Wall clock time and date at job start Tue Mar 31 2020 23:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 110.00071 * 2 1 4 4 C 1.54330 * 109.99299 * 238.96553 * 2 1 3 5 5 H 1.09002 * 110.67043 * 337.04779 * 4 2 1 6 6 C 1.52997 * 110.85290 * 100.19641 * 4 2 1 7 7 O 1.42899 * 109.47465 * 180.14715 * 6 4 2 8 8 C 1.55154 * 103.02285 * 218.66596 * 4 2 1 9 9 C 1.54906 * 101.58221 * 35.30514 * 8 4 2 10 10 N 1.47022 * 109.88335 * 121.09677 * 2 1 3 11 11 S 1.65596 * 125.64867 * 298.39543 * 10 2 1 12 12 O 1.42106 * 104.27801 * 153.64516 * 11 10 2 13 13 O 1.42102 * 104.27789 * 25.78791 * 11 10 2 14 14 C 1.81393 * 104.45041 * 269.71345 * 11 10 2 15 15 C 1.50705 * 109.47363 * 179.97438 * 14 11 10 16 16 C 1.38638 * 119.74967 * 90.00141 * 15 14 11 17 17 C 1.37613 * 120.24807 * 179.97438 * 16 15 14 18 18 C 1.40709 * 119.74697 * 0.02562 * 17 16 15 19 19 C 1.41399 * 120.24578 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00010 * 335.72332 * 19 18 17 21 21 C 1.39946 * 119.99947 * 155.72470 * 19 18 17 22 22 N 1.30821 * 120.00035 * 342.29492 * 21 19 18 23 23 Si 1.86800 * 120.00069 * 162.30304 * 21 19 18 24 24 H 1.48496 * 109.47266 * 179.97438 * 23 21 19 25 25 H 1.48501 * 109.46900 * 299.99576 * 23 21 19 26 26 H 1.48504 * 109.47251 * 59.99432 * 23 21 19 27 27 C 1.40719 * 119.51207 * 0.28087 * 18 17 16 28 28 C 1.37621 * 119.74279 * 359.40153 * 27 18 17 29 29 H 1.09000 * 109.47462 * 300.35655 * 1 2 3 30 30 H 1.09000 * 109.47331 * 60.35681 * 1 2 3 31 31 H 1.08994 * 109.47416 * 180.35420 * 1 2 3 32 32 H 1.08999 * 109.47434 * 300.14850 * 6 4 2 33 33 H 1.09001 * 109.47152 * 60.14860 * 6 4 2 34 34 H 0.96705 * 114.00226 * 179.97438 * 7 6 4 35 35 H 1.09001 * 111.00281 * 277.22952 * 8 4 2 36 36 H 1.08999 * 111.03934 * 153.39629 * 8 4 2 37 37 H 1.08998 * 110.36709 * 204.15355 * 9 8 4 38 38 H 1.09000 * 110.36612 * 81.82692 * 9 8 4 39 39 H 1.09000 * 109.47514 * 60.00208 * 14 11 10 40 40 H 1.08997 * 109.47573 * 299.99710 * 14 11 10 41 41 H 1.07997 * 119.87117 * 359.97438 * 16 15 14 42 42 H 1.08009 * 120.12478 * 180.02562 * 17 16 15 43 43 H 0.97004 * 120.00360 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.12475 * 179.72303 * 27 18 17 45 45 H 1.07995 * 119.87237 * 180.32011 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7477 -1.2427 5 1 1.3066 -1.4404 -1.6226 6 6 2.4816 0.2388 -2.3326 7 8 2.9612 -0.4835 -3.4685 8 6 3.2863 -1.5183 -0.6915 9 6 2.8099 -1.8825 0.7368 10 7 2.0300 -0.7141 1.1839 11 16 1.7564 -0.2816 2.7588 12 8 1.8555 -1.5022 3.4797 13 8 0.5370 0.4468 2.7155 14 6 3.1394 0.8164 3.1734 15 6 3.0006 1.2826 4.5998 16 6 3.5785 0.5472 5.6232 17 6 3.4586 0.9637 6.9293 18 6 2.7457 2.1405 7.2242 19 6 2.6164 2.5785 8.5624 20 1 2.6981 1.8695 9.3730 21 6 2.3825 3.9308 8.8366 22 7 2.6227 4.8347 7.9219 23 14 1.7275 4.4451 10.5086 24 1 1.5678 5.9210 10.5451 25 1 0.4118 3.7984 10.7451 26 1 2.6828 4.0248 11.5652 27 6 2.1579 2.8754 6.1780 28 6 2.2962 2.4436 4.8786 29 1 -0.3634 0.5193 0.8867 30 1 -0.3634 0.5083 -0.8932 31 1 -0.3634 -1.0276 0.0064 32 1 1.6261 0.8481 -2.6241 33 1 3.2736 0.8833 -1.9511 34 1 3.2477 0.0798 -4.2005 35 1 4.1669 -0.8768 -0.6580 36 1 3.4813 -2.4154 -1.2790 37 1 3.6655 -2.0412 1.3931 38 1 2.1800 -2.7718 0.7113 39 1 3.1309 1.6791 2.5073 40 1 4.0793 0.2769 3.0571 41 1 4.1248 -0.3559 5.3945 42 1 3.9099 0.3895 7.7250 43 1 2.4603 5.7720 8.1117 44 1 1.6048 3.7777 6.3935 45 1 1.8503 3.0088 4.0736 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413361506.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:30 Heat of formation + Delta-G solvation = -133.053259 kcal Electronic energy + Delta-G solvation = -27496.266842 eV Core-core repulsion = 23604.047554 eV Total energy + Delta-G solvation = -3892.219288 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.19199 -39.60359 -38.15888 -37.31560 -36.93253 -35.96830 -33.23480 -32.59763 -32.19275 -31.30328 -29.56712 -27.96595 -25.98510 -24.82913 -23.06355 -22.99732 -22.05139 -21.35301 -19.80588 -19.31543 -18.57169 -18.13070 -17.66661 -17.21038 -17.07697 -16.38404 -16.11705 -15.71411 -15.61758 -15.54878 -14.87210 -14.72474 -14.49580 -14.38003 -14.09321 -13.93032 -13.70204 -13.67155 -13.49500 -13.25689 -13.12097 -13.10263 -12.84903 -12.79088 -12.68424 -12.59331 -12.35278 -12.32993 -11.89259 -11.78677 -11.63162 -11.58491 -11.52318 -11.36758 -11.04489 -10.76195 -10.03410 -9.49571 -9.28074 -8.73033 -6.42470 -0.81291 0.86349 1.04370 1.36952 1.47957 1.51963 1.76418 2.17024 2.61808 2.91657 3.01663 3.27785 3.56005 3.63487 3.72866 3.82428 3.99012 4.08802 4.21199 4.40231 4.41318 4.42319 4.47599 4.48479 4.56900 4.66268 4.67791 4.74988 4.80615 4.96580 5.00430 5.05864 5.06715 5.15256 5.22091 5.23077 5.32343 5.41559 5.47809 5.51879 5.58961 5.81223 6.00120 6.01947 6.25901 6.58301 6.82908 6.90682 6.97776 8.23310 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.025881 B = 0.002526 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.612931 B =11083.254313 C =11319.658122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.150 3.850 3 H 0.090 0.910 4 C -0.091 4.091 5 H 0.087 0.913 6 C 0.087 3.913 7 O -0.589 6.589 8 C -0.111 4.111 9 C 0.109 3.891 10 N -1.012 6.012 11 S 2.610 3.390 12 O -0.994 6.994 13 O -0.983 6.983 14 C -0.523 4.523 15 C -0.234 4.234 16 C -0.078 4.078 17 C -0.246 4.246 18 C 0.085 3.915 19 C -0.490 4.490 20 H 0.082 0.918 21 C 0.034 3.966 22 N -0.814 5.814 23 Si 0.986 3.014 24 H -0.264 1.264 25 H -0.262 1.262 26 H -0.257 1.257 27 C -0.194 4.194 28 C -0.090 4.090 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.398 0.602 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.124 0.876 42 H 0.106 0.894 43 H 0.293 0.707 44 H 0.108 0.892 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.983 -5.491 -20.508 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.044 3.956 3 H 0.108 0.892 4 C -0.111 4.111 5 H 0.106 0.894 6 C 0.009 3.991 7 O -0.398 6.398 8 C -0.150 4.150 9 C -0.016 4.016 10 N -0.850 5.850 11 S 2.712 3.288 12 O -0.984 6.984 13 O -0.974 6.974 14 C -0.654 4.654 15 C -0.238 4.238 16 C -0.097 4.097 17 C -0.266 4.266 18 C 0.082 3.918 19 C -0.518 4.518 20 H 0.100 0.900 21 C -0.182 4.182 22 N -0.439 5.439 23 Si 0.806 3.194 24 H -0.188 1.188 25 H -0.186 1.186 26 H -0.181 1.181 27 C -0.214 4.214 28 C -0.109 4.109 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.248 0.752 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.168 0.832 40 H 0.169 0.831 41 H 0.142 0.858 42 H 0.124 0.876 43 H 0.103 0.897 44 H 0.126 0.874 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.079 -6.055 -19.628 20.569 hybrid contribution 0.301 1.126 0.541 1.285 sum 1.380 -4.930 -19.087 19.762 Atomic orbital electron populations 1.22553 0.95234 1.02627 1.04130 1.21378 0.93992 0.96295 0.83912 0.89161 1.22220 0.98417 0.97666 0.92802 0.89426 1.22110 0.98526 0.92677 0.85826 1.86404 1.86131 1.39109 1.28123 1.22775 0.97450 1.01531 0.93201 1.22222 0.94870 0.87420 0.97078 1.58693 1.67265 1.37796 1.21230 1.05224 0.76967 0.74890 0.71756 1.93484 1.88023 1.44948 1.71956 1.93462 1.43137 1.75290 1.85497 1.29036 1.18914 1.15689 1.01716 1.18531 1.12635 1.00752 0.91879 1.20868 0.97928 0.98206 0.92686 1.21233 1.07552 1.01651 0.96124 1.18091 0.88158 0.91345 0.94212 1.19952 1.44229 0.94444 0.93222 0.90026 1.26855 0.92139 0.95915 1.03305 1.69847 1.33632 1.03297 1.37101 0.85197 0.79662 0.77927 0.76652 1.18846 1.18604 1.18058 1.21341 1.04848 1.02628 0.92540 1.20916 0.98042 0.95536 0.96436 0.91561 0.89341 0.92912 0.92184 0.92108 0.75199 0.89457 0.88842 0.89770 0.91737 0.83247 0.83079 0.85849 0.87610 0.89662 0.87435 0.86717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.09 9.00 71.98 0.65 -3.44 16 2 C 0.15 2.90 3.26 45.34 0.15 3.05 16 3 H 0.09 1.45 7.82 -2.39 -0.02 1.43 16 4 C -0.09 -1.35 2.76 -9.61 -0.03 -1.38 16 5 H 0.09 1.39 7.85 -2.39 -0.02 1.37 16 6 C 0.09 0.94 6.34 71.98 0.46 1.39 16 7 O -0.59 -6.80 13.51 -148.98 -2.01 -8.81 16 8 C -0.11 -1.57 6.39 31.98 0.20 -1.37 16 9 C 0.11 2.10 6.89 86.85 0.60 2.70 16 10 N -1.01 -24.20 3.33 -484.28 -1.61 -25.81 16 11 S 2.61 86.69 5.62 -56.49 -0.32 86.38 16 12 O -0.99 -39.68 17.61 -127.65 -2.25 -41.93 16 13 O -0.98 -38.34 15.00 -127.65 -1.92 -40.25 16 14 C -0.52 -15.98 6.29 71.24 0.45 -15.53 16 15 C -0.23 -9.97 5.16 -19.67 -0.10 -10.07 16 16 C -0.08 -3.48 9.67 22.22 0.21 -3.26 16 17 C -0.25 -12.36 9.80 22.73 0.22 -12.14 16 18 C 0.08 4.67 5.57 -21.29 -0.12 4.56 16 19 C -0.49 -26.45 9.05 23.46 0.21 -26.23 16 20 H 0.08 4.22 7.91 -2.91 -0.02 4.19 16 21 C 0.03 1.72 5.14 85.26 0.44 2.16 16 22 N -0.81 -41.90 10.95 21.83 0.24 -41.67 16 23 Si 0.99 37.66 29.59 68.60 2.03 39.69 16 24 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 25 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 26 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 27 C -0.19 -10.41 8.70 22.73 0.20 -10.21 16 28 C -0.09 -4.24 9.67 22.22 0.21 -4.02 16 29 H 0.07 1.88 5.65 -2.39 -0.01 1.87 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.54 8.10 -2.39 -0.02 0.52 16 34 H 0.40 1.16 9.12 -74.05 -0.68 0.48 16 35 H 0.09 1.06 8.02 -2.39 -0.02 1.05 16 36 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.15 3.71 8.08 -2.39 -0.02 3.69 16 40 H 0.15 3.67 8.08 -2.39 -0.02 3.65 16 41 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 42 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 43 H 0.29 13.50 8.30 -92.71 -0.77 12.73 16 44 H 0.11 5.96 6.16 -2.91 -0.02 5.94 16 45 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -72.85 378.73 -1.76 -74.61 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: 0.32 Total: 31.59 kcal Atomic # 6 Polarization: -77.55 SS G_CDS: 3.76 Total: -73.79 kcal Atomic # 7 Polarization: -66.10 SS G_CDS: -1.37 Total: -67.47 kcal Atomic # 8 Polarization: -84.82 SS G_CDS: -6.17 Total: -91.00 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Atomic # 16 Polarization: 86.69 SS G_CDS: -0.32 Total: 86.38 kcal Total: -72.85 -1.76 -74.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413361506.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.447 kcal (2) G-P(sol) polarization free energy of solvation -72.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds