * 17 16 13 19 19 O 1.42900 * 114.51022 * 220.46251 * 18 17 16 20 20 C 1.35898 * 116.99647 * 250.61592 * 19 18 17 21 21 C 1.38732 * 120.05921 * 5.45482 * 20 19 18 22 22 C 1.38141 * 119.94886 * 179.74396 * 21 20 19 23 23 C 1.38273 * 120.05339 * 0.50699 * 22 21 20 24 24 C 1.38265 * 120.10951 * 359.76384 * 23 22 21 25 25 C 1.38144 * 120.05503 * 359.97438 * 24 23 22 26 26 C 1.47063 * 136.06167 * 89.99811 * 16 13 12 27 27 H 1.08996 * 109.47312 * 300.00031 * 1 2 3 28 28 H 1.09004 * 109.47188 * 59.99949 * 1 2 3 29 29 H 1.09003 * 109.47214 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46809 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46630 * 300.00005 * 3 2 1 32 32 H 1.08996 * 109.47069 * 59.99819 * 3 2 1 33 33 H 0.96997 * 120.00013 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47032 * 180.02562 * 12 2 1 35 35 H 1.08993 * 109.47151 * 59.99769 * 12 2 1 36 36 H 1.09001 * 113.46866 * 321.93589 * 17 16 13 37 37 H 1.09005 * 113.47022 * 92.37995 * 17 16 13 38 38 H 1.09002 * 114.01824 * 87.71240 * 18 17 16 39 39 H 1.08005 * 120.02781 * 359.97438 * 21 20 19 40 40 H 1.07998 * 119.97803 * 180.27055 * 22 21 20 41 41 H 1.07999 * 119.94601 * 179.74408 * 23 22 21 42 42 H 1.07997 * 119.97071 * 179.97438 * 24 23 22 43 43 H 1.08003 * 120.02773 * 179.97438 * 25 24 23 44 44 H 1.08998 * 113.46894 * 267.62414 * 26 16 13 45 45 H 1.09007 * 113.46554 * 38.06273 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.3429 -2.1616 -4.4119 10 1 2.4866 -0.1413 -5.1122 11 1 3.6293 -1.7582 -3.7122 12 6 2.0400 -0.7213 1.2492 13 16 1.4352 0.1339 2.7304 14 8 2.0479 1.4101 2.8544 15 8 0.0279 -0.0183 2.8544 16 7 2.0541 -0.7400 3.9936 17 6 1.6137 -1.8842 4.8058 18 6 2.4809 -1.3420 5.9470 19 8 3.1929 -2.3427 6.6775 20 6 2.7771 -2.5927 7.9470 21 6 1.6381 -1.9728 8.4399 22 6 1.2145 -2.2326 9.7289 23 6 1.9307 -3.1018 10.5311 24 6 3.0694 -3.7166 10.0441 25 6 3.4940 -3.4641 8.7540 26 6 3.2828 -0.7093 4.8011 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 0.7089 1.1614 -3.4844 34 1 3.1299 -0.7208 1.2494 35 1 1.6766 -1.7488 1.2492 36 1 0.5471 -1.8725 5.0300 37 1 1.9538 -2.8459 4.4215 38 1 1.9719 -0.6215 6.5872 39 1 1.0808 -1.2904 7.8152 40 1 0.3255 -1.7537 10.1116 41 1 1.6003 -3.3005 11.5400 42 1 3.6273 -4.3947 10.6728 43 1 4.3837 -3.9443 8.3742 44 1 4.0719 -1.3548 4.4155 45 1 3.6325 0.2994 5.0212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365008292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:12 Heat of formation + Delta-G solvation = -35.650372 kcal Electronic energy + Delta-G solvation = -27359.585013 eV Core-core repulsion = 23471.589431 eV Total energy + Delta-G solvation = -3887.995582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.79413 -39.08057 -36.89665 -36.61709 -36.30902 -35.38414 -31.69648 -31.33722 -30.23203 -28.17749 -26.55411 -26.27301 -25.76011 -25.25964 -23.49755 -22.68729 -20.90475 -19.50293 -18.87673 -18.37084 -17.50570 -16.58330 -16.15944 -16.06788 -15.90601 -15.32416 -15.28091 -14.99189 -14.76861 -14.26609 -13.98112 -13.77831 -13.62706 -13.05166 -13.04374 -12.84568 -12.55168 -12.46354 -12.17598 -12.15261 -11.89287 -11.64973 -11.55337 -11.13609 -11.10307 -11.08953 -10.97404 -10.75969 -10.64145 -10.42941 -10.32403 -10.14610 -9.69618 -9.69374 -9.31540 -9.12518 -8.69177 -8.48563 -8.43313 -6.06469 -4.18573 0.65379 1.02995 1.13895 2.72178 3.08219 3.23973 3.31283 3.33382 3.47597 3.98012 4.27015 4.33938 4.37678 4.38921 4.49947 4.60730 4.66437 4.86988 5.07203 5.09499 5.18204 5.27435 5.30090 5.36445 5.40339 5.50410 5.61225 5.65034 5.70415 5.98176 6.02444 6.10240 6.23028 6.25726 6.33250 6.47755 6.66279 6.75016 6.85471 6.99152 7.13807 7.27238 7.46054 7.64754 7.94152 8.05674 8.29209 8.79837 9.46907 10.94900 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.027293 B = 0.002371 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.655880 B =11808.974530 C =12238.775644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.081 3.919 3 C -0.164 4.164 4 C -0.502 4.502 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.883 5.883 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 C -0.580 4.580 13 S 2.617 3.383 14 O -0.953 6.953 15 O -0.954 6.954 16 N -1.043 6.043 17 C 0.108 3.892 18 C 0.040 3.960 19 O -0.297 6.297 20 C 0.131 3.869 21 C -0.209 4.209 22 C -0.079 4.079 23 C -0.161 4.161 24 C -0.082 4.082 25 C -0.153 4.153 26 C 0.131 3.869 27 H 0.027 0.973 28 H 0.096 0.904 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.096 0.904 32 H 0.027 0.973 33 H 0.263 0.737 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.095 0.905 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.681 -7.348 22.744 24.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.079 3.921 3 C -0.221 4.221 4 C -0.541 4.541 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 C -0.714 4.714 13 S 2.718 3.282 14 O -0.944 6.944 15 O -0.945 6.945 16 N -0.880 5.880 17 C -0.018 4.018 18 C -0.019 4.019 19 O -0.209 6.209 20 C 0.086 3.914 21 C -0.228 4.228 22 C -0.097 4.097 23 C -0.180 4.180 24 C -0.100 4.100 25 C -0.172 4.172 26 C 0.005 3.995 27 H 0.046 0.954 28 H 0.114 0.886 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.114 0.886 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.134 0.866 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.113 0.887 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.123 -6.406 22.434 23.538 hybrid contribution 0.507 -0.941 -1.249 1.644 sum 3.629 -7.347 21.184 22.714 Atomic orbital electron populations 1.22280 0.96869 1.00672 1.02334 1.17959 0.92866 0.92262 0.89051 1.22281 0.99775 0.97755 1.02336 1.20926 1.31783 1.12092 0.89314 0.92294 1.24949 0.94899 0.94979 0.98969 1.69794 1.36294 1.22521 1.23536 0.86514 0.79181 0.79366 0.82453 1.20628 1.21097 1.19953 1.30590 1.11355 1.12868 1.16604 1.05220 0.74333 0.74446 0.74225 1.93545 1.78323 1.37065 1.85497 1.93542 1.28938 1.86472 1.85501 1.60395 1.31310 1.46751 1.49593 1.22942 1.00461 0.90514 0.87881 1.24534 0.95258 0.90621 0.91454 1.86139 1.56217 1.55434 1.23103 1.19059 0.93102 0.95106 0.84154 1.21361 0.98585 1.04692 0.98161 1.20983 0.98976 0.96664 0.93121 1.21082 0.96845 0.99678 1.00352 1.20978 0.96111 0.98433 0.94523 1.20478 1.01643 1.01210 0.93821 1.22613 0.88376 1.01969 0.86520 0.95443 0.88556 0.94431 0.94408 0.88555 0.95439 0.92697 0.86330 0.86364 0.89444 0.88863 0.86645 0.85081 0.85754 0.86001 0.85443 0.85140 0.88723 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 7.77 37.15 0.29 -3.74 16 2 C 0.08 1.96 0.52 -155.66 -0.08 1.88 16 3 C -0.16 -4.02 7.78 37.16 0.29 -3.73 16 4 C -0.50 -13.16 8.01 -34.44 -0.28 -13.44 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.88 -24.06 9.35 55.43 0.52 -23.54 16 8 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 C -0.58 -11.35 5.12 37.16 0.19 -11.16 16 13 S 2.62 48.66 5.00 -107.50 -0.54 48.13 16 14 O -0.95 -19.90 15.69 -57.54 -0.90 -20.81 16 15 O -0.95 -19.95 15.69 -57.54 -0.90 -20.85 16 16 N -1.04 -14.56 4.10 -125.36 -0.51 -15.07 16 17 C 0.11 1.21 8.53 -8.65 -0.07 1.14 16 18 C 0.04 0.40 4.07 -26.35 -0.11 0.30 16 19 O -0.30 -3.07 10.20 -19.42 -0.20 -3.27 16 20 C 0.13 1.30 6.68 -39.22 -0.26 1.03 16 21 C -0.21 -1.90 9.03 -39.43 -0.36 -2.25 16 22 C -0.08 -0.63 10.04 -39.60 -0.40 -1.03 16 23 C -0.16 -1.18 10.04 -39.56 -0.40 -1.58 16 24 C -0.08 -0.61 10.04 -39.61 -0.40 -1.00 16 25 C -0.15 -1.33 9.99 -39.43 -0.39 -1.72 16 26 C 0.13 1.45 8.54 -8.51 -0.07 1.37 16 27 H 0.03 0.64 5.46 -51.93 -0.28 0.35 16 28 H 0.10 2.55 6.07 -51.93 -0.32 2.23 16 29 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 2.55 6.07 -51.93 -0.32 2.23 16 32 H 0.03 0.64 5.46 -51.93 -0.28 0.35 16 33 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 35 H 0.12 2.11 8.14 -51.93 -0.42 1.69 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.12 1.05 5.89 -51.93 -0.31 0.74 16 39 H 0.13 1.07 5.88 -52.48 -0.31 0.76 16 40 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 42 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 44 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 370.43 15.07 5.58 5.58 Total: -1.00 -32.13 370.43 -10.54 -42.67 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.43 Total: 3.88 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: -2.14 Total: -32.32 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.00 Total: -38.61 kcal Atomic # 8 Polarization: -42.92 SS G_CDS: -2.00 Total: -44.93 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 48.66 SS G_CDS: -0.54 Total: 48.13 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.13 -10.54 -42.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365008292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.021 kcal (2) G-P(sol) polarization free energy of solvation -32.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds