Wall clock time and date at job start Tue Mar 31 2020 23:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.99837 * 2 1 4 4 C 1.54317 * 109.98731 * 238.97045 * 2 1 3 5 5 H 1.08994 * 111.07388 * 144.56257 * 4 2 1 6 6 C 1.53002 * 110.58959 * 21.30481 * 4 2 1 7 7 O 1.42897 * 109.47073 * 180.19158 * 6 4 2 8 8 C 1.55158 * 102.86328 * 263.04604 * 4 2 1 9 9 C 1.54912 * 101.58283 * 324.30492 * 8 4 2 10 10 N 1.47020 * 109.88160 * 121.09300 * 2 1 3 11 11 S 1.65605 * 125.65080 * 300.51793 * 10 2 1 12 12 O 1.42096 * 104.27940 * 153.64384 * 11 10 2 13 13 O 1.42103 * 104.27614 * 25.78206 * 11 10 2 14 14 C 1.81402 * 104.44703 * 269.71694 * 11 10 2 15 15 C 1.50700 * 109.47325 * 179.97438 * 14 11 10 16 16 C 1.38637 * 119.74652 * 89.99414 * 15 14 11 17 17 C 1.37617 * 120.24806 * 179.97438 * 16 15 14 18 18 C 1.40712 * 119.74330 * 0.02562 * 17 16 15 19 19 C 1.41401 * 120.24646 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99744 * 204.43909 * 19 18 17 21 21 C 1.39939 * 119.99818 * 24.71062 * 19 18 17 22 22 N 1.30827 * 120.00268 * 17.43771 * 21 19 18 23 23 Si 1.86802 * 120.00170 * 197.44397 * 21 19 18 24 24 H 1.48501 * 109.46960 * 59.99539 * 23 21 19 25 25 H 1.48498 * 109.47384 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46677 * 299.99840 * 23 21 19 27 27 C 1.40725 * 119.51267 * 0.25646 * 18 17 16 28 28 C 1.37619 * 119.74031 * 359.48675 * 27 18 17 29 29 H 1.08996 * 109.47426 * 300.35604 * 1 2 3 30 30 H 1.09001 * 109.46956 * 60.36078 * 1 2 3 31 31 H 1.09003 * 109.47063 * 180.35885 * 1 2 3 32 32 H 1.08994 * 109.47278 * 300.19327 * 6 4 2 33 33 H 1.09007 * 109.46899 * 60.19437 * 6 4 2 34 34 H 0.96695 * 114.00201 * 180.02562 * 7 6 4 35 35 H 1.08990 * 111.00713 * 206.22962 * 8 4 2 36 36 H 1.09008 * 111.03449 * 82.39119 * 8 4 2 37 37 H 1.08999 * 110.36424 * 278.17161 * 9 8 4 38 38 H 1.09003 * 110.46170 * 155.89169 * 9 8 4 39 39 H 1.08997 * 109.47449 * 59.99507 * 14 11 10 40 40 H 1.09009 * 109.47116 * 299.99825 * 14 11 10 41 41 H 1.08004 * 119.87885 * 359.96589 * 16 15 14 42 42 H 1.07998 * 120.12820 * 180.02562 * 17 16 15 43 43 H 0.96990 * 120.00471 * 180.02562 * 22 21 19 44 44 H 1.07997 * 120.12754 * 179.74486 * 27 18 17 45 45 H 1.08004 * 119.87264 * 180.23021 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0575 -0.7476 -1.2427 5 1 2.9702 -0.2861 -1.6196 6 6 0.9874 -0.7974 -2.3351 7 8 1.4986 -1.4975 -3.4711 8 6 2.3477 -2.1693 -0.6932 9 6 2.8524 -1.8530 0.7368 10 7 2.0300 -0.7140 1.1839 11 16 1.7157 -0.3101 2.7589 12 8 1.8383 -1.5363 3.4664 13 8 0.4761 0.3824 2.7023 14 6 3.0577 0.8233 3.2120 15 6 2.8797 1.2668 4.6412 16 6 3.4609 0.5358 5.6657 17 6 3.3055 0.9318 6.9745 18 6 2.5527 2.0831 7.2708 19 6 2.3856 2.4993 8.6118 20 1 1.5333 3.1025 8.8878 21 6 3.3277 2.1344 9.5801 22 7 4.5124 1.7161 9.2154 23 14 2.8936 2.2445 11.3937 24 1 1.7289 1.3681 11.6779 25 1 4.0545 1.8039 12.2082 26 1 2.5521 3.6484 11.7365 27 6 1.9623 2.8139 6.2231 28 6 2.1355 2.4023 4.9214 29 1 -0.3634 0.5193 0.8867 30 1 -0.3633 0.5082 -0.8932 31 1 -0.3633 -1.0277 0.0064 32 1 0.1055 -1.3141 -1.9565 33 1 0.7171 0.2179 -2.6254 34 1 0.8725 -1.5674 -4.2046 35 1 3.1213 -2.6645 -1.2799 36 1 1.4386 -2.7701 -0.6628 37 1 3.9060 -1.5745 0.7143 38 1 2.7013 -2.7105 1.3926 39 1 3.0351 1.6937 2.5563 40 1 4.0153 0.3133 3.1060 41 1 4.0378 -0.3479 5.4360 42 1 3.7595 0.3611 7.7711 43 1 5.1652 1.4628 9.8865 44 1 1.3790 3.6967 6.4395 45 1 1.6864 2.9637 4.1154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413361501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:26 Heat of formation + Delta-G solvation = -129.001853 kcal Electronic energy + Delta-G solvation = -27493.548511 eV Core-core repulsion = 23601.504905 eV Total energy + Delta-G solvation = -3892.043606 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.33844 -39.60526 -38.16017 -37.28467 -36.92928 -35.96812 -33.23431 -32.85047 -31.98500 -31.30685 -29.56099 -27.43950 -25.97609 -25.56289 -23.20647 -23.02685 -22.10260 -20.67180 -19.73078 -19.31615 -18.78618 -18.26377 -17.58755 -17.21139 -16.94488 -16.51332 -16.12278 -15.72188 -15.64356 -15.52792 -15.16390 -14.75826 -14.42732 -14.21743 -13.93271 -13.85827 -13.68614 -13.66020 -13.50581 -13.28427 -13.24432 -13.10232 -12.95098 -12.80946 -12.78904 -12.58880 -12.35094 -12.15060 -11.86648 -11.83649 -11.61972 -11.51311 -11.44295 -11.36975 -11.04460 -10.71434 -10.01895 -9.49885 -9.28274 -8.72935 -6.42603 -0.80639 0.86052 1.04254 1.36751 1.48061 1.51816 1.76663 2.16862 2.61799 2.91345 3.02497 3.30601 3.55401 3.63086 3.73064 3.80546 3.99575 4.10107 4.24639 4.38383 4.40571 4.42404 4.47858 4.50289 4.57610 4.64504 4.68700 4.77456 4.84156 4.95004 4.96567 5.05411 5.06560 5.11009 5.22913 5.28792 5.32048 5.33009 5.51327 5.58417 5.59011 5.81017 5.99950 6.01945 6.25626 6.58185 6.82747 6.90594 6.97261 8.23392 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.035361 B = 0.002419 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.642181 B =11573.308808 C =11853.181265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.149 3.851 3 H 0.093 0.907 4 C -0.089 4.089 5 H 0.101 0.899 6 C 0.084 3.916 7 O -0.591 6.591 8 C -0.111 4.111 9 C 0.102 3.898 10 N -1.012 6.012 11 S 2.612 3.388 12 O -0.997 6.997 13 O -0.979 6.979 14 C -0.524 4.524 15 C -0.234 4.234 16 C -0.093 4.093 17 C -0.194 4.194 18 C 0.084 3.916 19 C -0.489 4.489 20 H 0.083 0.917 21 C 0.033 3.967 22 N -0.815 5.815 23 Si 0.986 3.014 24 H -0.261 1.261 25 H -0.265 1.265 26 H -0.256 1.256 27 C -0.245 4.245 28 C -0.075 4.075 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.397 0.603 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.153 0.847 40 H 0.146 0.854 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.292 0.708 44 H 0.107 0.893 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.236 -4.343 -21.701 22.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.043 3.957 3 H 0.111 0.889 4 C -0.109 4.109 5 H 0.119 0.881 6 C 0.006 3.994 7 O -0.399 6.399 8 C -0.150 4.150 9 C -0.023 4.023 10 N -0.850 5.850 11 S 2.714 3.286 12 O -0.987 6.987 13 O -0.969 6.969 14 C -0.655 4.655 15 C -0.238 4.238 16 C -0.112 4.112 17 C -0.214 4.214 18 C 0.081 3.919 19 C -0.518 4.518 20 H 0.101 0.899 21 C -0.183 4.183 22 N -0.440 5.440 23 Si 0.806 3.194 24 H -0.186 1.186 25 H -0.189 1.189 26 H -0.180 1.180 27 C -0.265 4.265 28 C -0.094 4.094 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.247 0.753 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.171 0.829 40 H 0.164 0.836 41 H 0.130 0.870 42 H 0.125 0.875 43 H 0.103 0.897 44 H 0.125 0.875 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.237 -4.798 -20.697 21.364 hybrid contribution 0.039 0.390 0.719 0.819 sum -2.198 -4.408 -19.979 20.577 Atomic orbital electron populations 1.22689 0.95221 1.02724 1.04539 1.21416 0.94267 0.96186 0.83787 0.88928 1.22198 0.99777 0.96235 0.92731 0.88101 1.22285 0.95007 0.96419 0.85686 1.86396 1.46332 1.79153 1.28019 1.22718 1.02222 0.96524 0.93521 1.22306 0.95331 0.87906 0.96712 1.58677 1.65181 1.40004 1.21149 1.05131 0.76732 0.74999 0.71758 1.93478 1.87972 1.44682 1.72607 1.93455 1.41466 1.76595 1.85432 1.29054 1.18382 1.16234 1.01842 1.18529 1.11422 1.02243 0.91595 1.20922 0.98600 0.98579 0.93146 1.21334 1.05904 0.98626 0.95542 1.18100 0.89692 0.90234 0.93826 1.19953 1.08467 1.30116 0.93236 0.89932 1.26873 0.93316 0.91614 1.06517 1.69850 1.04348 1.31038 1.38752 0.85185 0.79095 0.80155 0.74928 1.18586 1.18928 1.17983 1.21242 1.09871 1.02508 0.92852 1.20864 0.96825 0.95370 0.96377 0.91262 0.88845 0.92765 0.92730 0.91724 0.75322 0.88441 0.91308 0.89409 0.91172 0.82858 0.83641 0.87046 0.87509 0.89693 0.87479 0.85555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.89 7.80 71.98 0.56 -3.32 16 2 C 0.15 2.77 3.62 45.34 0.16 2.94 16 3 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 4 C -0.09 -1.29 3.17 -9.61 -0.03 -1.32 16 5 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 6 C 0.08 0.97 5.18 71.98 0.37 1.34 16 7 O -0.59 -7.12 13.51 -148.98 -2.01 -9.13 16 8 C -0.11 -1.76 6.38 31.99 0.20 -1.55 16 9 C 0.10 2.01 7.08 86.86 0.61 2.62 16 10 N -1.01 -24.04 3.34 -484.26 -1.62 -25.66 16 11 S 2.61 86.51 5.62 -56.49 -0.32 86.19 16 12 O -1.00 -40.62 17.28 -127.65 -2.21 -42.82 16 13 O -0.98 -36.88 14.87 -127.65 -1.90 -38.77 16 14 C -0.52 -16.23 6.29 71.24 0.45 -15.78 16 15 C -0.23 -10.03 5.16 -19.68 -0.10 -10.13 16 16 C -0.09 -4.46 9.67 22.22 0.21 -4.25 16 17 C -0.19 -10.55 8.70 22.73 0.20 -10.35 16 18 C 0.08 4.66 5.57 -21.29 -0.12 4.54 16 19 C -0.49 -26.44 9.05 23.46 0.21 -26.23 16 20 H 0.08 4.25 7.91 -2.91 -0.02 4.23 16 21 C 0.03 1.67 5.15 85.25 0.44 2.11 16 22 N -0.81 -42.30 10.95 21.83 0.24 -42.06 16 23 Si 0.99 37.82 29.59 68.60 2.03 39.85 16 24 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 25 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 26 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 27 C -0.25 -12.26 9.80 22.73 0.22 -12.04 16 28 C -0.08 -3.34 9.67 22.22 0.21 -3.13 16 29 H 0.07 1.85 5.55 -2.39 -0.01 1.84 16 30 H 0.09 1.27 6.70 -2.39 -0.02 1.26 16 31 H 0.05 1.12 7.54 -2.39 -0.02 1.10 16 32 H 0.05 0.63 6.59 -2.39 -0.02 0.62 16 33 H 0.06 0.56 7.61 -2.38 -0.02 0.54 16 34 H 0.40 1.40 9.12 -74.06 -0.68 0.72 16 35 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.17 8.02 -2.38 -0.02 1.15 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.58 7.66 -2.39 -0.02 1.56 16 39 H 0.15 3.71 8.08 -2.39 -0.02 3.69 16 40 H 0.15 3.79 8.08 -2.39 -0.02 3.77 16 41 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 42 H 0.11 5.99 6.16 -2.91 -0.02 5.97 16 43 H 0.29 13.62 8.30 -92.72 -0.77 12.85 16 44 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 45 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -72.88 372.83 -1.84 -74.72 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: 0.33 Total: 32.24 kcal Atomic # 6 Polarization: -78.16 SS G_CDS: 3.62 Total: -74.55 kcal Atomic # 7 Polarization: -66.34 SS G_CDS: -1.38 Total: -67.72 kcal Atomic # 8 Polarization: -84.61 SS G_CDS: -6.12 Total: -90.73 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.85 kcal Atomic # 16 Polarization: 86.51 SS G_CDS: -0.32 Total: 86.19 kcal Total: -72.88 -1.84 -74.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413361501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.281 kcal (2) G-P(sol) polarization free energy of solvation -72.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds