Wall clock time and date at job start Tue Mar 31 2020 23:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 110.00071 * 2 1 4 4 C 1.54330 * 109.99299 * 238.96553 * 2 1 3 5 5 H 1.09002 * 110.67043 * 337.04779 * 4 2 1 6 6 C 1.52997 * 110.85290 * 100.19641 * 4 2 1 7 7 O 1.42899 * 109.47465 * 180.14715 * 6 4 2 8 8 C 1.55154 * 103.02285 * 218.66596 * 4 2 1 9 9 C 1.54906 * 101.58221 * 35.30514 * 8 4 2 10 10 N 1.47022 * 109.88335 * 121.09677 * 2 1 3 11 11 S 1.65596 * 125.64867 * 298.39543 * 10 2 1 12 12 O 1.42106 * 104.27801 * 153.64516 * 11 10 2 13 13 O 1.42102 * 104.27789 * 25.78791 * 11 10 2 14 14 C 1.81393 * 104.45041 * 269.71345 * 11 10 2 15 15 C 1.50705 * 109.47363 * 179.97438 * 14 11 10 16 16 C 1.38638 * 119.74967 * 90.00141 * 15 14 11 17 17 C 1.37613 * 120.24807 * 179.97438 * 16 15 14 18 18 C 1.40709 * 119.74697 * 0.02562 * 17 16 15 19 19 C 1.41399 * 120.24578 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00010 * 335.72332 * 19 18 17 21 21 C 1.39946 * 119.99947 * 155.72470 * 19 18 17 22 22 N 1.30821 * 120.00035 * 342.29492 * 21 19 18 23 23 Si 1.86800 * 120.00069 * 162.30304 * 21 19 18 24 24 H 1.48496 * 109.47266 * 179.97438 * 23 21 19 25 25 H 1.48501 * 109.46900 * 299.99576 * 23 21 19 26 26 H 1.48504 * 109.47251 * 59.99432 * 23 21 19 27 27 C 1.40719 * 119.51207 * 0.28087 * 18 17 16 28 28 C 1.37621 * 119.74279 * 359.40153 * 27 18 17 29 29 H 1.09000 * 109.47462 * 300.35655 * 1 2 3 30 30 H 1.09000 * 109.47331 * 60.35681 * 1 2 3 31 31 H 1.08994 * 109.47416 * 180.35420 * 1 2 3 32 32 H 1.08999 * 109.47434 * 300.14850 * 6 4 2 33 33 H 1.09001 * 109.47152 * 60.14860 * 6 4 2 34 34 H 0.96705 * 114.00226 * 179.97438 * 7 6 4 35 35 H 1.09001 * 111.00281 * 277.22952 * 8 4 2 36 36 H 1.08999 * 111.03934 * 153.39629 * 8 4 2 37 37 H 1.08998 * 110.36709 * 204.15355 * 9 8 4 38 38 H 1.09000 * 110.36612 * 81.82692 * 9 8 4 39 39 H 1.09000 * 109.47514 * 60.00208 * 14 11 10 40 40 H 1.08997 * 109.47573 * 299.99710 * 14 11 10 41 41 H 1.07997 * 119.87117 * 359.97438 * 16 15 14 42 42 H 1.08009 * 120.12478 * 180.02562 * 17 16 15 43 43 H 0.97004 * 120.00360 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.12475 * 179.72303 * 27 18 17 45 45 H 1.07995 * 119.87237 * 180.32011 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7477 -1.2427 5 1 1.3066 -1.4404 -1.6226 6 6 2.4816 0.2388 -2.3326 7 8 2.9612 -0.4835 -3.4685 8 6 3.2863 -1.5183 -0.6915 9 6 2.8099 -1.8825 0.7368 10 7 2.0300 -0.7141 1.1839 11 16 1.7564 -0.2816 2.7588 12 8 1.8555 -1.5022 3.4797 13 8 0.5370 0.4468 2.7155 14 6 3.1394 0.8164 3.1734 15 6 3.0006 1.2826 4.5998 16 6 3.5785 0.5472 5.6232 17 6 3.4586 0.9637 6.9293 18 6 2.7457 2.1405 7.2242 19 6 2.6164 2.5785 8.5624 20 1 2.6981 1.8695 9.3730 21 6 2.3825 3.9308 8.8366 22 7 2.6227 4.8347 7.9219 23 14 1.7275 4.4451 10.5086 24 1 1.5678 5.9210 10.5451 25 1 0.4118 3.7984 10.7451 26 1 2.6828 4.0248 11.5652 27 6 2.1579 2.8754 6.1780 28 6 2.2962 2.4436 4.8786 29 1 -0.3634 0.5193 0.8867 30 1 -0.3634 0.5083 -0.8932 31 1 -0.3634 -1.0276 0.0064 32 1 1.6261 0.8481 -2.6241 33 1 3.2736 0.8833 -1.9511 34 1 3.2477 0.0798 -4.2005 35 1 4.1669 -0.8768 -0.6580 36 1 3.4813 -2.4154 -1.2790 37 1 3.6655 -2.0412 1.3931 38 1 2.1800 -2.7718 0.7113 39 1 3.1309 1.6791 2.5073 40 1 4.0793 0.2769 3.0571 41 1 4.1248 -0.3559 5.3945 42 1 3.9099 0.3895 7.7250 43 1 2.4603 5.7720 8.1117 44 1 1.6048 3.7777 6.3935 45 1 1.8503 3.0088 4.0736 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413361506.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:31 Heat of formation + Delta-G solvation = -110.304173 kcal Electronic energy + Delta-G solvation = -27495.280367 eV Core-core repulsion = 23604.047554 eV Total energy + Delta-G solvation = -3891.232814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.39051 -37.78988 -36.74983 -36.65918 -35.44884 -34.17982 -31.75330 -31.51333 -31.35626 -29.44915 -27.87887 -27.15587 -24.23849 -24.08474 -22.07719 -21.17753 -20.61420 -20.29818 -18.57942 -17.64332 -17.45129 -17.29677 -16.52254 -15.84496 -15.48692 -15.22524 -14.88719 -14.51949 -14.06672 -13.94295 -13.86331 -13.73525 -13.61151 -13.25839 -12.79371 -12.66850 -12.29675 -12.17707 -12.08631 -11.81972 -11.76324 -11.59448 -11.58342 -11.50546 -11.34216 -11.16083 -11.08478 -10.92099 -10.83638 -10.78619 -10.65270 -10.27872 -10.24401 -9.84072 -9.53902 -9.27340 -8.96639 -7.62536 -7.45504 -6.93378 -4.50692 0.56158 2.63168 2.94814 2.97430 2.99602 3.01600 3.11490 3.74517 3.81631 4.21993 4.25897 4.39988 4.48533 4.55193 4.73650 5.00704 5.03009 5.11101 5.16587 5.21412 5.28288 5.29523 5.42529 5.49619 5.53571 5.63072 5.72866 5.78929 5.95372 6.02146 6.05536 6.19140 6.22239 6.24905 6.45092 6.47265 6.82347 6.90571 7.08942 7.17555 7.26278 7.44901 7.65688 7.88923 7.89631 8.11767 8.46684 8.71215 8.79214 9.99865 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.025881 B = 0.002526 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.612931 B =11083.254313 C =11319.658122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.158 3.842 3 H 0.073 0.927 4 C -0.095 4.095 5 H 0.091 0.909 6 C 0.085 3.915 7 O -0.572 6.572 8 C -0.120 4.120 9 C 0.120 3.880 10 N -1.016 6.016 11 S 2.589 3.411 12 O -0.959 6.959 13 O -0.955 6.955 14 C -0.520 4.520 15 C -0.237 4.237 16 C -0.068 4.068 17 C -0.225 4.225 18 C 0.118 3.882 19 C -0.448 4.448 20 H 0.083 0.917 21 C 0.074 3.926 22 N -0.782 5.782 23 Si 0.913 3.087 24 H -0.277 1.277 25 H -0.261 1.261 26 H -0.263 1.263 27 C -0.166 4.166 28 C -0.080 4.080 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.379 0.621 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.285 0.715 44 H 0.123 0.877 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.141 -5.244 -18.103 18.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.052 3.948 3 H 0.091 0.909 4 C -0.115 4.115 5 H 0.110 0.890 6 C 0.007 3.993 7 O -0.378 6.378 8 C -0.159 4.159 9 C -0.005 4.005 10 N -0.852 5.852 11 S 2.691 3.309 12 O -0.950 6.950 13 O -0.945 6.945 14 C -0.650 4.650 15 C -0.243 4.243 16 C -0.088 4.088 17 C -0.245 4.245 18 C 0.114 3.886 19 C -0.477 4.477 20 H 0.101 0.899 21 C -0.146 4.146 22 N -0.406 5.406 23 Si 0.737 3.263 24 H -0.202 1.202 25 H -0.185 1.185 26 H -0.188 1.188 27 C -0.186 4.186 28 C -0.100 4.100 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.226 0.774 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.096 0.904 44 H 0.141 0.859 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.220 -5.826 -17.236 18.196 hybrid contribution 0.542 1.187 0.101 1.309 sum 0.763 -4.639 -17.135 17.769 Atomic orbital electron populations 1.22554 0.94390 1.03067 1.04302 1.21111 0.94512 0.95217 0.83988 0.90909 1.22277 0.98506 0.97520 0.93220 0.89022 1.22151 0.97659 0.93281 0.86241 1.86463 1.85985 1.37930 1.27382 1.22791 0.97271 1.00891 0.94919 1.21943 0.94810 0.88382 0.95384 1.59126 1.66904 1.36955 1.22195 1.06430 0.77604 0.75755 0.71096 1.93522 1.87670 1.43557 1.70209 1.93476 1.41664 1.74758 1.84631 1.28969 1.17364 1.14131 1.04580 1.18114 1.14957 1.02004 0.89216 1.20472 0.97893 0.97211 0.93188 1.20986 1.07182 1.01671 0.94706 1.17735 0.87135 0.90207 0.93508 1.19719 1.41544 0.93268 0.93193 0.89894 1.26017 0.92633 0.96533 0.99407 1.69806 1.32919 1.02753 1.35101 0.86278 0.80613 0.77894 0.81526 1.20157 1.18538 1.18797 1.21326 1.03627 1.02394 0.91248 1.20598 0.97957 0.94634 0.96788 0.88604 0.91947 0.92340 0.93260 0.93202 0.77376 0.90642 0.89859 0.90677 0.91468 0.86236 0.86323 0.88702 0.88291 0.90401 0.85929 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 9.00 37.15 0.33 -1.84 16 2 C 0.16 1.75 3.26 -66.95 -0.22 1.53 16 3 H 0.07 0.72 7.82 -51.93 -0.41 0.31 16 4 C -0.10 -0.86 2.76 -88.78 -0.24 -1.11 16 5 H 0.09 0.85 7.85 -51.93 -0.41 0.45 16 6 C 0.08 0.62 6.34 37.16 0.24 0.86 16 7 O -0.57 -4.32 13.51 -35.23 -0.48 -4.79 16 8 C -0.12 -1.06 6.39 -24.59 -0.16 -1.22 16 9 C 0.12 1.32 6.89 -2.53 -0.02 1.30 16 10 N -1.02 -13.37 3.33 -104.42 -0.35 -13.72 16 11 S 2.59 44.98 5.62 -107.50 -0.60 44.37 16 12 O -0.96 -19.59 17.61 -57.54 -1.01 -20.60 16 13 O -0.95 -18.85 15.00 -57.54 -0.86 -19.71 16 14 C -0.52 -8.68 6.29 36.01 0.23 -8.46 16 15 C -0.24 -5.19 5.16 -104.33 -0.54 -5.73 16 16 C -0.07 -1.54 9.67 -39.66 -0.38 -1.92 16 17 C -0.23 -5.52 9.80 -38.88 -0.38 -5.90 16 18 C 0.12 3.10 5.57 -106.82 -0.60 2.50 16 19 C -0.45 -11.56 9.05 -37.74 -0.34 -11.90 16 20 H 0.08 2.03 7.91 -52.49 -0.41 1.62 16 21 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 22 N -0.78 -19.44 10.95 55.55 0.61 -18.84 16 23 Si 0.91 18.01 29.59 -169.99 -5.03 12.98 16 24 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 25 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 26 H -0.26 -5.12 7.11 56.52 0.40 -4.71 16 27 C -0.17 -4.29 8.70 -38.87 -0.34 -4.63 16 28 C -0.08 -1.88 9.67 -39.66 -0.38 -2.26 16 29 H 0.10 1.39 5.65 -51.93 -0.29 1.10 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.33 8.10 -51.93 -0.42 -0.09 16 34 H 0.38 1.20 9.12 45.56 0.42 1.61 16 35 H 0.07 0.62 8.02 -51.93 -0.42 0.21 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.12 1.71 8.08 -51.92 -0.42 1.29 16 40 H 0.12 1.69 8.08 -51.93 -0.42 1.27 16 41 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 42 H 0.10 2.24 8.06 -52.48 -0.42 1.82 16 43 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 44 H 0.12 3.21 6.16 -52.49 -0.32 2.89 16 45 H 0.09 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 378.73 15.07 5.71 5.71 Total: -1.00 -32.26 378.73 -10.96 -43.22 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -6.05 Total: 8.44 kcal Atomic # 6 Polarization: -34.17 SS G_CDS: -2.89 Total: -37.06 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.26 Total: -32.55 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -2.35 Total: -45.11 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Atomic # 16 Polarization: 44.98 SS G_CDS: -0.60 Total: 44.37 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.26 -10.96 -43.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413361506.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.084 kcal (2) G-P(sol) polarization free energy of solvation -32.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds