Wall clock time and date at job start Tue Mar 31 2020 22:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47090 * 2 1 4 4 C 1.50701 * 109.47402 * 239.99911 * 2 1 3 5 5 H 1.07999 * 120.00552 * 239.99957 * 4 2 1 6 6 C 1.37885 * 119.99584 * 59.99920 * 4 2 1 7 7 N 1.31508 * 120.00264 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99638 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47606 * 90.00085 * 8 6 4 10 10 H 1.48501 * 109.46831 * 210.00109 * 8 6 4 11 11 H 1.48499 * 109.47350 * 329.99645 * 8 6 4 12 12 C 1.52998 * 109.47274 * 120.00102 * 2 1 3 13 13 S 1.81406 * 109.46954 * 300.00142 * 12 2 1 14 14 O 1.42109 * 110.54076 * 291.62297 * 13 12 2 15 15 O 1.42096 * 110.54434 * 68.37197 * 13 12 2 16 16 N 1.65596 * 104.44851 * 180.02562 * 13 12 2 17 17 C 1.47067 * 136.05368 * 269.62692 * 16 13 12 18 18 C 1.53239 * 88.08551 * 207.20549 * 17 16 13 19 19 O 1.42900 * 114.51022 * 220.46251 * 18 17 16 20 20 C 1.35898 * 116.99647 * 250.61592 * 19 18 17 21 21 C 1.38732 * 120.05921 * 5.45482 * 20 19 18 22 22 C 1.38141 * 119.94886 * 179.74396 * 21 20 19 23 23 C 1.38273 * 120.05339 * 0.50699 * 22 21 20 24 24 C 1.38265 * 120.10951 * 359.76384 * 23 22 21 25 25 C 1.38144 * 120.05503 * 359.97438 * 24 23 22 26 26 C 1.47063 * 136.06167 * 89.99811 * 16 13 12 27 27 H 1.08996 * 109.47312 * 300.00031 * 1 2 3 28 28 H 1.09004 * 109.47188 * 59.99949 * 1 2 3 29 29 H 1.09003 * 109.47214 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46809 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46630 * 300.00005 * 3 2 1 32 32 H 1.08996 * 109.47069 * 59.99819 * 3 2 1 33 33 H 0.96997 * 120.00013 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47032 * 180.02562 * 12 2 1 35 35 H 1.08993 * 109.47151 * 59.99769 * 12 2 1 36 36 H 1.09001 * 113.46866 * 321.93589 * 17 16 13 37 37 H 1.09005 * 113.47022 * 92.37995 * 17 16 13 38 38 H 1.09002 * 114.01824 * 87.71240 * 18 17 16 39 39 H 1.08005 * 120.02781 * 359.97438 * 21 20 19 40 40 H 1.07998 * 119.97803 * 180.27055 * 22 21 20 41 41 H 1.07999 * 119.94601 * 179.74408 * 23 22 21 42 42 H 1.07997 * 119.97071 * 179.97438 * 24 23 22 43 43 H 1.08003 * 120.02773 * 179.97438 * 25 24 23 44 44 H 1.08998 * 113.46894 * 267.62414 * 26 16 13 45 45 H 1.09007 * 113.46554 * 38.06273 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.3429 -2.1616 -4.4119 10 1 2.4866 -0.1413 -5.1122 11 1 3.6293 -1.7582 -3.7122 12 6 2.0400 -0.7213 1.2492 13 16 1.4352 0.1339 2.7304 14 8 2.0479 1.4101 2.8544 15 8 0.0279 -0.0183 2.8544 16 7 2.0541 -0.7400 3.9936 17 6 1.6137 -1.8842 4.8058 18 6 2.4809 -1.3420 5.9470 19 8 3.1929 -2.3427 6.6775 20 6 2.7771 -2.5927 7.9470 21 6 1.6381 -1.9728 8.4399 22 6 1.2145 -2.2326 9.7289 23 6 1.9307 -3.1018 10.5311 24 6 3.0694 -3.7166 10.0441 25 6 3.4940 -3.4641 8.7540 26 6 3.2828 -0.7093 4.8011 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 0.7089 1.1614 -3.4844 34 1 3.1299 -0.7208 1.2494 35 1 1.6766 -1.7488 1.2492 36 1 0.5471 -1.8725 5.0300 37 1 1.9538 -2.8459 4.4215 38 1 1.9719 -0.6215 6.5872 39 1 1.0808 -1.2904 7.8152 40 1 0.3255 -1.7537 10.1116 41 1 1.6003 -3.3005 11.5400 42 1 3.6273 -4.3947 10.6728 43 1 4.3837 -3.9443 8.3742 44 1 4.0719 -1.3548 4.4155 45 1 3.6325 0.2994 5.0212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365008292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:11 Heat of formation + Delta-G solvation = -55.506616 kcal Electronic energy + Delta-G solvation = -27360.446044 eV Core-core repulsion = 23471.589431 eV Total energy + Delta-G solvation = -3888.856613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.55721 -39.83561 -38.18349 -38.16743 -37.61519 -36.97536 -33.65944 -31.92711 -30.88983 -29.23873 -28.12680 -27.72801 -27.27508 -27.14976 -24.22224 -23.32171 -21.72420 -21.31279 -19.75943 -19.49049 -18.81606 -17.93924 -17.42023 -17.26741 -16.84259 -16.73732 -16.55571 -16.22614 -15.80618 -15.16347 -15.04050 -14.84362 -14.65419 -14.52502 -14.46068 -14.27374 -13.89735 -13.60954 -13.36552 -13.20224 -13.14347 -12.93659 -12.91855 -12.81341 -12.58572 -12.55455 -12.41718 -12.22711 -12.16449 -12.00506 -11.72115 -11.60572 -11.45761 -11.41607 -10.71870 -10.44116 -10.12058 -9.90161 -9.13304 -8.05498 -6.24243 -0.79382 0.43977 0.52362 1.42535 1.44343 1.52951 1.55851 2.23975 2.42238 2.83337 2.85794 2.97251 3.16951 3.28512 3.47447 3.76699 3.97150 4.00961 4.03021 4.07836 4.33368 4.41834 4.48892 4.49617 4.55866 4.56388 4.57655 4.75961 4.78022 4.81909 4.83228 4.88323 4.94605 5.06539 5.13740 5.25682 5.35373 5.41968 5.47879 5.54028 5.62113 5.65932 5.89828 5.94322 6.08196 6.31154 6.45052 6.80113 7.43986 8.94401 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.027293 B = 0.002371 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.655880 B =11808.974530 C =12238.775644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.067 3.933 3 C -0.160 4.160 4 C -0.517 4.517 5 H 0.062 0.938 6 C 0.017 3.983 7 N -0.907 5.907 8 Si 0.956 3.044 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.268 1.268 12 C -0.586 4.586 13 S 2.643 3.357 14 O -0.980 6.980 15 O -0.981 6.981 16 N -1.047 6.047 17 C 0.102 3.898 18 C 0.052 3.948 19 O -0.302 6.302 20 C 0.108 3.892 21 C -0.222 4.222 22 C -0.089 4.089 23 C -0.164 4.164 24 C -0.085 4.085 25 C -0.165 4.165 26 C 0.124 3.876 27 H 0.032 0.968 28 H 0.072 0.928 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.032 0.968 33 H 0.262 0.738 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.125 0.875 39 H 0.135 0.865 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.152 0.848 43 H 0.138 0.862 44 H 0.114 0.886 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.612 -8.980 24.594 26.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.065 3.935 3 C -0.217 4.217 4 C -0.556 4.556 5 H 0.080 0.920 6 C -0.183 4.183 7 N -0.546 5.546 8 Si 0.782 3.218 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.192 1.192 12 C -0.719 4.719 13 S 2.743 3.257 14 O -0.971 6.971 15 O -0.972 6.972 16 N -0.887 5.887 17 C -0.023 4.023 18 C -0.007 4.007 19 O -0.214 6.214 20 C 0.063 3.937 21 C -0.241 4.241 22 C -0.107 4.107 23 C -0.182 4.182 24 C -0.102 4.102 25 C -0.183 4.183 26 C 0.000 4.000 27 H 0.051 0.949 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.109 0.891 37 H 0.127 0.873 38 H 0.142 0.858 39 H 0.152 0.848 40 H 0.159 0.841 41 H 0.162 0.838 42 H 0.170 0.830 43 H 0.156 0.844 44 H 0.131 0.869 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.058 -8.046 24.280 25.898 hybrid contribution 0.234 -0.493 -1.663 1.750 sum 4.293 -8.539 22.617 24.554 Atomic orbital electron populations 1.22208 0.97658 1.00502 1.01400 1.17954 0.92425 0.92243 0.90854 1.22208 0.99872 0.98273 1.01396 1.21266 1.31727 1.12275 0.90356 0.91987 1.25695 0.95207 0.95673 1.01715 1.69934 1.37132 1.23595 1.23919 0.85591 0.78841 0.78244 0.79151 1.20356 1.21175 1.19222 1.30543 1.12486 1.13356 1.15510 1.04068 0.73477 0.73972 0.74231 1.93502 1.78652 1.38925 1.86001 1.93498 1.30773 1.86892 1.86013 1.59890 1.32973 1.47545 1.48283 1.23234 1.01135 0.90248 0.87725 1.24308 0.94592 0.90584 0.91191 1.86107 1.56279 1.55483 1.23567 1.19301 0.94003 0.96256 0.84139 1.21516 0.98644 1.05015 0.98895 1.21284 0.99682 0.96862 0.92851 1.21436 0.96526 0.98908 1.01293 1.21321 0.96225 0.98438 0.94250 1.20727 1.01988 1.01197 0.94400 1.22914 0.87845 1.03000 0.86265 0.94893 0.90931 0.94139 0.94057 0.90941 0.94887 0.92856 0.84656 0.84764 0.89123 0.87261 0.85788 0.84763 0.84104 0.83787 0.83030 0.84442 0.86852 0.88449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.96 7.77 71.98 0.56 -7.40 16 2 C 0.07 3.26 0.52 -52.93 -0.03 3.24 16 3 C -0.16 -7.94 7.78 71.98 0.56 -7.38 16 4 C -0.52 -26.99 8.01 25.60 0.21 -26.78 16 5 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 6 C 0.02 0.88 5.15 84.66 0.44 1.32 16 7 N -0.91 -50.26 9.35 21.45 0.20 -50.06 16 8 Si 0.96 42.20 29.54 68.60 2.03 44.22 16 9 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 10 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 12 C -0.59 -22.31 5.12 71.98 0.37 -21.94 16 13 S 2.64 96.18 5.00 -56.49 -0.28 95.90 16 14 O -0.98 -40.46 15.69 -127.65 -2.00 -42.46 16 15 O -0.98 -40.65 15.69 -127.65 -2.00 -42.65 16 16 N -1.05 -27.54 4.10 -551.00 -2.26 -29.80 16 17 C 0.10 2.09 8.53 83.09 0.71 2.80 16 18 C 0.05 0.96 4.07 30.84 0.13 1.09 16 19 O -0.30 -5.75 10.20 -92.40 -0.94 -6.70 16 20 C 0.11 1.98 6.68 22.51 0.15 2.13 16 21 C -0.22 -3.72 9.03 22.36 0.20 -3.52 16 22 C -0.09 -1.24 10.04 22.25 0.22 -1.02 16 23 C -0.16 -1.99 10.04 22.28 0.22 -1.76 16 24 C -0.08 -1.04 10.04 22.25 0.22 -0.82 16 25 C -0.16 -2.59 9.99 22.37 0.22 -2.37 16 26 C 0.12 2.50 8.54 83.18 0.71 3.21 16 27 H 0.03 1.56 5.46 -2.39 -0.01 1.54 16 28 H 0.07 3.94 6.07 -2.39 -0.01 3.93 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.07 3.93 6.07 -2.39 -0.01 3.92 16 32 H 0.03 1.56 5.46 -2.39 -0.01 1.54 16 33 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 34 H 0.14 4.61 8.14 -2.39 -0.02 4.59 16 35 H 0.13 4.59 8.14 -2.39 -0.02 4.58 16 36 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 38 H 0.12 2.06 5.89 -2.39 -0.01 2.05 16 39 H 0.13 2.03 5.88 -2.91 -0.02 2.02 16 40 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 41 H 0.14 1.05 8.06 -2.91 -0.02 1.03 16 42 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 43 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 44 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.10 1.86 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -68.51 370.43 0.62 -67.89 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.99 Total: 22.86 kcal Atomic # 6 Polarization: -64.10 SS G_CDS: 4.89 Total: -59.20 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -2.06 Total: -79.86 kcal Atomic # 8 Polarization: -86.86 SS G_CDS: -4.95 Total: -91.81 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 96.18 SS G_CDS: -0.28 Total: 95.90 kcal Total: -68.51 0.62 -67.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365008292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.385 kcal (2) G-P(sol) polarization free energy of solvation -68.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds