Wall clock time and date at job start Tue Mar 31 2020 23:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.99837 * 2 1 4 4 C 1.54317 * 109.98731 * 238.97045 * 2 1 3 5 5 H 1.08994 * 111.07388 * 144.56257 * 4 2 1 6 6 C 1.53002 * 110.58959 * 21.30481 * 4 2 1 7 7 O 1.42897 * 109.47073 * 180.19158 * 6 4 2 8 8 C 1.55158 * 102.86328 * 263.04604 * 4 2 1 9 9 C 1.54912 * 101.58283 * 324.30492 * 8 4 2 10 10 N 1.47020 * 109.88160 * 121.09300 * 2 1 3 11 11 S 1.65605 * 125.65080 * 300.51793 * 10 2 1 12 12 O 1.42096 * 104.27940 * 153.64384 * 11 10 2 13 13 O 1.42103 * 104.27614 * 25.78206 * 11 10 2 14 14 C 1.81402 * 104.44703 * 269.71694 * 11 10 2 15 15 C 1.50700 * 109.47325 * 179.97438 * 14 11 10 16 16 C 1.38637 * 119.74652 * 89.99414 * 15 14 11 17 17 C 1.37617 * 120.24806 * 179.97438 * 16 15 14 18 18 C 1.40712 * 119.74330 * 0.02562 * 17 16 15 19 19 C 1.41401 * 120.24646 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99744 * 204.43909 * 19 18 17 21 21 C 1.39939 * 119.99818 * 24.71062 * 19 18 17 22 22 N 1.30827 * 120.00268 * 17.43771 * 21 19 18 23 23 Si 1.86802 * 120.00170 * 197.44397 * 21 19 18 24 24 H 1.48501 * 109.46960 * 59.99539 * 23 21 19 25 25 H 1.48498 * 109.47384 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46677 * 299.99840 * 23 21 19 27 27 C 1.40725 * 119.51267 * 0.25646 * 18 17 16 28 28 C 1.37619 * 119.74031 * 359.48675 * 27 18 17 29 29 H 1.08996 * 109.47426 * 300.35604 * 1 2 3 30 30 H 1.09001 * 109.46956 * 60.36078 * 1 2 3 31 31 H 1.09003 * 109.47063 * 180.35885 * 1 2 3 32 32 H 1.08994 * 109.47278 * 300.19327 * 6 4 2 33 33 H 1.09007 * 109.46899 * 60.19437 * 6 4 2 34 34 H 0.96695 * 114.00201 * 180.02562 * 7 6 4 35 35 H 1.08990 * 111.00713 * 206.22962 * 8 4 2 36 36 H 1.09008 * 111.03449 * 82.39119 * 8 4 2 37 37 H 1.08999 * 110.36424 * 278.17161 * 9 8 4 38 38 H 1.09003 * 110.46170 * 155.89169 * 9 8 4 39 39 H 1.08997 * 109.47449 * 59.99507 * 14 11 10 40 40 H 1.09009 * 109.47116 * 299.99825 * 14 11 10 41 41 H 1.08004 * 119.87885 * 359.96589 * 16 15 14 42 42 H 1.07998 * 120.12820 * 180.02562 * 17 16 15 43 43 H 0.96990 * 120.00471 * 180.02562 * 22 21 19 44 44 H 1.07997 * 120.12754 * 179.74486 * 27 18 17 45 45 H 1.08004 * 119.87264 * 180.23021 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0575 -0.7476 -1.2427 5 1 2.9702 -0.2861 -1.6196 6 6 0.9874 -0.7974 -2.3351 7 8 1.4986 -1.4975 -3.4711 8 6 2.3477 -2.1693 -0.6932 9 6 2.8524 -1.8530 0.7368 10 7 2.0300 -0.7140 1.1839 11 16 1.7157 -0.3101 2.7589 12 8 1.8383 -1.5363 3.4664 13 8 0.4761 0.3824 2.7023 14 6 3.0577 0.8233 3.2120 15 6 2.8797 1.2668 4.6412 16 6 3.4609 0.5358 5.6657 17 6 3.3055 0.9318 6.9745 18 6 2.5527 2.0831 7.2708 19 6 2.3856 2.4993 8.6118 20 1 1.5333 3.1025 8.8878 21 6 3.3277 2.1344 9.5801 22 7 4.5124 1.7161 9.2154 23 14 2.8936 2.2445 11.3937 24 1 1.7289 1.3681 11.6779 25 1 4.0545 1.8039 12.2082 26 1 2.5521 3.6484 11.7365 27 6 1.9623 2.8139 6.2231 28 6 2.1355 2.4023 4.9214 29 1 -0.3634 0.5193 0.8867 30 1 -0.3633 0.5082 -0.8932 31 1 -0.3633 -1.0277 0.0064 32 1 0.1055 -1.3141 -1.9565 33 1 0.7171 0.2179 -2.6254 34 1 0.8725 -1.5674 -4.2046 35 1 3.1213 -2.6645 -1.2799 36 1 1.4386 -2.7701 -0.6628 37 1 3.9060 -1.5745 0.7143 38 1 2.7013 -2.7105 1.3926 39 1 3.0351 1.6937 2.5563 40 1 4.0153 0.3133 3.1060 41 1 4.0378 -0.3479 5.4360 42 1 3.7595 0.3611 7.7711 43 1 5.1652 1.4628 9.8865 44 1 1.3790 3.6967 6.4395 45 1 1.6864 2.9637 4.1154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413361501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:27 Heat of formation + Delta-G solvation = -106.202101 kcal Electronic energy + Delta-G solvation = -27492.559839 eV Core-core repulsion = 23601.504905 eV Total energy + Delta-G solvation = -3891.054934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.54352 -37.78547 -36.70229 -36.66196 -35.45259 -34.17427 -32.01549 -31.50171 -31.15006 -29.44562 -27.85758 -26.63202 -24.83824 -24.22067 -22.28353 -21.16969 -20.35980 -19.81853 -18.53775 -17.93877 -17.45188 -17.38501 -16.30663 -15.81424 -15.55624 -15.28101 -14.91661 -14.51919 -14.25703 -14.00467 -13.91140 -13.75082 -13.39923 -12.89153 -12.86183 -12.68259 -12.47981 -12.17006 -12.08163 -11.98912 -11.76454 -11.60804 -11.57575 -11.52101 -11.18283 -11.15489 -11.11152 -10.84510 -10.79143 -10.78238 -10.64076 -10.24426 -10.16346 -9.83361 -9.53482 -9.26912 -8.96988 -7.62110 -7.45145 -6.92707 -4.50318 0.56403 2.63582 2.95200 2.96930 2.99965 3.01935 3.11783 3.77161 3.81991 4.22129 4.29421 4.37045 4.47593 4.56980 4.76868 4.99017 5.08955 5.09791 5.18424 5.22541 5.26209 5.30849 5.44622 5.49527 5.53755 5.62911 5.69988 5.80203 5.91346 6.04753 6.06357 6.18257 6.19730 6.25350 6.45073 6.49056 6.82743 6.91048 7.09412 7.18043 7.28796 7.45314 7.66015 7.89404 7.90091 8.12150 8.47168 8.71614 8.79622 10.00532 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.035361 B = 0.002419 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.642181 B =11573.308808 C =11853.181265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.158 3.842 3 H 0.075 0.925 4 C -0.095 4.095 5 H 0.090 0.910 6 C 0.083 3.917 7 O -0.575 6.575 8 C -0.115 4.115 9 C 0.112 3.888 10 N -1.016 6.016 11 S 2.590 3.410 12 O -0.959 6.959 13 O -0.956 6.956 14 C -0.520 4.520 15 C -0.237 4.237 16 C -0.081 4.081 17 C -0.166 4.166 18 C 0.117 3.883 19 C -0.448 4.448 20 H 0.083 0.917 21 C 0.073 3.927 22 N -0.782 5.782 23 Si 0.913 3.087 24 H -0.261 1.261 25 H -0.277 1.277 26 H -0.264 1.264 27 C -0.226 4.226 28 C -0.067 4.067 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.379 0.621 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.095 0.905 42 H 0.123 0.877 43 H 0.285 0.715 44 H 0.099 0.901 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.443 -4.445 -19.022 19.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.052 3.948 3 H 0.093 0.907 4 C -0.115 4.115 5 H 0.109 0.891 6 C 0.005 3.995 7 O -0.380 6.380 8 C -0.154 4.154 9 C -0.013 4.013 10 N -0.852 5.852 11 S 2.692 3.308 12 O -0.949 6.949 13 O -0.947 6.947 14 C -0.651 4.651 15 C -0.243 4.243 16 C -0.101 4.101 17 C -0.186 4.186 18 C 0.114 3.886 19 C -0.477 4.477 20 H 0.101 0.899 21 C -0.146 4.146 22 N -0.406 5.406 23 Si 0.737 3.263 24 H -0.186 1.186 25 H -0.202 1.202 26 H -0.188 1.188 27 C -0.246 4.246 28 C -0.087 4.087 29 H 0.117 0.883 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.225 0.775 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.113 0.887 42 H 0.141 0.859 43 H 0.096 0.904 44 H 0.117 0.883 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.440 -4.920 -18.031 18.848 hybrid contribution 0.114 0.504 0.228 0.565 sum -2.325 -4.416 -17.802 18.489 Atomic orbital electron populations 1.22688 0.94766 1.03039 1.04522 1.21111 0.94485 0.95164 0.84054 0.90713 1.22215 0.98937 0.97097 0.93253 0.89149 1.22321 0.95727 0.95474 0.85941 1.86454 1.45139 1.79085 1.27339 1.22729 1.02041 0.96024 0.94635 1.22035 0.94328 0.89019 0.95962 1.59104 1.64755 1.39236 1.22073 1.06385 0.77371 0.75923 0.71100 1.93518 1.87583 1.43055 1.70772 1.93463 1.40334 1.76231 1.84633 1.28971 1.16948 1.14492 1.04641 1.18112 1.13595 1.03316 0.89257 1.20614 0.98284 0.97770 0.93388 1.21325 1.04468 0.98067 0.94717 1.17741 0.88633 0.89496 0.92727 1.19716 1.07433 1.28181 0.92382 0.89900 1.26019 0.93891 0.92502 1.02217 1.69804 1.03468 1.30228 1.37079 0.86274 0.79285 0.79976 0.80740 1.18551 1.20162 1.18805 1.20984 1.09428 1.02058 0.92103 1.20462 0.97055 0.94900 0.96281 0.88337 0.91813 0.92278 0.92724 0.93284 0.77460 0.89886 0.90767 0.91678 0.89840 0.86289 0.86211 0.88723 0.85915 0.90393 0.88302 0.88677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.15 7.80 37.16 0.29 -1.86 16 2 C 0.16 1.73 3.62 -66.95 -0.24 1.48 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 4 C -0.10 -0.86 3.17 -88.79 -0.28 -1.14 16 5 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 6 C 0.08 0.63 5.18 37.16 0.19 0.82 16 7 O -0.57 -4.44 13.51 -35.23 -0.48 -4.92 16 8 C -0.12 -1.08 6.38 -24.58 -0.16 -1.24 16 9 C 0.11 1.24 7.08 -2.52 -0.02 1.22 16 10 N -1.02 -13.30 3.34 -104.41 -0.35 -13.65 16 11 S 2.59 44.77 5.62 -107.50 -0.60 44.17 16 12 O -0.96 -19.69 17.28 -57.54 -0.99 -20.68 16 13 O -0.96 -18.47 14.87 -57.54 -0.86 -19.33 16 14 C -0.52 -8.73 6.29 36.01 0.23 -8.51 16 15 C -0.24 -5.20 5.16 -104.33 -0.54 -5.74 16 16 C -0.08 -1.91 9.67 -39.66 -0.38 -2.30 16 17 C -0.17 -4.31 8.70 -38.87 -0.34 -4.65 16 18 C 0.12 3.10 5.57 -106.82 -0.60 2.51 16 19 C -0.45 -11.57 9.05 -37.74 -0.34 -11.91 16 20 H 0.08 2.03 7.91 -52.48 -0.41 1.62 16 21 C 0.07 1.79 5.15 -17.34 -0.09 1.70 16 22 N -0.78 -19.53 10.95 55.55 0.61 -18.92 16 23 Si 0.91 18.06 29.59 -169.99 -5.03 13.03 16 24 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 25 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 26 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 27 C -0.23 -5.51 9.80 -38.87 -0.38 -5.89 16 28 C -0.07 -1.52 9.67 -39.66 -0.38 -1.90 16 29 H 0.10 1.38 5.55 -51.93 -0.29 1.09 16 30 H 0.06 0.53 6.70 -51.93 -0.35 0.19 16 31 H 0.06 0.66 7.54 -51.93 -0.39 0.27 16 32 H 0.05 0.40 6.59 -51.93 -0.34 0.06 16 33 H 0.05 0.31 7.61 -51.93 -0.39 -0.08 16 34 H 0.38 1.27 9.12 45.56 0.42 1.68 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.71 8.02 -51.92 -0.42 0.29 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.99 7.66 -51.93 -0.40 0.59 16 39 H 0.12 1.69 8.08 -51.93 -0.42 1.27 16 40 H 0.12 1.76 8.08 -51.92 -0.42 1.34 16 41 H 0.09 2.03 8.06 -52.48 -0.42 1.60 16 42 H 0.12 3.24 6.16 -52.49 -0.32 2.92 16 43 H 0.29 6.44 8.30 -40.82 -0.34 6.11 16 44 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 45 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 LS Contribution 372.83 15.07 5.62 5.62 Total: -1.00 -32.21 372.83 -10.96 -43.17 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -5.84 Total: 8.92 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: -3.04 Total: -37.41 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: 0.26 Total: -32.57 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: -2.33 Total: -44.92 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Atomic # 16 Polarization: 44.77 SS G_CDS: -0.60 Total: 44.17 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.21 -10.96 -43.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413361501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.037 kcal (2) G-P(sol) polarization free energy of solvation -32.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds