Wall clock time and date at job start Tue Mar 31 2020 23:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.99959 * 2 1 4 4 C 1.54322 * 109.88203 * 121.09765 * 2 1 3 5 5 H 1.09008 * 110.72249 * 215.58911 * 4 2 1 6 6 C 1.53001 * 110.72055 * 338.86055 * 4 2 1 7 7 O 1.42906 * 109.47089 * 179.97438 * 6 4 2 8 8 C 1.55156 * 102.94535 * 97.22644 * 4 2 1 9 9 C 1.54904 * 101.58219 * 35.49926 * 8 4 2 10 10 N 1.47290 * 109.85691 * 238.93087 * 2 1 3 11 11 S 1.65601 * 125.79194 * 59.50466 * 10 2 1 12 12 O 1.42095 * 104.27628 * 26.09284 * 11 10 2 13 13 O 1.42099 * 104.27806 * 153.95211 * 11 10 2 14 14 C 1.81408 * 104.44710 * 270.02218 * 11 10 2 15 15 C 1.50696 * 109.46888 * 179.97438 * 14 11 10 16 16 C 1.38640 * 119.74882 * 269.72841 * 15 14 11 17 17 C 1.37620 * 120.24589 * 179.72169 * 16 15 14 18 18 C 1.40715 * 119.74629 * 0.57435 * 17 16 15 19 19 C 1.41391 * 120.24645 * 179.67800 * 18 17 16 20 20 H 1.08009 * 119.99927 * 24.41159 * 19 18 17 21 21 C 1.39942 * 120.00276 * 204.40518 * 19 18 17 22 22 N 1.30823 * 119.99674 * 17.85981 * 21 19 18 23 23 Si 1.86795 * 120.00165 * 197.85807 * 21 19 18 24 24 H 1.48495 * 109.47337 * 59.99987 * 23 21 19 25 25 H 1.48505 * 109.47225 * 180.02562 * 23 21 19 26 26 H 1.48510 * 109.47247 * 300.00287 * 23 21 19 27 27 C 1.40722 * 119.51001 * 359.69673 * 18 17 16 28 28 C 1.37616 * 119.74393 * 0.02562 * 27 18 17 29 29 H 1.08998 * 109.46983 * 298.89987 * 1 2 3 30 30 H 1.08994 * 109.47372 * 58.90227 * 1 2 3 31 31 H 1.08998 * 109.46872 * 178.90568 * 1 2 3 32 32 H 1.08998 * 109.47072 * 299.97499 * 6 4 2 33 33 H 1.08994 * 109.47016 * 59.97959 * 6 4 2 34 34 H 0.96699 * 114.00093 * 179.97438 * 7 6 4 35 35 H 1.09002 * 111.00221 * 277.42905 * 8 4 2 36 36 H 1.08998 * 111.00785 * 153.57898 * 8 4 2 37 37 H 1.08995 * 110.36532 * 81.82836 * 9 8 4 38 38 H 1.08999 * 110.37183 * 204.04772 * 9 8 4 39 39 H 1.08994 * 109.46848 * 300.00046 * 14 11 10 40 40 H 1.08998 * 109.46884 * 59.99724 * 14 11 10 41 41 H 1.07995 * 119.87574 * 359.97438 * 16 15 14 42 42 H 1.07999 * 120.12418 * 180.27141 * 17 16 15 43 43 H 0.97007 * 119.99724 * 179.97438 * 22 21 19 44 44 H 1.08000 * 120.12634 * 179.97438 * 27 18 17 45 45 H 1.08002 * 119.87499 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 1.2427 5 1 2.9657 -0.2832 1.6183 6 6 0.9838 -0.8050 2.3338 7 8 1.4968 -1.5040 3.4698 8 6 2.3519 -2.1695 0.6924 9 6 2.8568 -1.8498 -0.7368 10 7 2.0303 -0.7149 -1.1866 11 16 1.7182 -0.3131 -2.7625 12 8 1.4570 1.0831 -2.7230 13 8 2.8284 -0.8307 -3.4827 14 6 0.2088 -1.2317 -3.1733 15 6 -0.1815 -0.9442 -4.6002 16 6 -1.0314 0.1145 -4.8809 17 6 -1.3899 0.3898 -6.1808 18 6 -0.9000 -0.4155 -7.2256 19 6 -1.2670 -0.1463 -8.5643 20 1 -1.5736 0.8490 -8.8505 21 6 -1.2328 -1.1695 -9.5184 22 7 -1.2083 -2.4202 -9.1357 23 14 -1.2223 -0.7493 -11.3385 24 1 -0.0249 0.0718 -11.6501 25 1 -1.1852 -2.0018 -12.1355 26 1 -2.4491 0.0161 -11.6770 27 6 -0.0425 -1.4909 -6.9283 28 6 0.3073 -1.7441 -5.6216 29 1 -0.3633 0.4966 0.8997 30 1 -0.3634 0.5307 -0.8799 31 1 -0.3633 -1.0275 -0.0196 32 1 0.7087 0.2088 2.6248 33 1 0.1046 -1.3252 1.9538 34 1 0.8701 -1.5772 4.2026 35 1 1.4452 -2.7737 0.6603 36 1 3.1270 -2.6619 1.2796 37 1 3.9091 -1.5667 -0.7128 38 1 2.7106 -2.7087 -1.3918 39 1 0.3897 -2.2999 -3.0539 40 1 -0.5970 -0.9230 -2.5073 41 1 -1.4103 0.7280 -4.0770 42 1 -2.0487 1.2177 -6.3977 43 1 -1.1850 -3.1295 -9.7971 44 1 0.3390 -2.1156 -7.7224 45 1 0.9649 -2.5691 -5.3909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413361513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:34 Heat of formation + Delta-G solvation = -131.789515 kcal Electronic energy + Delta-G solvation = -27625.681673 eV Core-core repulsion = 23733.517185 eV Total energy + Delta-G solvation = -3892.164488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.34628 -39.61368 -38.19110 -37.26528 -36.97690 -35.97882 -33.26931 -32.86644 -32.04542 -31.30856 -29.57362 -27.44780 -26.10583 -25.47701 -23.24781 -23.00973 -22.04520 -20.67574 -19.75890 -19.31941 -18.76135 -18.32481 -17.60105 -17.28001 -16.99950 -16.51224 -16.15115 -15.72485 -15.62073 -15.52876 -15.14179 -14.77185 -14.38282 -14.35339 -13.94329 -13.78175 -13.71738 -13.60890 -13.52404 -13.28750 -13.26191 -13.16899 -13.07904 -12.81119 -12.75638 -12.59359 -12.37145 -12.25400 -11.89052 -11.84009 -11.71461 -11.60664 -11.44399 -11.37368 -11.04744 -10.69793 -10.05374 -9.50203 -9.29185 -8.73514 -6.42778 -0.84069 0.85684 1.04068 1.36789 1.47861 1.51847 1.73569 2.16724 2.61171 2.88471 2.98770 3.29064 3.54609 3.62745 3.72403 3.78882 3.96719 4.04413 4.21939 4.37321 4.39464 4.40337 4.46798 4.47007 4.55829 4.64208 4.67317 4.71802 4.81606 4.94282 4.96157 5.04781 5.06192 5.12356 5.22307 5.25668 5.26143 5.31761 5.39830 5.51129 5.58429 5.80578 5.99623 6.01497 6.25236 6.57810 6.82390 6.90242 7.00305 8.22797 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.030290 B = 0.002507 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.183601 B =11163.988637 C =11338.057635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.149 3.851 3 H 0.071 0.929 4 C -0.091 4.091 5 H 0.086 0.914 6 C 0.085 3.915 7 O -0.592 6.592 8 C -0.109 4.109 9 C 0.107 3.893 10 N -1.013 6.013 11 S 2.608 3.392 12 O -0.989 6.989 13 O -0.997 6.997 14 C -0.520 4.520 15 C -0.235 4.235 16 C -0.075 4.075 17 C -0.245 4.245 18 C 0.085 3.915 19 C -0.489 4.489 20 H 0.083 0.917 21 C 0.034 3.966 22 N -0.814 5.814 23 Si 0.986 3.014 24 H -0.262 1.262 25 H -0.265 1.265 26 H -0.256 1.256 27 C -0.195 4.195 28 C -0.092 4.092 29 H 0.102 0.898 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.398 0.602 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.148 0.852 40 H 0.154 0.846 41 H 0.125 0.875 42 H 0.107 0.893 43 H 0.293 0.707 44 H 0.107 0.893 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.845 -1.643 21.710 21.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.043 3.957 3 H 0.090 0.910 4 C -0.111 4.111 5 H 0.104 0.896 6 C 0.008 3.992 7 O -0.401 6.401 8 C -0.148 4.148 9 C -0.018 4.018 10 N -0.851 5.851 11 S 2.710 3.290 12 O -0.980 6.980 13 O -0.987 6.987 14 C -0.651 4.651 15 C -0.239 4.239 16 C -0.094 4.094 17 C -0.265 4.265 18 C 0.082 3.918 19 C -0.518 4.518 20 H 0.101 0.899 21 C -0.183 4.183 22 N -0.438 5.438 23 Si 0.806 3.194 24 H -0.186 1.186 25 H -0.189 1.189 26 H -0.180 1.180 27 C -0.214 4.214 28 C -0.111 4.111 29 H 0.121 0.879 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.248 0.752 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.167 0.833 40 H 0.171 0.829 41 H 0.143 0.857 42 H 0.125 0.875 43 H 0.103 0.897 44 H 0.125 0.875 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.936 -1.309 20.700 20.948 hybrid contribution -0.876 -0.192 -0.721 1.151 sum 2.060 -1.501 19.979 20.141 Atomic orbital electron populations 1.22638 0.94122 1.04078 1.04249 1.21385 0.94927 0.95581 0.83802 0.91045 1.22160 0.99588 0.96512 0.92828 0.89561 1.22288 0.94938 0.96496 0.85512 1.86404 1.46304 1.79184 1.28167 1.22763 1.02833 0.96193 0.92985 1.22233 0.94677 0.87695 0.97170 1.58788 1.63566 1.41589 1.21144 1.05260 0.77119 0.74820 0.71833 1.93473 1.87072 1.31602 1.85815 1.93484 1.51309 1.81893 1.72038 1.29096 1.19268 1.14936 1.01844 1.18522 1.10583 1.03130 0.91644 1.20857 0.96177 0.95991 0.96380 1.21234 1.07389 1.04986 0.92859 1.18092 0.88772 0.91145 0.93767 1.19956 1.40564 0.97529 0.93711 0.89934 1.26864 0.91013 0.93881 1.06497 1.69853 1.33776 1.01242 1.38977 0.85193 0.80208 0.79053 0.74966 1.18620 1.18887 1.17983 1.21339 1.02234 1.02227 0.95627 1.20921 0.98767 0.98292 0.93159 0.87910 0.93185 0.89766 0.92042 0.91431 0.75225 0.89405 0.88833 0.91653 0.90027 0.83347 0.82858 0.85681 0.87481 0.89663 0.87462 0.86958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.00 7.48 71.98 0.54 -2.46 16 2 C 0.15 2.88 3.33 45.29 0.15 3.03 16 3 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 4 C -0.09 -1.33 3.16 -9.61 -0.03 -1.36 16 5 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 6 C 0.09 0.86 5.17 71.98 0.37 1.24 16 7 O -0.59 -6.61 13.51 -148.98 -2.01 -8.63 16 8 C -0.11 -1.56 6.39 31.98 0.20 -1.36 16 9 C 0.11 2.14 6.88 86.85 0.60 2.74 16 10 N -1.01 -24.89 3.35 -483.69 -1.62 -26.51 16 11 S 2.61 89.49 5.17 -56.49 -0.29 89.20 16 12 O -0.99 -39.56 17.31 -127.65 -2.21 -41.77 16 13 O -1.00 -41.56 17.60 -127.65 -2.25 -43.80 16 14 C -0.52 -16.18 6.30 71.23 0.45 -15.73 16 15 C -0.23 -10.06 5.16 -19.67 -0.10 -10.16 16 16 C -0.07 -3.33 9.67 22.22 0.21 -3.12 16 17 C -0.24 -12.25 9.80 22.73 0.22 -12.03 16 18 C 0.09 4.69 5.58 -21.29 -0.12 4.58 16 19 C -0.49 -26.37 9.05 23.46 0.21 -26.16 16 20 H 0.08 4.25 7.91 -2.91 -0.02 4.22 16 21 C 0.03 1.70 5.14 85.26 0.44 2.14 16 22 N -0.81 -42.02 10.95 21.83 0.24 -41.78 16 23 Si 0.99 37.70 29.59 68.60 2.03 39.73 16 24 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 25 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 26 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 27 C -0.19 -10.52 8.70 22.73 0.20 -10.32 16 28 C -0.09 -4.39 9.67 22.22 0.21 -4.18 16 29 H 0.10 1.03 6.65 -2.39 -0.02 1.02 16 30 H 0.05 0.97 7.03 -2.39 -0.02 0.95 16 31 H 0.08 1.04 7.57 -2.39 -0.02 1.02 16 32 H 0.06 0.48 7.59 -2.39 -0.02 0.46 16 33 H 0.07 0.53 6.62 -2.39 -0.02 0.51 16 34 H 0.40 0.99 9.12 -74.06 -0.68 0.31 16 35 H 0.09 1.08 8.02 -2.39 -0.02 1.06 16 36 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.15 3.81 8.08 -2.39 -0.02 3.79 16 40 H 0.15 3.76 6.90 -2.39 -0.02 3.75 16 41 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 42 H 0.11 4.98 8.06 -2.91 -0.02 4.95 16 43 H 0.29 13.56 8.30 -92.70 -0.77 12.79 16 44 H 0.11 5.99 6.16 -2.91 -0.02 5.97 16 45 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -74.09 375.10 -2.22 -76.31 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 0.33 Total: 30.41 kcal Atomic # 6 Polarization: -76.71 SS G_CDS: 3.56 Total: -73.15 kcal Atomic # 7 Polarization: -66.91 SS G_CDS: -1.38 Total: -68.29 kcal Atomic # 8 Polarization: -87.74 SS G_CDS: -6.47 Total: -94.20 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Atomic # 16 Polarization: 89.49 SS G_CDS: -0.29 Total: 89.20 kcal Total: -74.09 -2.22 -76.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413361513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.482 kcal (2) G-P(sol) polarization free energy of solvation -74.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds