Wall clock time and date at job start Tue Mar 31 2020 23:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.99959 * 2 1 4 4 C 1.54322 * 109.88203 * 121.09765 * 2 1 3 5 5 H 1.09008 * 110.72249 * 215.58911 * 4 2 1 6 6 C 1.53001 * 110.72055 * 338.86055 * 4 2 1 7 7 O 1.42906 * 109.47089 * 179.97438 * 6 4 2 8 8 C 1.55156 * 102.94535 * 97.22644 * 4 2 1 9 9 C 1.54904 * 101.58219 * 35.49926 * 8 4 2 10 10 N 1.47290 * 109.85691 * 238.93087 * 2 1 3 11 11 S 1.65601 * 125.79194 * 59.50466 * 10 2 1 12 12 O 1.42095 * 104.27628 * 26.09284 * 11 10 2 13 13 O 1.42099 * 104.27806 * 153.95211 * 11 10 2 14 14 C 1.81408 * 104.44710 * 270.02218 * 11 10 2 15 15 C 1.50696 * 109.46888 * 179.97438 * 14 11 10 16 16 C 1.38640 * 119.74882 * 269.72841 * 15 14 11 17 17 C 1.37620 * 120.24589 * 179.72169 * 16 15 14 18 18 C 1.40715 * 119.74629 * 0.57435 * 17 16 15 19 19 C 1.41391 * 120.24645 * 179.67800 * 18 17 16 20 20 H 1.08009 * 119.99927 * 24.41159 * 19 18 17 21 21 C 1.39942 * 120.00276 * 204.40518 * 19 18 17 22 22 N 1.30823 * 119.99674 * 17.85981 * 21 19 18 23 23 Si 1.86795 * 120.00165 * 197.85807 * 21 19 18 24 24 H 1.48495 * 109.47337 * 59.99987 * 23 21 19 25 25 H 1.48505 * 109.47225 * 180.02562 * 23 21 19 26 26 H 1.48510 * 109.47247 * 300.00287 * 23 21 19 27 27 C 1.40722 * 119.51001 * 359.69673 * 18 17 16 28 28 C 1.37616 * 119.74393 * 0.02562 * 27 18 17 29 29 H 1.08998 * 109.46983 * 298.89987 * 1 2 3 30 30 H 1.08994 * 109.47372 * 58.90227 * 1 2 3 31 31 H 1.08998 * 109.46872 * 178.90568 * 1 2 3 32 32 H 1.08998 * 109.47072 * 299.97499 * 6 4 2 33 33 H 1.08994 * 109.47016 * 59.97959 * 6 4 2 34 34 H 0.96699 * 114.00093 * 179.97438 * 7 6 4 35 35 H 1.09002 * 111.00221 * 277.42905 * 8 4 2 36 36 H 1.08998 * 111.00785 * 153.57898 * 8 4 2 37 37 H 1.08995 * 110.36532 * 81.82836 * 9 8 4 38 38 H 1.08999 * 110.37183 * 204.04772 * 9 8 4 39 39 H 1.08994 * 109.46848 * 300.00046 * 14 11 10 40 40 H 1.08998 * 109.46884 * 59.99724 * 14 11 10 41 41 H 1.07995 * 119.87574 * 359.97438 * 16 15 14 42 42 H 1.07999 * 120.12418 * 180.27141 * 17 16 15 43 43 H 0.97007 * 119.99724 * 179.97438 * 22 21 19 44 44 H 1.08000 * 120.12634 * 179.97438 * 27 18 17 45 45 H 1.08002 * 119.87499 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 1.2427 5 1 2.9657 -0.2832 1.6183 6 6 0.9838 -0.8050 2.3338 7 8 1.4968 -1.5040 3.4698 8 6 2.3519 -2.1695 0.6924 9 6 2.8568 -1.8498 -0.7368 10 7 2.0303 -0.7149 -1.1866 11 16 1.7182 -0.3131 -2.7625 12 8 1.4570 1.0831 -2.7230 13 8 2.8284 -0.8307 -3.4827 14 6 0.2088 -1.2317 -3.1733 15 6 -0.1815 -0.9442 -4.6002 16 6 -1.0314 0.1145 -4.8809 17 6 -1.3899 0.3898 -6.1808 18 6 -0.9000 -0.4155 -7.2256 19 6 -1.2670 -0.1463 -8.5643 20 1 -1.5736 0.8490 -8.8505 21 6 -1.2328 -1.1695 -9.5184 22 7 -1.2083 -2.4202 -9.1357 23 14 -1.2223 -0.7493 -11.3385 24 1 -0.0249 0.0718 -11.6501 25 1 -1.1852 -2.0018 -12.1355 26 1 -2.4491 0.0161 -11.6770 27 6 -0.0425 -1.4909 -6.9283 28 6 0.3073 -1.7441 -5.6216 29 1 -0.3633 0.4966 0.8997 30 1 -0.3634 0.5307 -0.8799 31 1 -0.3633 -1.0275 -0.0196 32 1 0.7087 0.2088 2.6248 33 1 0.1046 -1.3252 1.9538 34 1 0.8701 -1.5772 4.2026 35 1 1.4452 -2.7737 0.6603 36 1 3.1270 -2.6619 1.2796 37 1 3.9091 -1.5667 -0.7128 38 1 2.7106 -2.7087 -1.3918 39 1 0.3897 -2.2999 -3.0539 40 1 -0.5970 -0.9230 -2.5073 41 1 -1.4103 0.7280 -4.0770 42 1 -2.0487 1.2177 -6.3977 43 1 -1.1850 -3.1295 -9.7971 44 1 0.3390 -2.1156 -7.7224 45 1 0.9649 -2.5691 -5.3909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413361513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:35 Heat of formation + Delta-G solvation = -108.136782 kcal Electronic energy + Delta-G solvation = -27624.656014 eV Core-core repulsion = 23733.517185 eV Total energy + Delta-G solvation = -3891.138828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.56845 -37.79074 -36.70044 -36.65726 -35.44511 -34.18401 -32.06970 -31.55451 -31.20841 -29.44849 -27.86152 -26.72153 -24.92177 -24.21025 -22.28406 -21.16839 -20.33977 -19.79754 -18.58957 -17.93306 -17.45469 -17.39432 -16.32908 -15.93702 -15.51108 -15.33053 -14.88545 -14.56137 -14.21452 -14.03378 -13.85875 -13.79124 -13.58310 -12.94071 -12.83569 -12.68569 -12.57200 -12.23248 -12.08749 -11.91367 -11.75710 -11.62079 -11.58392 -11.54843 -11.24317 -11.17763 -11.15289 -10.95285 -10.83396 -10.81239 -10.76590 -10.28086 -10.20526 -9.84029 -9.53852 -9.26820 -8.98076 -7.62425 -7.45601 -6.93331 -4.50530 0.56390 2.63286 2.94938 2.96971 2.99774 3.01707 3.11698 3.74469 3.81731 4.21787 4.24522 4.36707 4.48068 4.55167 4.70726 4.92563 5.02585 5.04268 5.13609 5.17608 5.25171 5.25691 5.38636 5.43295 5.52810 5.53824 5.65737 5.76889 5.82116 5.96031 6.05408 6.10296 6.15539 6.19865 6.24776 6.45255 6.82462 6.90607 7.09089 7.17697 7.26928 7.44965 7.65712 7.89099 7.89742 8.11797 8.46801 8.71256 8.79336 9.99894 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.030290 B = 0.002507 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.183601 B =11163.988637 C =11338.057635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.157 3.843 3 H 0.083 0.917 4 C -0.094 4.094 5 H 0.090 0.910 6 C 0.083 3.917 7 O -0.574 6.574 8 C -0.118 4.118 9 C 0.119 3.881 10 N -1.016 6.016 11 S 2.588 3.412 12 O -0.959 6.959 13 O -0.958 6.958 14 C -0.520 4.520 15 C -0.238 4.238 16 C -0.067 4.067 17 C -0.226 4.226 18 C 0.118 3.882 19 C -0.448 4.448 20 H 0.083 0.917 21 C 0.074 3.926 22 N -0.781 5.781 23 Si 0.913 3.087 24 H -0.261 1.261 25 H -0.277 1.277 26 H -0.264 1.264 27 C -0.166 4.166 28 C -0.081 4.081 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.379 0.621 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.285 0.715 44 H 0.123 0.877 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.332 -1.106 19.217 19.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.051 3.949 3 H 0.101 0.899 4 C -0.114 4.114 5 H 0.109 0.891 6 C 0.005 3.995 7 O -0.380 6.380 8 C -0.157 4.157 9 C -0.006 4.006 10 N -0.852 5.852 11 S 2.691 3.309 12 O -0.949 6.949 13 O -0.949 6.949 14 C -0.651 4.651 15 C -0.243 4.243 16 C -0.087 4.087 17 C -0.246 4.246 18 C 0.114 3.886 19 C -0.477 4.477 20 H 0.101 0.899 21 C -0.146 4.146 22 N -0.405 5.405 23 Si 0.737 3.263 24 H -0.185 1.185 25 H -0.202 1.202 26 H -0.188 1.188 27 C -0.186 4.186 28 C -0.100 4.100 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.226 0.774 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.096 0.904 44 H 0.141 0.859 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.449 -0.776 18.213 18.553 hybrid contribution -1.112 -0.341 -0.270 1.194 sum 2.337 -1.117 17.943 18.129 Atomic orbital electron populations 1.22558 0.95516 1.02905 1.03662 1.21150 0.93672 0.96047 0.84049 0.89942 1.22195 0.99041 0.97034 0.93159 0.89135 1.22319 0.95615 0.95514 0.86016 1.86461 1.44970 1.79138 1.27392 1.22781 1.02083 0.96012 0.94849 1.21953 0.94958 0.88338 0.95396 1.59233 1.63336 1.40547 1.22096 1.06443 0.77659 0.75712 0.71128 1.93510 1.86761 1.29756 1.84904 1.93526 1.49738 1.81482 1.70152 1.29045 1.18562 1.12939 1.04550 1.18116 1.12276 1.04524 0.89384 1.20458 0.96371 0.95569 0.96286 1.20979 1.06823 1.04628 0.92127 1.17734 0.87920 0.90234 0.92691 1.19716 1.38269 0.96886 0.92846 0.89891 1.26018 0.92036 0.94361 1.02192 1.69810 1.33119 1.00322 1.37277 0.86278 0.80227 0.78998 0.80799 1.18538 1.20155 1.18802 1.21329 1.00950 1.01542 0.94786 1.20610 0.98590 0.97401 0.93432 0.90606 0.91425 0.91378 0.93252 0.92697 0.77414 0.90631 0.89834 0.91383 0.90668 0.86209 0.86202 0.88732 0.88299 0.90392 0.85912 0.88726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.79 7.48 37.16 0.28 -1.51 16 2 C 0.16 1.72 3.33 -66.81 -0.22 1.49 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.09 -0.83 3.16 -88.79 -0.28 -1.12 16 5 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 6 C 0.08 0.58 5.17 37.16 0.19 0.78 16 7 O -0.57 -4.23 13.51 -35.23 -0.48 -4.71 16 8 C -0.12 -1.04 6.39 -24.59 -0.16 -1.20 16 9 C 0.12 1.32 6.88 -2.53 -0.02 1.30 16 10 N -1.02 -13.53 3.35 -104.24 -0.35 -13.87 16 11 S 2.59 46.04 5.17 -107.50 -0.56 45.49 16 12 O -0.96 -19.51 17.31 -57.54 -1.00 -20.50 16 13 O -0.96 -20.13 17.60 -57.54 -1.01 -21.14 16 14 C -0.52 -8.76 6.30 36.00 0.23 -8.53 16 15 C -0.24 -5.21 5.16 -104.33 -0.54 -5.74 16 16 C -0.07 -1.52 9.67 -39.66 -0.38 -1.90 16 17 C -0.23 -5.51 9.80 -38.87 -0.38 -5.89 16 18 C 0.12 3.10 5.58 -106.82 -0.60 2.51 16 19 C -0.45 -11.57 9.05 -37.75 -0.34 -11.91 16 20 H 0.08 2.03 7.91 -52.48 -0.41 1.62 16 21 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 22 N -0.78 -19.49 10.95 55.55 0.61 -18.88 16 23 Si 0.91 18.05 29.59 -169.99 -5.03 13.02 16 24 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 25 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 26 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 27 C -0.17 -4.32 8.70 -38.87 -0.34 -4.65 16 28 C -0.08 -1.91 9.67 -39.66 -0.38 -2.29 16 29 H 0.08 0.53 6.65 -51.93 -0.35 0.19 16 30 H 0.07 0.75 7.03 -51.93 -0.37 0.39 16 31 H 0.07 0.57 7.57 -51.93 -0.39 0.18 16 32 H 0.05 0.29 7.59 -51.93 -0.39 -0.10 16 33 H 0.05 0.35 6.62 -51.93 -0.34 0.00 16 34 H 0.38 1.14 9.12 45.56 0.42 1.56 16 35 H 0.08 0.62 8.02 -51.93 -0.42 0.21 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.12 1.74 8.08 -51.93 -0.42 1.32 16 40 H 0.12 1.70 6.90 -51.93 -0.36 1.34 16 41 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 43 H 0.29 6.43 8.30 -40.82 -0.34 6.09 16 44 H 0.12 3.24 6.16 -52.49 -0.32 2.91 16 45 H 0.09 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 375.10 15.07 5.65 5.65 Total: -1.00 -32.82 375.10 -11.07 -43.88 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -5.87 Total: 8.02 kcal Atomic # 6 Polarization: -33.93 SS G_CDS: -3.03 Total: -36.96 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 0.26 Total: -32.75 kcal Atomic # 8 Polarization: -43.86 SS G_CDS: -2.48 Total: -46.35 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Atomic # 16 Polarization: 46.04 SS G_CDS: -0.56 Total: 45.49 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.82 -11.07 -43.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413361513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.253 kcal (2) G-P(sol) polarization free energy of solvation -32.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds